Wall clock time and date at job start Tue Mar 31 2020 18:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47266 * 2 1 4 4 H 1.09004 * 109.51583 * 305.07859 * 3 2 1 5 5 C 1.53188 * 109.50022 * 65.15805 * 3 2 1 6 6 N 1.46924 * 108.77780 * 174.58802 * 5 3 2 7 7 C 1.34771 * 120.62958 * 126.41070 * 6 5 3 8 8 O 1.21280 * 120.00414 * 0.02562 * 7 6 5 9 9 C 1.50711 * 119.99990 * 180.02562 * 7 6 5 10 10 C 1.50695 * 109.47081 * 180.02562 * 9 7 6 11 11 C 1.35351 * 126.75041 * 124.71299 * 10 9 7 12 12 N 1.35315 * 106.17848 * 179.85279 * 11 10 9 13 13 C 1.46495 * 125.87040 * 180.12073 * 12 11 10 14 14 C 1.52997 * 109.47339 * 125.32306 * 13 12 11 15 15 N 1.28714 * 108.25728 * 0.41518 * 12 11 10 16 16 N 1.28630 * 110.18639 * 359.74004 * 15 12 11 17 17 C 1.46931 * 118.73773 * 306.39768 * 6 5 3 18 18 C 1.53185 * 108.77641 * 53.60349 * 17 6 5 19 19 C 1.53035 * 109.49709 * 185.00288 * 3 2 1 20 20 H 1.08998 * 109.46520 * 58.67400 * 19 3 2 21 21 N 1.46500 * 109.45711 * 298.69630 * 19 3 2 22 22 C 1.36943 * 119.99878 * 155.00084 * 21 19 3 23 23 H 1.07996 * 119.99698 * 0.02562 * 22 21 19 24 24 C 1.38809 * 119.99902 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00319 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00011 * 180.02562 * 24 22 21 27 27 H 1.48506 * 109.47297 * 59.99967 * 26 24 22 28 28 H 1.48503 * 109.47261 * 300.00148 * 26 24 22 29 29 H 1.48500 * 109.47454 * 180.02562 * 26 24 22 30 30 H 1.08998 * 109.46967 * 300.00157 * 1 2 3 31 31 H 1.08998 * 109.47047 * 60.00046 * 1 2 3 32 32 H 1.09003 * 109.47236 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47345 * 239.99459 * 2 1 3 34 34 H 1.09002 * 109.46848 * 119.99488 * 2 1 3 35 35 H 1.09006 * 109.58625 * 294.37701 * 5 3 2 36 36 H 1.09005 * 109.58706 * 54.65764 * 5 3 2 37 37 H 1.08992 * 109.47258 * 300.00607 * 9 7 6 38 38 H 1.08998 * 109.46461 * 60.00436 * 9 7 6 39 39 H 1.08003 * 126.90793 * 0.02562 * 11 10 9 40 40 H 1.08994 * 109.47169 * 245.32785 * 13 12 11 41 41 H 1.09005 * 109.46995 * 5.32398 * 13 12 11 42 42 H 1.09005 * 109.47002 * 60.00096 * 14 13 12 43 43 H 1.08998 * 109.47437 * 179.97438 * 14 13 12 44 44 H 1.08994 * 109.47382 * 300.00349 * 14 13 12 45 45 H 1.08997 * 109.58256 * 173.39535 * 17 6 5 46 46 H 1.09001 * 109.58249 * 293.67215 * 17 6 5 47 47 H 1.09003 * 109.49822 * 185.41272 * 18 17 6 48 48 H 1.08999 * 109.49921 * 65.32134 * 18 17 6 49 49 H 0.97000 * 120.00415 * 335.00032 * 21 19 3 50 50 H 0.97001 * 119.99542 * 359.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6048 1.9826 -0.8408 5 6 1.6386 2.1268 1.3104 6 7 2.2451 3.4644 1.3506 7 6 1.4858 4.5564 1.5679 8 8 0.2899 4.4405 1.7330 9 6 2.1228 5.9218 1.6057 10 6 1.0641 6.9630 1.8629 11 6 1.0553 7.8803 2.8581 12 7 -0.0786 8.6009 2.6966 13 6 -0.5162 9.7139 3.5427 14 6 -0.7724 10.9460 2.6725 15 7 -0.7096 8.1363 1.6755 16 7 -0.0546 7.1588 1.1559 17 6 3.6953 3.5888 1.1496 18 6 4.0737 2.8881 -0.1589 19 6 3.5652 1.4450 -0.1258 20 1 3.8546 0.9370 -1.0457 21 7 4.1507 0.7475 1.0218 22 6 5.3885 0.1718 0.9145 23 1 5.9333 0.2322 -0.0161 24 6 5.9435 -0.4886 2.0020 25 7 5.2798 -0.5618 3.1363 26 14 7.6323 -1.2734 1.8559 27 1 8.6351 -0.2311 1.5192 28 1 7.6091 -2.3021 0.7851 29 1 7.9951 -1.9114 3.1468 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 0.5532 2.2162 1.3584 36 1 1.9943 1.5365 2.1549 37 1 2.8652 5.9544 2.4029 38 1 2.6067 6.1234 0.6501 39 1 1.8041 8.0124 3.6251 40 1 -1.4345 9.4374 4.0605 41 1 0.2593 9.9407 4.2744 42 1 -1.5478 10.7191 1.9408 43 1 -1.0984 11.7740 3.3020 44 1 0.1460 11.2224 2.1547 45 1 3.9670 4.6428 1.0917 46 1 4.2209 3.1212 1.9823 47 1 5.1578 2.8894 -0.2721 48 1 3.6193 3.4147 -0.9982 49 1 3.6616 0.6936 1.8578 50 1 4.4030 -0.1539 3.2123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037889391.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:22 Heat of formation + Delta-G solvation = 69.080194 kcal Electronic energy + Delta-G solvation = -29772.557928 eV Core-core repulsion = 25837.225581 eV Total energy + Delta-G solvation = -3935.332346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.34276 -40.02440 -37.86591 -35.74434 -34.47818 -33.95879 -32.71553 -31.74991 -31.08518 -29.46916 -28.86966 -27.70335 -24.95935 -24.73210 -23.78352 -23.41183 -22.06251 -21.36322 -20.82878 -19.48849 -18.35883 -17.48558 -17.34149 -17.02650 -16.44286 -15.70122 -15.47036 -15.03894 -14.83630 -14.77201 -14.30393 -14.02764 -13.75496 -13.66761 -13.32216 -13.26239 -13.17322 -12.99666 -12.75878 -12.69829 -12.21310 -12.17108 -12.06914 -11.73501 -11.55807 -11.49016 -11.15584 -10.92868 -10.80107 -10.68994 -10.54593 -10.28104 -10.19337 -10.13350 -9.97372 -9.82626 -9.61211 -9.17370 -9.14805 -8.91297 -8.20781 -7.03070 -6.09912 -3.09927 1.47684 2.14431 2.47526 2.90123 3.33816 3.50520 3.53423 3.71003 4.00005 4.24075 4.34710 4.58987 4.63741 4.66377 4.69301 4.94968 5.04054 5.10022 5.13807 5.23609 5.26390 5.32456 5.39603 5.45839 5.50768 5.55513 5.62769 5.68098 5.74304 5.76519 5.79564 5.89351 5.98607 6.04460 6.13327 6.17411 6.31903 6.36563 6.38673 6.44322 6.53793 6.62133 6.65795 6.75066 6.88159 6.99558 7.73788 7.81179 8.46892 8.48408 8.74876 9.21955 10.08423 10.24335 11.37824 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.016854 B = 0.002613 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.931527 B =10711.104851 C =11712.107514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.122 3.878 6 N -0.605 5.605 7 C 0.516 3.484 8 O -0.534 6.534 9 C -0.053 4.053 10 C -0.002 4.002 11 C -0.048 4.048 12 N -0.296 5.296 13 C 0.113 3.887 14 C -0.167 4.167 15 N -0.088 5.088 16 N -0.238 5.238 17 C 0.114 3.886 18 C -0.150 4.150 19 C 0.184 3.816 20 H 0.051 0.949 21 N -0.729 5.729 22 C -0.326 4.326 23 H 0.063 0.937 24 C -0.045 4.045 25 N -0.944 5.944 26 Si 1.077 2.923 27 H -0.296 1.296 28 H -0.297 1.297 29 H -0.286 1.286 30 H 0.053 0.947 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.190 0.810 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.050 0.950 49 H 0.367 0.633 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.560 19.978 -0.377 21.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.086 0.914 5 C 0.000 4.000 6 N -0.338 5.338 7 C 0.303 3.697 8 O -0.411 6.411 9 C -0.095 4.095 10 C -0.140 4.140 11 C -0.199 4.199 12 N -0.090 5.090 13 C -0.008 4.008 14 C -0.225 4.225 15 N -0.068 5.068 16 N -0.105 5.105 17 C -0.008 4.008 18 C -0.191 4.191 19 C 0.074 3.926 20 H 0.069 0.931 21 N -0.373 5.373 22 C -0.457 4.457 23 H 0.081 0.919 24 C -0.242 4.242 25 N -0.590 5.590 26 Si 0.909 3.091 27 H -0.224 1.224 28 H -0.224 1.224 29 H -0.212 1.212 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.207 0.793 40 H 0.116 0.884 41 H 0.123 0.877 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.089 0.911 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.069 0.931 49 H 0.201 0.799 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.170 19.202 -0.521 20.874 hybrid contribution -0.132 0.875 0.197 0.906 sum -8.302 20.077 -0.325 21.728 Atomic orbital electron populations 1.21853 0.96673 1.01043 1.01496 1.21400 0.94400 0.95759 1.03101 1.21773 0.97338 0.96097 0.97279 0.91355 1.21605 0.98914 0.81703 0.97817 1.48104 1.08585 1.06460 1.70652 1.20227 0.86991 0.85571 0.76960 1.90709 1.14670 1.86284 1.49411 1.19924 0.95105 0.89428 1.05061 1.21272 0.97199 0.99544 0.96018 1.23299 0.94075 0.98073 1.04429 1.47405 1.15207 1.24660 1.21687 1.22062 1.02663 0.83959 0.92150 1.22075 1.03613 0.95986 1.00820 1.78276 1.20577 1.08694 0.99213 1.75121 1.03943 1.08177 1.23233 1.21716 0.79252 1.00038 0.99839 1.22503 1.01808 0.99192 0.95585 1.20149 0.89584 0.90593 0.92275 0.93114 1.42479 1.19376 1.65171 1.10292 1.20013 0.94636 1.31497 0.99581 0.91878 1.25674 1.05556 1.00234 0.92766 1.70897 1.14475 1.47733 1.25870 0.83271 0.74664 0.75875 0.75337 1.22396 1.22410 1.21199 0.92798 0.93220 0.93147 0.91994 0.90989 0.89537 0.91487 0.87279 0.87245 0.79347 0.88378 0.87731 0.90623 0.89949 0.91732 0.91105 0.90104 0.90736 0.93111 0.79877 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.67 37.16 0.36 -1.84 16 2 C -0.11 -1.79 5.19 -26.73 -0.14 -1.93 16 3 C -0.10 -1.75 2.14 -90.50 -0.19 -1.95 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 2.10 5.03 -3.71 -0.02 2.08 16 6 N -0.60 -9.72 2.97 -172.77 -0.51 -10.23 16 7 C 0.52 8.40 7.69 -10.98 -0.08 8.32 16 8 O -0.53 -10.75 15.01 5.56 0.08 -10.67 16 9 C -0.05 -0.65 4.63 -29.03 -0.13 -0.78 16 10 C 0.00 -0.02 6.00 -82.78 -0.50 -0.52 16 11 C -0.05 -0.49 11.49 -17.05 -0.20 -0.68 16 12 N -0.30 -3.09 3.44 -61.27 -0.21 -3.30 16 13 C 0.11 0.60 7.17 -4.05 -0.03 0.57 16 14 C -0.17 -0.79 10.04 37.16 0.37 -0.42 16 15 N -0.09 -1.28 12.91 60.35 0.78 -0.50 16 16 N -0.24 -3.96 11.82 33.29 0.39 -3.57 16 17 C 0.11 1.73 6.08 -3.71 -0.02 1.70 16 18 C -0.15 -2.44 5.78 -26.61 -0.15 -2.59 16 19 C 0.18 3.45 2.53 -67.89 -0.17 3.27 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.59 16 21 N -0.73 -16.58 3.72 -53.39 -0.20 -16.78 16 22 C -0.33 -8.53 9.93 -15.06 -0.15 -8.68 16 23 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 24 C -0.04 -1.24 5.50 -17.43 -0.10 -1.33 16 25 N -0.94 -28.04 13.70 55.49 0.76 -27.28 16 26 Si 1.08 25.10 29.92 -169.99 -5.09 20.01 16 27 H -0.30 -6.59 7.11 56.52 0.40 -6.18 16 28 H -0.30 -6.68 7.11 56.52 0.40 -6.28 16 29 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 30 H 0.05 0.78 6.70 -51.93 -0.35 0.43 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.35 7.70 -51.93 -0.40 0.95 16 35 H 0.09 1.54 5.73 -51.93 -0.30 1.25 16 36 H 0.07 1.25 6.65 -51.93 -0.35 0.91 16 37 H 0.11 0.99 7.92 -51.93 -0.41 0.58 16 38 H 0.11 1.15 7.69 -51.93 -0.40 0.75 16 39 H 0.19 1.09 8.06 -52.48 -0.42 0.66 16 40 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.25 8.07 -51.93 -0.42 -0.17 16 42 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 43 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.07 0.83 5.93 -51.93 -0.31 0.52 16 46 H 0.08 1.44 7.74 -51.93 -0.40 1.03 16 47 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.37 8.76 4.78 -40.82 -0.19 8.56 16 50 H 0.25 7.43 6.77 -40.82 -0.28 7.16 16 LS Contribution 394.73 15.07 5.95 5.95 Total: -1.00 -35.59 394.73 -7.27 -42.87 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -8.08 Total: 8.27 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -1.15 Total: -4.77 kcal Atomic # 7 Polarization: -62.67 SS G_CDS: 1.01 Total: -61.66 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.08 Total: -10.67 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.09 Total: 20.01 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.59 -7.27 -42.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889391.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.947 kcal (2) G-P(sol) polarization free energy of solvation -35.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds