Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47252 * 2 1 4 4 H 1.08998 * 109.50089 * 54.93246 * 3 2 1 5 5 C 1.52766 * 109.55910 * 294.96136 * 3 2 1 6 6 N 1.46922 * 109.00423 * 185.55293 * 5 3 2 7 7 C 1.34777 * 120.63244 * 233.58279 * 6 5 3 8 8 O 1.21278 * 119.99854 * 359.72887 * 7 6 5 9 9 C 1.50703 * 120.00161 * 179.72194 * 7 6 5 10 10 C 1.50701 * 109.47064 * 180.02562 * 9 7 6 11 11 C 1.35350 * 126.74854 * 125.00031 * 10 9 7 12 12 N 1.35310 * 106.17383 * 180.02562 * 11 10 9 13 13 C 1.46501 * 125.86896 * 179.97438 * 12 11 10 14 14 C 1.52998 * 109.47330 * 125.00280 * 13 12 11 15 15 N 1.28715 * 108.26730 * 0.02562 * 12 11 10 16 16 N 1.28641 * 110.17180 * 359.71951 * 15 12 11 17 17 C 1.46926 * 118.74006 * 53.31495 * 6 5 3 18 18 C 1.53197 * 108.77484 * 306.64082 * 17 6 5 19 19 C 1.53037 * 109.49688 * 175.00301 * 3 2 1 20 20 H 1.09004 * 109.44815 * 301.32701 * 19 3 2 21 21 N 1.46500 * 109.46359 * 61.28827 * 19 3 2 22 22 C 1.36941 * 119.99941 * 205.06683 * 21 19 3 23 23 H 1.07998 * 120.00247 * 0.02562 * 22 21 19 24 24 C 1.38815 * 119.99603 * 180.02562 * 22 21 19 25 25 N 1.31619 * 120.00024 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 119.99832 * 179.97438 * 24 22 21 27 27 H 1.48509 * 109.46805 * 60.00552 * 26 24 22 28 28 H 1.48501 * 109.47301 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47494 * 300.00583 * 26 24 22 30 30 H 1.08998 * 109.47092 * 60.00207 * 1 2 3 31 31 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47097 * 300.00591 * 1 2 3 33 33 H 1.08999 * 109.47097 * 239.99409 * 2 1 3 34 34 H 1.09002 * 109.46645 * 119.99597 * 2 1 3 35 35 H 1.09003 * 109.51011 * 65.67521 * 5 3 2 36 36 H 1.08996 * 109.43207 * 305.38992 * 5 3 2 37 37 H 1.09002 * 109.47152 * 60.00245 * 9 7 6 38 38 H 1.09001 * 109.46980 * 300.00345 * 9 7 6 39 39 H 1.08003 * 126.91705 * 0.03383 * 11 10 9 40 40 H 1.09000 * 109.47508 * 245.00048 * 13 12 11 41 41 H 1.09000 * 109.47093 * 4.99820 * 13 12 11 42 42 H 1.09001 * 109.47042 * 299.99950 * 14 13 12 43 43 H 1.09000 * 109.47408 * 59.99733 * 14 13 12 44 44 H 1.08999 * 109.47324 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.59151 * 66.42410 * 17 6 5 46 46 H 1.09005 * 109.59202 * 186.71064 * 17 6 5 47 47 H 1.09000 * 109.49544 * 174.58699 * 18 17 6 48 48 H 1.08997 * 109.49415 * 294.65077 * 18 17 6 49 49 H 0.96993 * 120.00068 * 25.07314 * 21 19 3 50 50 H 0.97003 * 119.99993 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6048 1.9823 0.8409 5 6 1.6378 2.1272 -1.3050 6 7 2.2452 3.4642 -1.3509 7 6 1.4858 4.5564 -1.5675 8 8 0.2898 4.4405 -1.7318 9 6 2.1228 5.9216 -1.6055 10 6 1.0639 6.9631 -1.8606 11 6 0.8001 8.0526 -1.1020 12 7 -0.2242 8.6954 -1.7089 13 6 -0.8546 9.9344 -1.2464 14 6 -0.8179 10.9747 -2.3676 15 7 -0.5504 8.0308 -2.7618 16 7 0.2026 6.9950 -2.8836 17 6 3.6953 3.5886 -1.1500 18 6 4.0737 2.8880 0.1587 19 6 3.5652 1.4450 0.1257 20 1 3.8544 0.9369 1.0457 21 7 4.1507 0.7473 -1.0218 22 6 5.3880 0.1704 -0.9139 23 1 5.9320 0.2294 0.0172 24 6 5.9429 -0.4902 -2.0014 25 7 5.2801 -0.5616 -3.1363 26 14 7.6309 -1.2766 -1.8545 27 1 7.6061 -2.3057 -0.7841 28 1 7.9944 -1.9135 -3.1458 29 1 8.6344 -0.2353 -1.5169 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 0.5524 2.2172 -1.3494 36 1 1.9923 1.5357 -2.1491 37 1 2.8648 5.9544 -2.4033 38 1 2.6074 6.1231 -0.6501 39 1 1.3057 8.3493 -0.1949 40 1 -1.8899 9.7342 -0.9703 41 1 -0.3146 10.3152 -0.3795 42 1 0.2173 11.1749 -2.6437 43 1 -1.3580 10.5939 -3.2345 44 1 -1.2865 11.8967 -2.0233 45 1 4.2211 3.1187 -1.9812 46 1 3.9675 4.6427 -1.0947 47 1 5.1579 2.8893 0.2718 48 1 3.6198 3.4151 0.9979 49 1 3.6620 0.6941 -1.8580 50 1 5.6680 -1.0229 -3.8963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037889400.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = 45.459785 kcal Electronic energy + Delta-G solvation = -29718.580423 eV Core-core repulsion = 25782.223819 eV Total energy + Delta-G solvation = -3936.356604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.16229 -41.26989 -39.16575 -36.39497 -35.80494 -35.34937 -33.60109 -33.33431 -31.69379 -30.93817 -30.34031 -28.90136 -26.23880 -25.52740 -25.30613 -24.97097 -22.87805 -22.23361 -22.01859 -20.63320 -19.53262 -19.18308 -18.19086 -18.10747 -17.25457 -16.86611 -16.66130 -16.29348 -15.84687 -15.68662 -15.54736 -15.27692 -15.08923 -14.75258 -14.60451 -14.41203 -14.25506 -14.03557 -13.63152 -13.53115 -13.32935 -13.06278 -12.96086 -12.86192 -12.77984 -12.61546 -12.59184 -12.30492 -12.28649 -12.14190 -12.02612 -11.79049 -11.61750 -11.55039 -11.41190 -11.06572 -10.94298 -10.85785 -10.69440 -10.06727 -9.49541 -8.86986 -7.84299 -5.10312 0.72890 1.49637 1.51831 1.53217 1.59075 1.62231 1.73909 2.19892 2.63211 3.34802 3.49446 3.60080 3.76745 3.91043 3.93394 3.95705 4.00325 4.09863 4.15307 4.22037 4.31062 4.35116 4.44042 4.46367 4.47454 4.52037 4.57437 4.65039 4.74344 4.76617 4.79216 4.90932 4.94003 5.03310 5.04684 5.09792 5.15103 5.19931 5.26735 5.27326 5.34475 5.39904 5.43787 5.54868 5.65269 5.75049 5.79764 6.37048 6.57618 7.29019 7.44377 7.62233 8.22380 8.44946 9.38935 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.017455 B = 0.002578 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.784155 B =10859.154918 C =11706.608492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.106 4.106 3 C -0.090 4.090 4 H 0.086 0.914 5 C 0.127 3.873 6 N -0.603 5.603 7 C 0.511 3.489 8 O -0.580 6.580 9 C -0.046 4.046 10 C -0.033 4.033 11 C -0.024 4.024 12 N -0.288 5.288 13 C 0.101 3.899 14 C -0.164 4.164 15 N -0.128 5.128 16 N -0.298 5.298 17 C 0.117 3.883 18 C -0.141 4.141 19 C 0.170 3.830 20 H 0.048 0.952 21 N -0.725 5.725 22 C -0.223 4.223 23 H 0.077 0.923 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.964 3.036 27 H -0.283 1.283 28 H -0.305 1.305 29 H -0.277 1.277 30 H 0.044 0.956 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.041 0.959 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.040 0.960 37 H 0.119 0.881 38 H 0.156 0.844 39 H 0.243 0.757 40 H 0.105 0.895 41 H 0.147 0.853 42 H 0.058 0.942 43 H 0.048 0.952 44 H 0.111 0.889 45 H 0.047 0.953 46 H 0.116 0.884 47 H 0.069 0.931 48 H 0.082 0.918 49 H 0.372 0.628 50 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.156 23.518 11.993 27.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.144 4.144 3 C -0.109 4.109 4 H 0.104 0.896 5 C 0.004 3.996 6 N -0.335 5.335 7 C 0.300 3.700 8 O -0.460 6.460 9 C -0.087 4.087 10 C -0.173 4.173 11 C -0.176 4.176 12 N -0.082 5.082 13 C -0.017 4.017 14 C -0.221 4.221 15 N -0.107 5.107 16 N -0.163 5.163 17 C -0.005 4.005 18 C -0.181 4.181 19 C 0.061 3.939 20 H 0.066 0.934 21 N -0.366 5.366 22 C -0.355 4.355 23 H 0.095 0.905 24 C -0.268 4.268 25 N -0.623 5.623 26 Si 0.794 3.206 27 H -0.209 1.209 28 H -0.232 1.232 29 H -0.203 1.203 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.137 0.863 38 H 0.174 0.826 39 H 0.259 0.741 40 H 0.123 0.877 41 H 0.165 0.835 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.129 0.871 45 H 0.065 0.935 46 H 0.134 0.866 47 H 0.088 0.912 48 H 0.101 0.899 49 H 0.205 0.795 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -9.608 23.384 10.754 27.474 hybrid contribution 1.369 -1.109 -0.159 1.768 sum -8.239 22.276 10.596 26.007 Atomic orbital electron populations 1.21779 0.95051 1.01801 1.01686 1.21346 0.95828 0.95570 1.01671 1.21561 0.96135 0.96112 0.97132 0.89588 1.21312 0.98168 0.82577 0.97528 1.48157 1.09027 1.05992 1.70350 1.21027 0.86546 0.86961 0.75451 1.90687 1.17021 1.87128 1.51172 1.20032 0.95011 0.86251 1.07374 1.21706 1.01281 0.99026 0.95265 1.24024 0.94941 0.95251 1.03377 1.47888 1.23135 1.20356 1.16865 1.22579 1.00701 0.78557 0.99890 1.22059 1.03109 0.99067 0.97907 1.78193 1.22259 1.03052 1.07192 1.75059 1.05512 1.12234 1.23507 1.21759 0.78138 1.02330 0.98312 1.22386 1.01555 0.97271 0.96896 1.20488 0.90747 0.92034 0.90595 0.93441 1.42610 1.18302 1.64309 1.11416 1.19546 0.94296 1.24958 0.96668 0.90467 1.25404 1.01854 1.03434 0.96149 1.69814 1.39694 1.49929 1.02832 0.85348 0.81044 0.78446 0.75719 1.20946 1.23227 1.20340 0.93691 0.92229 0.91739 0.94004 0.91742 0.90590 0.94172 0.86329 0.82626 0.74101 0.87670 0.83474 0.92306 0.93276 0.87095 0.93451 0.86621 0.91190 0.89913 0.79514 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 9.67 71.98 0.70 -3.36 16 2 C -0.11 -3.47 5.19 30.59 0.16 -3.31 16 3 C -0.09 -2.87 2.12 -10.86 -0.02 -2.89 16 4 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 5 C 0.13 4.52 5.01 86.22 0.43 4.96 16 6 N -0.60 -19.02 2.98 -819.72 -2.44 -21.46 16 7 C 0.51 16.23 7.69 87.66 0.67 16.90 16 8 O -0.58 -23.83 15.02 -3.02 -0.05 -23.87 16 9 C -0.05 -0.98 4.63 29.10 0.13 -0.84 16 10 C -0.03 -0.83 6.00 41.60 0.25 -0.58 16 11 C -0.02 -0.39 11.49 83.49 0.96 0.57 16 12 N -0.29 -5.38 3.44 -347.73 -1.20 -6.57 16 13 C 0.10 0.75 7.17 86.38 0.62 1.37 16 14 C -0.16 -1.25 10.04 71.98 0.72 -0.53 16 15 N -0.13 -3.80 12.92 37.02 0.48 -3.32 16 16 N -0.30 -10.24 11.83 -48.60 -0.58 -10.82 16 17 C 0.12 3.29 6.09 86.36 0.53 3.82 16 18 C -0.14 -3.99 5.78 30.67 0.18 -3.81 16 19 C 0.17 6.00 2.53 45.02 0.11 6.12 16 20 H 0.05 1.71 8.08 -2.38 -0.02 1.69 16 21 N -0.73 -33.42 3.72 -322.81 -1.20 -34.62 16 22 C -0.22 -11.49 9.93 84.03 0.83 -10.66 16 23 H 0.08 3.79 7.83 -2.91 -0.02 3.77 16 24 C -0.08 -4.24 5.50 84.86 0.47 -3.77 16 25 N -0.97 -58.55 13.06 21.65 0.28 -58.26 16 26 Si 0.96 45.17 29.55 68.60 2.03 47.19 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 H -0.31 -14.83 7.11 99.48 0.71 -14.13 16 29 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 30 H 0.04 1.33 6.70 -2.39 -0.02 1.31 16 31 H 0.06 1.52 8.14 -2.39 -0.02 1.51 16 32 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 33 H 0.04 1.66 7.70 -2.39 -0.02 1.64 16 34 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.08 2.83 5.72 -2.39 -0.01 2.82 16 36 H 0.04 1.68 6.64 -2.39 -0.02 1.66 16 37 H 0.12 2.33 7.94 -2.39 -0.02 2.31 16 38 H 0.16 1.76 7.68 -2.39 -0.02 1.74 16 39 H 0.24 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.15 -0.16 8.07 -2.39 -0.02 -0.18 16 42 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.05 0.65 8.12 -2.39 -0.02 0.63 16 44 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 45 H 0.05 1.73 7.74 -2.39 -0.02 1.71 16 46 H 0.12 2.19 5.93 -2.38 -0.01 2.18 16 47 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 48 H 0.08 1.84 8.14 -2.39 -0.02 1.83 16 49 H 0.37 19.15 5.95 -92.71 -0.55 18.60 16 50 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -82.76 396.42 4.46 -78.31 By element: Atomic # 1 Polarization: 29.08 SS G_CDS: 0.39 Total: 29.46 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.74 Total: 3.97 kcal Atomic # 7 Polarization: -130.40 SS G_CDS: -4.65 Total: -135.06 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.87 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -82.76 4.46 -78.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889400.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.766 kcal (2) G-P(sol) polarization free energy of solvation -82.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds