Wall clock time and date at job start Tue Mar 31 2020 18:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46956 * 2 1 4 4 H 1.08994 * 109.52423 * 305.08763 * 3 2 1 5 5 C 1.53631 * 109.42911 * 65.29275 * 3 2 1 6 6 N 1.46925 * 108.54077 * 174.72065 * 5 3 2 7 7 C 1.34776 * 120.62874 * 126.36626 * 6 5 3 8 8 O 1.21282 * 119.99940 * 359.72555 * 7 6 5 9 9 C 1.50698 * 120.00035 * 179.71670 * 7 6 5 10 10 C 1.50706 * 109.47294 * 180.02562 * 9 7 6 11 11 C 1.35346 * 126.75137 * 124.71109 * 10 9 7 12 12 N 1.35306 * 106.17546 * 179.85661 * 11 10 9 13 13 C 1.46504 * 125.86955 * 180.12291 * 12 11 10 14 14 C 1.52997 * 109.47549 * 125.32671 * 13 12 11 15 15 N 1.28715 * 108.26556 * 0.41809 * 12 11 10 16 16 N 1.28632 * 110.17693 * 359.73731 * 15 12 11 17 17 C 1.46927 * 118.73912 * 306.09667 * 6 5 3 18 18 C 1.53185 * 108.77780 * 53.85719 * 17 6 5 19 19 C 1.53033 * 109.31454 * 305.36846 * 18 17 6 20 20 H 1.09004 * 109.45702 * 301.34258 * 19 18 17 21 21 N 1.46500 * 109.46160 * 181.38738 * 19 18 17 22 22 C 1.36933 * 120.00233 * 84.99484 * 21 19 18 23 23 H 1.08001 * 120.00069 * 0.02562 * 22 21 19 24 24 C 1.38809 * 120.00146 * 180.02562 * 22 21 19 25 25 N 1.31623 * 119.99772 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00370 * 180.02562 * 24 22 21 27 27 H 1.48504 * 109.47228 * 89.99840 * 26 24 22 28 28 H 1.48494 * 109.47365 * 210.00051 * 26 24 22 29 29 H 1.48501 * 109.47056 * 330.00374 * 26 24 22 30 30 H 1.09007 * 109.46890 * 299.99458 * 1 2 3 31 31 H 1.08994 * 109.47559 * 59.99907 * 1 2 3 32 32 H 1.09000 * 109.47262 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46881 * 240.00084 * 2 1 3 34 34 H 1.09000 * 109.46969 * 120.00473 * 2 1 3 35 35 H 1.09000 * 109.74016 * 54.98295 * 5 3 2 36 36 H 1.08993 * 109.66294 * 294.41499 * 5 3 2 37 37 H 1.09001 * 109.46665 * 60.00498 * 9 7 6 38 38 H 1.09000 * 109.47722 * 300.00830 * 9 7 6 39 39 H 1.08004 * 126.90957 * 0.02562 * 11 10 9 40 40 H 1.09004 * 109.46780 * 245.32665 * 13 12 11 41 41 H 1.09001 * 109.47087 * 5.32183 * 13 12 11 42 42 H 1.09001 * 109.47434 * 180.02562 * 14 13 12 43 43 H 1.09010 * 109.46664 * 300.00015 * 14 13 12 44 44 H 1.09001 * 109.47325 * 59.99658 * 14 13 12 45 45 H 1.09005 * 109.58299 * 173.65421 * 17 6 5 46 46 H 1.09005 * 109.58309 * 293.92517 * 17 6 5 47 47 H 1.09005 * 109.49453 * 65.31815 * 18 17 6 48 48 H 1.09003 * 109.49625 * 185.41062 * 18 17 6 49 49 H 0.97000 * 120.00011 * 264.99799 * 21 19 18 50 50 H 0.97011 * 119.99711 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9827 -0.8406 5 6 1.6394 2.1262 1.3162 6 7 2.2451 3.4643 1.3509 7 6 1.4858 4.5563 1.5683 8 8 0.2898 4.4404 1.7328 9 6 2.1229 5.9214 1.6074 10 6 1.0643 6.9628 1.8645 11 6 1.0549 7.8794 2.8603 12 7 -0.0787 8.6002 2.6985 13 6 -0.5167 9.7128 3.5450 14 6 -0.7723 10.9454 2.6754 15 7 -0.7093 8.1363 1.6768 16 7 -0.0540 7.1591 1.1570 17 6 3.6953 3.5887 1.1499 18 6 4.0736 2.8881 -0.1588 19 6 3.5652 1.4451 -0.1257 20 1 4.0009 0.9260 0.7281 21 7 3.9541 0.7621 -1.3621 22 6 5.1917 0.1852 -1.4654 23 1 5.8810 0.2333 -0.6353 24 6 5.5604 -0.4615 -2.6370 25 7 4.7206 -0.5197 -3.6489 26 14 7.2484 -1.2491 -2.7778 27 1 7.1771 -2.6585 -2.3156 28 1 7.6942 -1.2145 -4.1938 29 1 8.2157 -0.5004 -1.9358 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0008 1.5394 2.1607 36 1 0.5543 2.2148 1.3679 37 1 2.6075 6.1236 0.6522 38 1 2.8650 5.9535 2.4051 39 1 1.8033 8.0109 3.6279 40 1 -1.4355 9.4361 4.0621 41 1 0.2583 9.9391 4.2773 42 1 -1.0977 11.7734 3.3053 43 1 0.1466 11.2221 2.1583 44 1 -1.5473 10.7191 1.9431 45 1 3.9670 4.6427 1.0921 46 1 4.2210 3.1210 1.9825 47 1 3.6192 3.4148 -0.9980 48 1 5.1578 2.8894 -0.2719 49 1 3.3350 0.7186 -2.1075 50 1 4.9784 -0.9713 -4.4678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037889399.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:26 Heat of formation + Delta-G solvation = 41.830934 kcal Electronic energy + Delta-G solvation = -29304.279376 eV Core-core repulsion = 25367.765413 eV Total energy + Delta-G solvation = -3936.513963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.16079 -41.19844 -39.08127 -36.40742 -36.10053 -35.31774 -33.60127 -33.39407 -31.69625 -31.00243 -30.42817 -28.85960 -26.46530 -25.53021 -25.11437 -24.35138 -22.84922 -22.24485 -22.04427 -21.05964 -19.95791 -19.00371 -18.21129 -18.13588 -17.27004 -16.88013 -16.67188 -16.44906 -15.75306 -15.64088 -15.42624 -15.27327 -15.02003 -14.80223 -14.68687 -14.39003 -14.24111 -14.05311 -13.62863 -13.51432 -13.27874 -13.06728 -12.99712 -12.94316 -12.81754 -12.63653 -12.57731 -12.51248 -12.28588 -12.12472 -12.00089 -11.80944 -11.61236 -11.55937 -11.49433 -11.05179 -10.95067 -10.89488 -10.71147 -10.06657 -9.55724 -8.92238 -7.87648 -5.15106 0.73230 1.50193 1.50321 1.51421 1.59476 1.61951 1.72665 2.19303 2.60684 3.35625 3.45759 3.59433 3.76375 3.82349 3.92306 3.94411 3.99987 4.07498 4.13990 4.23621 4.31022 4.32780 4.39691 4.45969 4.46422 4.50623 4.58079 4.66329 4.76010 4.76675 4.80867 4.84765 4.90862 4.95046 5.03449 5.04870 5.10948 5.14522 5.18829 5.27260 5.33312 5.42803 5.49865 5.56360 5.63733 5.72939 5.79709 6.33337 6.52781 7.28763 7.39580 7.62625 8.16725 8.39713 9.36044 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.002298 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.068478 B =12179.808156 C =12941.993348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C -0.093 4.093 4 H 0.044 0.956 5 C 0.128 3.872 6 N -0.609 5.609 7 C 0.512 3.488 8 O -0.579 6.579 9 C -0.047 4.047 10 C -0.035 4.035 11 C -0.024 4.024 12 N -0.289 5.289 13 C 0.102 3.898 14 C -0.164 4.164 15 N -0.130 5.130 16 N -0.298 5.298 17 C 0.114 3.886 18 C -0.145 4.145 19 C 0.178 3.822 20 H 0.051 0.949 21 N -0.733 5.733 22 C -0.225 4.225 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.973 5.973 26 Si 0.969 3.031 27 H -0.292 1.292 28 H -0.303 1.303 29 H -0.265 1.265 30 H 0.061 0.939 31 H 0.041 0.959 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.159 0.841 39 H 0.243 0.757 40 H 0.105 0.895 41 H 0.148 0.852 42 H 0.110 0.890 43 H 0.058 0.942 44 H 0.048 0.952 45 H 0.116 0.884 46 H 0.092 0.908 47 H 0.041 0.959 48 H 0.070 0.930 49 H 0.368 0.632 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 21.859 21.756 31.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 C -0.113 4.113 4 H 0.063 0.937 5 C 0.005 3.995 6 N -0.342 5.342 7 C 0.301 3.699 8 O -0.458 6.458 9 C -0.088 4.088 10 C -0.175 4.175 11 C -0.176 4.176 12 N -0.083 5.083 13 C -0.017 4.017 14 C -0.222 4.222 15 N -0.109 5.109 16 N -0.163 5.163 17 C -0.009 4.009 18 C -0.186 4.186 19 C 0.070 3.930 20 H 0.069 0.931 21 N -0.371 5.371 22 C -0.357 4.357 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.624 5.624 26 Si 0.799 3.201 27 H -0.219 1.219 28 H -0.230 1.230 29 H -0.190 1.190 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.101 0.899 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.177 0.823 39 H 0.259 0.741 40 H 0.123 0.877 41 H 0.166 0.834 42 H 0.129 0.871 43 H 0.077 0.923 44 H 0.067 0.933 45 H 0.134 0.866 46 H 0.110 0.890 47 H 0.059 0.941 48 H 0.089 0.911 49 H 0.200 0.800 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -5.989 21.937 21.031 30.974 hybrid contribution 1.191 -0.986 -0.737 1.713 sum -4.799 20.951 20.294 29.560 Atomic orbital electron populations 1.21773 0.95282 1.01781 1.01449 1.21354 0.95734 0.95475 1.01933 1.21707 0.96152 0.96195 0.97257 0.93698 1.21625 0.98922 0.82388 0.96576 1.48236 1.09272 1.06127 1.70539 1.21026 0.86498 0.86946 0.75461 1.90704 1.16876 1.86981 1.51271 1.20067 0.95257 0.85985 1.07482 1.21771 0.97169 1.01360 0.97161 1.24043 0.93994 0.95861 1.03716 1.47893 1.14928 1.24831 1.20630 1.22572 1.04574 0.82451 0.92103 1.22059 1.02504 0.96884 1.00722 1.78203 1.21837 1.09499 1.01323 1.75067 1.06074 1.09696 1.25475 1.21984 0.78332 1.03263 0.97278 1.22484 1.01401 0.97432 0.97252 1.20439 0.92008 0.91682 0.88881 0.93125 1.42628 1.15526 1.65038 1.13938 1.19617 0.92544 1.25353 0.98229 0.90136 1.25520 1.01665 1.03466 0.96652 1.69842 1.37165 1.50294 1.05133 0.85199 0.80437 0.78332 0.76170 1.21925 1.22977 1.18979 0.91981 0.94023 0.92035 0.93563 0.91469 0.89938 0.90544 0.86204 0.82342 0.74061 0.87707 0.83441 0.87131 0.92310 0.93317 0.86571 0.88985 0.94055 0.91113 0.80016 0.94439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.33 9.68 71.98 0.70 -3.64 16 2 C -0.11 -3.63 5.31 30.59 0.16 -3.47 16 3 C -0.09 -3.16 1.94 -10.57 -0.02 -3.18 16 4 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 5 C 0.13 3.70 5.35 86.51 0.46 4.16 16 6 N -0.61 -15.69 2.97 -818.06 -2.43 -18.12 16 7 C 0.51 14.22 7.69 87.66 0.67 14.90 16 8 O -0.58 -21.90 15.01 -3.04 -0.05 -21.95 16 9 C -0.05 -0.85 4.63 29.10 0.13 -0.72 16 10 C -0.03 -0.81 6.00 41.60 0.25 -0.56 16 11 C -0.02 -0.35 11.49 83.49 0.96 0.61 16 12 N -0.29 -5.03 3.44 -347.73 -1.20 -6.22 16 13 C 0.10 0.65 7.17 86.38 0.62 1.27 16 14 C -0.16 -1.14 10.04 71.98 0.72 -0.41 16 15 N -0.13 -3.70 12.91 37.02 0.48 -3.22 16 16 N -0.30 -9.78 11.82 -48.60 -0.57 -10.36 16 17 C 0.11 2.34 6.34 86.36 0.55 2.88 16 18 C -0.14 -4.47 5.66 30.67 0.17 -4.30 16 19 C 0.18 6.58 2.19 45.02 0.10 6.68 16 20 H 0.05 1.85 8.08 -2.38 -0.02 1.83 16 21 N -0.73 -35.66 4.33 -322.83 -1.40 -37.05 16 22 C -0.23 -11.99 9.93 84.03 0.83 -11.15 16 23 H 0.08 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 25 N -0.97 -59.78 13.06 21.65 0.28 -59.50 16 26 Si 0.97 45.59 29.55 68.60 2.03 47.62 16 27 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 28 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 29 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 30 H 0.06 1.69 6.70 -2.38 -0.02 1.67 16 31 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.05 1.92 7.22 -2.39 -0.02 1.90 16 34 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.46 5.73 -2.39 -0.01 2.45 16 37 H 0.12 1.98 7.69 -2.39 -0.02 1.96 16 38 H 0.16 1.19 7.92 -2.39 -0.02 1.18 16 39 H 0.24 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.15 -0.31 8.07 -2.39 -0.02 -0.33 16 42 H 0.11 0.12 8.14 -2.39 -0.02 0.11 16 43 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 44 H 0.05 0.61 8.12 -2.39 -0.02 0.59 16 45 H 0.12 1.54 5.93 -2.38 -0.01 1.53 16 46 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 49 H 0.37 20.08 7.51 -92.71 -0.70 19.38 16 50 H 0.25 14.87 8.31 -92.70 -0.77 14.10 16 Total: -1.00 -85.87 400.07 4.17 -81.71 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.24 Total: 28.16 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 6.78 Total: -1.06 kcal Atomic # 7 Polarization: -129.64 SS G_CDS: -4.83 Total: -134.47 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.05 Total: -21.95 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.62 kcal Total: -85.87 4.17 -81.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889399.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.537 kcal (2) G-P(sol) polarization free energy of solvation -85.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds