Wall clock time and date at job start Tue Mar 31 2020 18:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08998 * 109.50089 * 54.93246 * 3 2 1 5 5 C 1.52766 * 109.55910 * 294.96136 * 3 2 1 6 6 N 1.46922 * 109.00423 * 185.55293 * 5 3 2 7 7 C 1.34777 * 120.63244 * 233.58279 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72887 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.72194 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.35350 * 126.74854 * 125.00031 * 10 9 7 12 12 N 1.35310 * 106.17383 * 180.02562 * 11 10 9 13 13 C 1.46501 * 125.86896 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47330 * 125.00280 * 13 12 11 15 15 N 1.28715 * 108.26730 * 0.02562 * 12 11 10 16 16 N 1.28641 * 110.17180 * 359.71951 * 15 12 11 17 17 C 1.46926 * 118.74006 * 53.31495 * 6 5 3 18 18 C 1.53197 * 108.77484 * 306.64082 * 17 6 5 19 19 C 1.53037 * 109.49688 * 175.00301 * 3 2 1 20 20 H 1.09004 * 109.44815 * 301.32701 * 19 3 2 21 21 N 1.46500 * 109.46359 * 61.28827 * 19 3 2 22 22 C 1.36941 * 119.99941 * 205.06683 * 21 19 3 23 23 H 1.07998 * 120.00247 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99603 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00024 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99832 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46805 * 60.00552 * 26 24 22 28 28 H 1.48501 * 109.47301 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47494 * 300.00583 * 26 24 22 30 30 H 1.08998 * 109.47092 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47097 * 300.00591 * 1 2 3 33 33 H 1.08999 * 109.47097 * 239.99409 * 2 1 3 34 34 H 1.09002 * 109.46645 * 119.99597 * 2 1 3 35 35 H 1.09003 * 109.51011 * 65.67521 * 5 3 2 36 36 H 1.08996 * 109.43207 * 305.38992 * 5 3 2 37 37 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 38 38 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 39 39 H 1.08003 * 126.91705 * 0.03383 * 11 10 9 40 40 H 1.09000 * 109.47508 * 245.00048 * 13 12 11 41 41 H 1.09000 * 109.47093 * 4.99820 * 13 12 11 42 42 H 1.09001 * 109.47042 * 299.99950 * 14 13 12 43 43 H 1.09000 * 109.47408 * 59.99733 * 14 13 12 44 44 H 1.08999 * 109.47324 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.59151 * 66.42410 * 17 6 5 46 46 H 1.09005 * 109.59202 * 186.71064 * 17 6 5 47 47 H 1.09000 * 109.49544 * 174.58699 * 18 17 6 48 48 H 1.08997 * 109.49415 * 294.65077 * 18 17 6 49 49 H 0.96993 * 120.00068 * 25.07314 * 21 19 3 50 50 H 0.97003 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 0.8409 5 6 1.6378 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2898 4.4405 -1.7318 9 6 2.1228 5.9216 -1.6055 10 6 1.0639 6.9631 -1.8606 11 6 0.8001 8.0526 -1.1020 12 7 -0.2242 8.6954 -1.7089 13 6 -0.8546 9.9344 -1.2464 14 6 -0.8179 10.9747 -2.3676 15 7 -0.5504 8.0308 -2.7618 16 7 0.2026 6.9950 -2.8836 17 6 3.6953 3.5886 -1.1500 18 6 4.0737 2.8880 0.1587 19 6 3.5652 1.4450 0.1257 20 1 3.8544 0.9369 1.0457 21 7 4.1507 0.7473 -1.0218 22 6 5.3880 0.1704 -0.9139 23 1 5.9320 0.2294 0.0172 24 6 5.9429 -0.4902 -2.0014 25 7 5.2801 -0.5616 -3.1363 26 14 7.6309 -1.2766 -1.8545 27 1 7.6061 -2.3057 -0.7841 28 1 7.9944 -1.9135 -3.1458 29 1 8.6344 -0.2353 -1.5169 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.5524 2.2172 -1.3494 36 1 1.9923 1.5357 -2.1491 37 1 2.8648 5.9544 -2.4033 38 1 2.6074 6.1231 -0.6501 39 1 1.3057 8.3493 -0.1949 40 1 -1.8899 9.7342 -0.9703 41 1 -0.3146 10.3152 -0.3795 42 1 0.2173 11.1749 -2.6437 43 1 -1.3580 10.5939 -3.2345 44 1 -1.2865 11.8967 -2.0233 45 1 4.2211 3.1187 -1.9812 46 1 3.9675 4.6427 -1.0947 47 1 5.1579 2.8893 0.2718 48 1 3.6198 3.4151 0.9979 49 1 3.6620 0.6941 -1.8580 50 1 5.6680 -1.0229 -3.8963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037889400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:31 Heat of formation + Delta-G solvation = 68.891396 kcal Electronic energy + Delta-G solvation = -29717.564352 eV Core-core repulsion = 25782.223819 eV Total energy + Delta-G solvation = -3935.340533 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.30913 -39.94313 -37.77555 -35.71488 -34.35458 -33.73249 -32.67007 -31.64029 -31.05716 -29.45461 -28.99530 -27.74464 -24.93664 -24.75395 -23.74954 -23.43361 -22.02664 -21.31423 -20.72986 -19.40484 -18.14881 -17.43013 -17.35888 -16.90936 -16.38262 -15.62512 -15.39118 -14.86421 -14.77723 -14.61441 -14.29756 -14.00579 -13.85996 -13.43284 -13.29293 -13.21667 -13.11146 -12.88551 -12.73820 -12.44614 -12.19054 -12.13672 -12.05472 -11.68831 -11.52878 -11.31656 -11.04983 -10.93406 -10.78102 -10.75501 -10.67059 -10.25652 -10.22731 -10.16356 -10.10125 -9.74182 -9.54460 -9.51433 -9.12939 -8.89335 -8.11224 -6.95396 -5.76773 -3.05303 1.50656 2.17009 2.52198 2.97988 3.41663 3.42790 3.47959 3.49069 4.02013 4.27220 4.36361 4.58844 4.60488 4.66225 4.75943 4.98462 5.05691 5.13213 5.20202 5.27302 5.34316 5.39078 5.45519 5.53201 5.57683 5.60233 5.62083 5.75365 5.79686 5.84731 5.89103 5.96514 6.05472 6.16117 6.20577 6.26054 6.41330 6.43848 6.45714 6.47181 6.61579 6.69321 6.75412 6.82526 6.99001 7.07952 7.69480 7.82965 8.41635 8.52302 8.54877 9.53109 10.10468 10.45481 11.45434 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.002578 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.784155 B =10859.154918 C =11706.608492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.103 4.103 4 H 0.064 0.936 5 C 0.121 3.879 6 N -0.603 5.603 7 C 0.515 3.485 8 O -0.536 6.536 9 C -0.054 4.054 10 C 0.000 4.000 11 C -0.050 4.050 12 N -0.296 5.296 13 C 0.113 3.887 14 C -0.167 4.167 15 N -0.088 5.088 16 N -0.237 5.237 17 C 0.113 3.887 18 C -0.150 4.150 19 C 0.178 3.822 20 H 0.050 0.950 21 N -0.718 5.718 22 C -0.238 4.238 23 H 0.068 0.932 24 C -0.011 4.011 25 N -0.931 5.931 26 Si 0.904 3.096 27 H -0.287 1.287 28 H -0.292 1.292 29 H -0.287 1.287 30 H 0.054 0.946 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.189 0.811 40 H 0.098 0.902 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.073 0.927 48 H 0.048 0.952 49 H 0.384 0.616 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 20.573 8.339 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.123 4.123 4 H 0.083 0.917 5 C -0.002 4.002 6 N -0.336 5.336 7 C 0.302 3.698 8 O -0.413 6.413 9 C -0.096 4.096 10 C -0.139 4.139 11 C -0.201 4.201 12 N -0.090 5.090 13 C -0.008 4.008 14 C -0.225 4.225 15 N -0.067 5.067 16 N -0.104 5.104 17 C -0.010 4.010 18 C -0.191 4.191 19 C 0.068 3.932 20 H 0.068 0.932 21 N -0.361 5.361 22 C -0.369 4.369 23 H 0.086 0.914 24 C -0.208 4.208 25 N -0.580 5.580 26 Si 0.735 3.265 27 H -0.214 1.214 28 H -0.218 1.218 29 H -0.214 1.214 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.126 0.874 39 H 0.206 0.794 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.087 0.913 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.220 0.780 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.354 20.391 7.057 23.933 hybrid contribution 1.695 -0.284 0.881 1.931 sum -8.659 20.108 7.938 23.287 Atomic orbital electron populations 1.21853 0.96867 1.00981 1.01359 1.21413 0.94233 0.95810 1.03309 1.21666 0.97334 0.96088 0.97186 0.91743 1.21552 0.98749 0.81732 0.98118 1.48089 1.08547 1.06499 1.70487 1.20198 0.87024 0.85586 0.76976 1.90704 1.14825 1.86354 1.49370 1.19932 0.95376 0.89641 1.04621 1.21287 1.00636 0.97132 0.94799 1.23270 0.96375 0.97221 1.03215 1.47408 1.23566 1.19876 1.18168 1.22051 0.99709 0.80419 0.98616 1.22079 1.03620 0.98041 0.98789 1.78295 1.21249 1.02377 1.04810 1.75140 1.03660 1.10607 1.20962 1.21740 0.79354 0.99908 0.99993 1.22520 1.01722 0.99337 0.95489 1.20214 0.89769 0.90650 0.92569 0.93244 1.42472 1.19095 1.63914 1.10586 1.19160 0.93686 1.27076 0.96976 0.91357 1.24704 0.98503 1.01501 0.96050 1.69640 1.38153 1.47980 1.02183 0.86325 0.84425 0.79186 0.76536 1.21423 1.21843 1.21410 0.92732 0.93209 0.93469 0.90491 0.92109 0.89714 0.90887 0.87176 0.87371 0.79425 0.88407 0.87790 0.91730 0.90593 0.89984 0.89676 0.91264 0.90792 0.93377 0.78039 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.67 37.16 0.36 -1.81 16 2 C -0.11 -1.79 5.19 -26.73 -0.14 -1.92 16 3 C -0.10 -1.68 2.12 -90.72 -0.19 -1.88 16 4 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 5 C 0.12 2.10 5.01 -3.93 -0.02 2.08 16 6 N -0.60 -9.78 2.98 -173.03 -0.52 -10.29 16 7 C 0.52 8.47 7.69 -10.98 -0.08 8.38 16 8 O -0.54 -10.87 15.02 5.56 0.08 -10.79 16 9 C -0.05 -0.66 4.63 -29.03 -0.13 -0.79 16 10 C 0.00 0.00 6.00 -82.78 -0.50 -0.49 16 11 C -0.05 -0.50 11.49 -17.05 -0.20 -0.70 16 12 N -0.30 -3.09 3.44 -61.26 -0.21 -3.30 16 13 C 0.11 0.60 7.17 -4.04 -0.03 0.57 16 14 C -0.17 -0.80 10.04 37.16 0.37 -0.43 16 15 N -0.09 -1.30 12.92 60.35 0.78 -0.52 16 16 N -0.24 -4.03 11.83 33.29 0.39 -3.63 16 17 C 0.11 1.70 6.09 -3.71 -0.02 1.68 16 18 C -0.15 -2.34 5.78 -26.61 -0.15 -2.50 16 19 C 0.18 3.25 2.53 -67.89 -0.17 3.08 16 20 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 21 N -0.72 -16.30 3.72 -53.39 -0.20 -16.50 16 22 C -0.24 -6.13 9.93 -15.06 -0.15 -6.28 16 23 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -27.04 13.06 55.49 0.72 -26.31 16 26 Si 0.90 21.68 29.55 -169.99 -5.02 16.66 16 27 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 28 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 29 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 30 H 0.05 0.79 6.70 -51.93 -0.35 0.44 16 31 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.46 7.70 -51.93 -0.40 1.06 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.52 5.72 -51.93 -0.30 1.23 16 36 H 0.07 1.42 6.64 -51.93 -0.34 1.08 16 37 H 0.11 1.23 7.94 -51.93 -0.41 0.81 16 38 H 0.11 0.93 7.68 -51.93 -0.40 0.54 16 39 H 0.19 1.01 8.06 -52.48 -0.42 0.59 16 40 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 0.23 8.07 -51.93 -0.42 -0.19 16 42 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.08 0.50 8.12 -51.93 -0.42 0.08 16 44 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 45 H 0.09 1.55 7.74 -51.93 -0.40 1.15 16 46 H 0.07 0.80 5.93 -51.93 -0.31 0.50 16 47 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.38 9.46 5.95 -40.82 -0.24 9.22 16 50 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 396.42 15.07 5.97 5.97 Total: -1.00 -34.79 396.42 -7.33 -42.12 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -8.19 Total: 8.00 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: -1.15 Total: -1.41 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.97 Total: -60.55 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.79 -7.33 -42.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.013 kcal (2) G-P(sol) polarization free energy of solvation -34.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds