Wall clock time and date at job start Tue Mar 31 2020 18:43:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 H 1.08994 * 109.52423 * 305.08763 * 3 2 1 5 5 C 1.53631 * 109.42911 * 65.29275 * 3 2 1 6 6 N 1.46925 * 108.54077 * 174.72065 * 5 3 2 7 7 C 1.34776 * 120.62874 * 126.36626 * 6 5 3 8 8 O 1.21282 * 119.99940 * 359.72555 * 7 6 5 9 9 C 1.50698 * 120.00035 * 179.71670 * 7 6 5 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 6 11 11 C 1.35346 * 126.75137 * 124.71109 * 10 9 7 12 12 N 1.35306 * 106.17546 * 179.85661 * 11 10 9 13 13 C 1.46504 * 125.86955 * 180.12291 * 12 11 10 14 14 C 1.52997 * 109.47549 * 125.32671 * 13 12 11 15 15 N 1.28715 * 108.26556 * 0.41809 * 12 11 10 16 16 N 1.28632 * 110.17693 * 359.73731 * 15 12 11 17 17 C 1.46927 * 118.73912 * 306.09667 * 6 5 3 18 18 C 1.53185 * 108.77780 * 53.85719 * 17 6 5 19 19 C 1.53033 * 109.31454 * 305.36846 * 18 17 6 20 20 H 1.09004 * 109.45702 * 301.34258 * 19 18 17 21 21 N 1.46500 * 109.46160 * 181.38738 * 19 18 17 22 22 C 1.36933 * 120.00233 * 84.99484 * 21 19 18 23 23 H 1.08001 * 120.00069 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00146 * 180.02562 * 22 21 19 25 25 N 1.31623 * 119.99772 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00370 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47228 * 89.99840 * 26 24 22 28 28 H 1.48494 * 109.47365 * 210.00051 * 26 24 22 29 29 H 1.48501 * 109.47056 * 330.00374 * 26 24 22 30 30 H 1.09007 * 109.46890 * 299.99458 * 1 2 3 31 31 H 1.08994 * 109.47559 * 59.99907 * 1 2 3 32 32 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46881 * 240.00084 * 2 1 3 34 34 H 1.09000 * 109.46969 * 120.00473 * 2 1 3 35 35 H 1.09000 * 109.74016 * 54.98295 * 5 3 2 36 36 H 1.08993 * 109.66294 * 294.41499 * 5 3 2 37 37 H 1.09001 * 109.46665 * 60.00498 * 9 7 6 38 38 H 1.09000 * 109.47722 * 300.00830 * 9 7 6 39 39 H 1.08004 * 126.90957 * 0.02562 * 11 10 9 40 40 H 1.09004 * 109.46780 * 245.32665 * 13 12 11 41 41 H 1.09001 * 109.47087 * 5.32183 * 13 12 11 42 42 H 1.09001 * 109.47434 * 180.02562 * 14 13 12 43 43 H 1.09010 * 109.46664 * 300.00015 * 14 13 12 44 44 H 1.09001 * 109.47325 * 59.99658 * 14 13 12 45 45 H 1.09005 * 109.58299 * 173.65421 * 17 6 5 46 46 H 1.09005 * 109.58309 * 293.92517 * 17 6 5 47 47 H 1.09005 * 109.49453 * 65.31815 * 18 17 6 48 48 H 1.09003 * 109.49625 * 185.41062 * 18 17 6 49 49 H 0.97000 * 120.00011 * 264.99799 * 21 19 18 50 50 H 0.97011 * 119.99711 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8406 5 6 1.6394 2.1262 1.3162 6 7 2.2451 3.4643 1.3509 7 6 1.4858 4.5563 1.5683 8 8 0.2898 4.4404 1.7328 9 6 2.1229 5.9214 1.6074 10 6 1.0643 6.9628 1.8645 11 6 1.0549 7.8794 2.8603 12 7 -0.0787 8.6002 2.6985 13 6 -0.5167 9.7128 3.5450 14 6 -0.7723 10.9454 2.6754 15 7 -0.7093 8.1363 1.6768 16 7 -0.0540 7.1591 1.1570 17 6 3.6953 3.5887 1.1499 18 6 4.0736 2.8881 -0.1588 19 6 3.5652 1.4451 -0.1257 20 1 4.0009 0.9260 0.7281 21 7 3.9541 0.7621 -1.3621 22 6 5.1917 0.1852 -1.4654 23 1 5.8810 0.2333 -0.6353 24 6 5.5604 -0.4615 -2.6370 25 7 4.7206 -0.5197 -3.6489 26 14 7.2484 -1.2491 -2.7778 27 1 7.1771 -2.6585 -2.3156 28 1 7.6942 -1.2145 -4.1938 29 1 8.2157 -0.5004 -1.9358 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0008 1.5394 2.1607 36 1 0.5543 2.2148 1.3679 37 1 2.6075 6.1236 0.6522 38 1 2.8650 5.9535 2.4051 39 1 1.8033 8.0109 3.6279 40 1 -1.4355 9.4361 4.0621 41 1 0.2583 9.9391 4.2773 42 1 -1.0977 11.7734 3.3053 43 1 0.1466 11.2221 2.1583 44 1 -1.5473 10.7191 1.9431 45 1 3.9670 4.6427 1.0921 46 1 4.2210 3.1210 1.9825 47 1 3.6192 3.4148 -0.9980 48 1 5.1578 2.8894 -0.2719 49 1 3.3350 0.7186 -2.1075 50 1 4.9784 -0.9713 -4.4678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037889399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:27 Heat of formation + Delta-G solvation = 66.806296 kcal Electronic energy + Delta-G solvation = -29303.196363 eV Core-core repulsion = 25367.765413 eV Total energy + Delta-G solvation = -3935.430950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.38091 -40.01387 -37.73818 -35.77852 -34.65365 -33.77198 -32.75484 -31.66891 -31.11653 -29.46976 -29.25095 -27.75690 -24.99510 -24.86597 -23.79683 -22.80293 -22.07068 -21.32979 -20.75244 -19.71562 -18.82986 -17.52921 -17.18740 -16.99455 -16.49353 -15.76487 -15.46316 -14.96503 -14.90972 -14.74528 -14.14945 -13.98990 -13.78031 -13.54409 -13.27207 -13.22855 -13.16675 -12.97251 -12.77722 -12.68858 -12.22892 -12.10263 -11.98691 -11.75551 -11.58578 -11.54955 -11.23020 -10.91482 -10.83891 -10.81682 -10.65207 -10.29069 -10.18034 -10.17252 -10.10125 -9.74263 -9.65186 -9.55003 -9.22868 -8.87841 -8.36400 -6.94131 -5.75785 -3.04334 1.43823 2.10820 2.43963 2.81033 3.23891 3.42975 3.48028 3.50036 3.96008 4.19547 4.31730 4.54741 4.58387 4.58587 4.62077 4.87751 5.01209 5.06762 5.10720 5.18552 5.29226 5.32272 5.37283 5.41548 5.49537 5.54074 5.61253 5.64611 5.71416 5.74044 5.76422 5.94014 5.99825 6.08265 6.19153 6.21824 6.37195 6.40453 6.42815 6.45957 6.51516 6.64371 6.74983 6.88075 7.01592 7.11179 7.61223 7.69801 8.37988 8.42408 8.45482 9.53742 10.12044 10.46819 11.46591 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.002298 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.068478 B =12179.808156 C =12941.993348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.112 4.112 3 C -0.104 4.104 4 H 0.070 0.930 5 C 0.121 3.879 6 N -0.609 5.609 7 C 0.517 3.483 8 O -0.531 6.531 9 C -0.054 4.054 10 C -0.003 4.003 11 C -0.049 4.049 12 N -0.296 5.296 13 C 0.113 3.887 14 C -0.168 4.168 15 N -0.087 5.087 16 N -0.237 5.237 17 C 0.107 3.893 18 C -0.152 4.152 19 C 0.184 3.816 20 H 0.047 0.953 21 N -0.720 5.720 22 C -0.237 4.237 23 H 0.069 0.931 24 C -0.014 4.014 25 N -0.931 5.931 26 Si 0.905 3.095 27 H -0.291 1.291 28 H -0.293 1.293 29 H -0.283 1.283 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.083 0.917 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.189 0.811 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.319 19.850 17.857 27.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.124 4.124 4 H 0.089 0.911 5 C -0.002 4.002 6 N -0.342 5.342 7 C 0.304 3.696 8 O -0.407 6.407 9 C -0.096 4.096 10 C -0.141 4.141 11 C -0.200 4.200 12 N -0.090 5.090 13 C -0.008 4.008 14 C -0.225 4.225 15 N -0.066 5.066 16 N -0.103 5.103 17 C -0.017 4.017 18 C -0.194 4.194 19 C 0.073 3.927 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.368 4.368 23 H 0.087 0.913 24 C -0.210 4.210 25 N -0.579 5.579 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.219 1.219 29 H -0.208 1.208 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.108 0.892 37 H 0.130 0.870 38 H 0.127 0.873 39 H 0.206 0.794 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.085 0.915 47 H 0.079 0.921 48 H 0.094 0.906 49 H 0.218 0.782 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -8.061 19.876 17.080 27.419 hybrid contribution 1.892 -0.436 0.368 1.976 sum -6.169 19.440 17.449 26.841 Atomic orbital electron populations 1.21842 0.96831 1.00939 1.01375 1.21448 0.94369 0.95801 1.03350 1.21859 0.97543 0.96195 0.96818 0.91132 1.21800 0.99445 0.81386 0.97532 1.48147 1.08467 1.06678 1.70956 1.20245 0.87019 0.85567 0.76815 1.90720 1.14610 1.86218 1.49121 1.19933 0.95091 0.89398 1.05150 1.21274 0.97254 0.99628 0.95980 1.23267 0.94120 0.98143 1.04467 1.47425 1.15231 1.24657 1.21650 1.22063 1.02610 0.84003 0.92132 1.22081 1.03675 0.95953 1.00840 1.78305 1.20557 1.08658 0.99101 1.75150 1.03938 1.08140 1.23088 1.21873 0.79550 1.01051 0.99206 1.22682 1.02127 0.99335 0.95214 1.20180 0.90857 0.90529 0.91108 0.93500 1.42419 1.16485 1.64420 1.12743 1.19205 0.91840 1.27265 0.98501 0.91261 1.24733 0.98119 1.01630 0.96479 1.69666 1.35228 1.48372 1.04679 0.86230 0.84079 0.79326 0.76765 1.21828 1.21892 1.20848 0.93240 0.92951 0.93255 0.89852 0.92551 0.91867 0.89226 0.87032 0.87342 0.79407 0.88384 0.87770 0.89947 0.91712 0.90572 0.90548 0.91494 0.92087 0.90615 0.78183 0.93549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 9.68 37.16 0.36 -1.88 16 2 C -0.11 -1.86 5.31 -26.73 -0.14 -2.00 16 3 C -0.10 -1.75 1.94 -90.27 -0.17 -1.92 16 4 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 5 C 0.12 1.81 5.35 -3.48 -0.02 1.79 16 6 N -0.61 -8.52 2.97 -172.50 -0.51 -9.03 16 7 C 0.52 7.63 7.69 -10.99 -0.08 7.54 16 8 O -0.53 -10.02 15.01 5.56 0.08 -9.94 16 9 C -0.05 -0.58 4.63 -29.03 -0.13 -0.71 16 10 C 0.00 -0.03 6.00 -82.77 -0.50 -0.53 16 11 C -0.05 -0.45 11.49 -17.05 -0.20 -0.64 16 12 N -0.30 -2.87 3.44 -61.26 -0.21 -3.08 16 13 C 0.11 0.53 7.17 -4.04 -0.03 0.50 16 14 C -0.17 -0.72 10.04 37.16 0.37 -0.35 16 15 N -0.09 -1.22 12.91 60.35 0.78 -0.44 16 16 N -0.24 -3.83 11.82 33.29 0.39 -3.44 16 17 C 0.11 1.29 6.34 -3.71 -0.02 1.27 16 18 C -0.15 -2.46 5.66 -26.62 -0.15 -2.61 16 19 C 0.18 3.43 2.19 -67.89 -0.15 3.28 16 20 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 21 N -0.72 -17.16 4.33 -53.39 -0.23 -17.39 16 22 C -0.24 -6.29 9.93 -15.06 -0.15 -6.44 16 23 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.66 13.06 55.49 0.72 -26.94 16 26 Si 0.90 21.97 29.55 -169.99 -5.02 16.95 16 27 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 30 H 0.05 0.68 6.70 -51.93 -0.35 0.33 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.08 1.65 7.22 -51.93 -0.37 1.27 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.45 5.73 -51.93 -0.30 1.15 16 37 H 0.11 1.10 7.69 -51.93 -0.40 0.70 16 38 H 0.11 0.74 7.92 -51.93 -0.41 0.33 16 39 H 0.19 0.83 8.06 -52.48 -0.42 0.40 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.10 0.16 8.07 -51.93 -0.42 -0.26 16 42 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 44 H 0.08 0.47 8.12 -51.93 -0.42 0.05 16 45 H 0.08 0.71 5.93 -51.93 -0.31 0.40 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 49 H 0.38 9.97 7.51 -40.82 -0.31 9.67 16 50 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -36.03 400.07 -7.40 -43.43 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -8.33 Total: 7.02 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.11 Total: -3.18 kcal Atomic # 7 Polarization: -61.26 SS G_CDS: 0.94 Total: -60.31 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.03 -7.40 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.236 kcal (2) G-P(sol) polarization free energy of solvation -36.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds