Wall clock time and date at job start Tue Mar 31 2020 18:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08996 * 109.50048 * 54.93001 * 3 2 1 5 5 C 1.52769 * 109.58887 * 294.97377 * 3 2 1 6 6 N 1.46921 * 109.01077 * 185.53578 * 5 3 2 7 7 C 1.34776 * 120.63328 * 233.58766 * 6 5 3 8 8 O 1.21275 * 120.00133 * 359.71846 * 7 6 5 9 9 C 1.50703 * 119.99869 * 179.72296 * 7 6 5 10 10 C 1.50700 * 109.47026 * 180.02562 * 9 7 6 11 11 C 1.35347 * 126.75515 * 124.99707 * 10 9 7 12 12 N 1.35308 * 106.17713 * 180.02562 * 11 10 9 13 13 C 1.46498 * 125.86965 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47171 * 124.99697 * 13 12 11 15 15 N 1.28720 * 108.26434 * 359.97438 * 12 11 10 16 16 N 1.28637 * 110.17708 * 0.02562 * 15 12 11 17 17 C 1.46928 * 118.73610 * 53.31251 * 6 5 3 18 18 C 1.53193 * 108.77848 * 306.64392 * 17 6 5 19 19 C 1.53038 * 109.49774 * 174.99879 * 3 2 1 20 20 H 1.08999 * 109.46248 * 61.32265 * 19 3 2 21 21 N 1.46497 * 109.44879 * 301.35446 * 19 3 2 22 22 C 1.36936 * 119.99938 * 154.93857 * 21 19 3 23 23 H 1.07998 * 120.00748 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99950 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00412 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00079 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46843 * 90.00145 * 26 24 22 28 28 H 1.48500 * 109.47331 * 210.00047 * 26 24 22 29 29 H 1.48499 * 109.47047 * 330.00396 * 26 24 22 30 30 H 1.09002 * 109.46880 * 60.00647 * 1 2 3 31 31 H 1.08994 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47472 * 300.00463 * 1 2 3 33 33 H 1.08994 * 109.47472 * 239.99537 * 2 1 3 34 34 H 1.09002 * 109.46880 * 119.99353 * 2 1 3 35 35 H 1.09002 * 109.50375 * 65.65814 * 5 3 2 36 36 H 1.09000 * 109.43145 * 305.37566 * 5 3 2 37 37 H 1.08995 * 109.47094 * 59.99493 * 9 7 6 38 38 H 1.09009 * 109.46880 * 299.99372 * 9 7 6 39 39 H 1.07997 * 126.91128 * 0.02562 * 11 10 9 40 40 H 1.09002 * 109.47306 * 244.99261 * 13 12 11 41 41 H 1.09000 * 109.47324 * 4.99476 * 13 12 11 42 42 H 1.09007 * 109.46862 * 179.97438 * 14 13 12 43 43 H 1.08995 * 109.47261 * 299.99778 * 14 13 12 44 44 H 1.08996 * 109.47412 * 60.00136 * 14 13 12 45 45 H 1.09003 * 109.58778 * 66.43228 * 17 6 5 46 46 H 1.08994 * 109.59049 * 186.85699 * 17 6 5 47 47 H 1.08994 * 109.49969 * 174.58898 * 18 17 6 48 48 H 1.09007 * 109.49721 * 294.65370 * 18 17 6 49 49 H 0.96999 * 120.00125 * 334.94399 * 21 19 3 50 50 H 0.96998 * 120.00280 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6378 2.1279 -1.3047 6 7 2.2450 3.4650 -1.3498 7 6 1.4855 4.5573 -1.5659 8 8 0.2895 4.4414 -1.7304 9 6 2.1224 5.9226 -1.6031 10 6 1.0634 6.9641 -1.8576 11 6 0.7995 8.0531 -1.0985 12 7 -0.2249 8.6962 -1.7051 13 6 -0.8554 9.9348 -1.2419 14 6 -0.8187 10.9758 -2.3626 15 7 -0.5503 8.0326 -2.7590 16 7 0.1991 6.9939 -2.8783 17 6 3.6951 3.5895 -1.1488 18 6 4.0736 2.8882 0.1596 19 6 3.5652 1.4451 0.1258 20 1 4.0009 0.9265 -0.7283 21 7 3.9538 0.7617 1.3619 22 6 5.1914 0.1848 1.4653 23 1 5.8812 0.2339 0.6357 24 6 5.5595 -0.4632 2.6364 25 7 6.7492 -1.0173 2.7360 26 14 4.3668 -0.5476 4.0717 27 1 3.5326 -1.7702 3.9507 28 1 5.1281 -0.5918 5.3459 29 1 3.4917 0.6520 4.0592 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.5524 2.2179 -1.3490 36 1 1.9923 1.5369 -2.1491 37 1 2.8644 5.9557 -2.4008 38 1 2.6069 6.1236 -0.6475 39 1 1.3049 8.3493 -0.1912 40 1 -1.8908 9.7344 -0.9661 41 1 -0.3155 10.3152 -0.3748 42 1 -1.2883 11.8972 -2.0181 43 1 0.2165 11.1763 -2.6385 44 1 -1.3586 10.5955 -3.2297 45 1 4.2209 3.1201 -1.9803 46 1 3.9669 4.6434 -1.0903 47 1 5.1576 2.8896 0.2727 48 1 3.6195 3.4148 0.9991 49 1 3.3345 0.7178 2.1072 50 1 7.0063 -1.4704 3.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037889402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:35 Heat of formation + Delta-G solvation = 70.273858 kcal Electronic energy + Delta-G solvation = -29404.664853 eV Core-core repulsion = 25469.384267 eV Total energy + Delta-G solvation = -3935.280585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.41257 -40.11612 -37.89542 -35.80828 -34.79066 -33.93584 -32.80154 -31.76515 -31.14262 -29.87776 -29.44700 -27.94058 -25.04391 -24.96129 -23.93666 -22.56104 -22.08157 -21.34586 -20.81147 -19.93688 -18.95324 -17.61597 -17.51037 -17.12487 -16.51614 -15.86132 -15.52089 -14.99935 -14.89587 -14.80468 -14.34626 -14.20230 -13.79173 -13.60397 -13.43796 -13.27611 -13.14354 -13.05252 -12.78460 -12.62820 -12.45206 -12.17887 -12.13545 -11.93012 -11.77787 -11.62931 -11.38536 -11.02925 -10.99622 -10.88333 -10.76843 -10.44200 -10.29869 -10.20911 -10.19828 -9.76775 -9.70099 -9.59008 -9.26919 -8.93431 -8.45089 -7.28618 -5.79608 -3.14791 1.41060 2.08144 2.39333 2.76458 3.16015 3.35148 3.38492 3.43617 3.94129 4.16495 4.30020 4.53301 4.56572 4.56792 4.57761 4.84310 4.99055 4.99877 5.07233 5.07880 5.14163 5.19796 5.25178 5.31597 5.38510 5.49517 5.51378 5.53983 5.62737 5.63990 5.69047 5.82168 5.93014 5.96165 6.05071 6.06561 6.13011 6.26929 6.31735 6.35834 6.37680 6.49416 6.58834 6.71977 6.82672 6.96051 7.54175 7.96419 8.31825 8.39625 8.41253 9.18058 9.90934 10.11020 11.38651 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.002431 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.993574 B =11514.775639 C =12005.412188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.108 4.108 4 H 0.067 0.933 5 C 0.122 3.878 6 N -0.610 5.610 7 C 0.517 3.483 8 O -0.530 6.530 9 C -0.054 4.054 10 C -0.004 4.004 11 C -0.047 4.047 12 N -0.295 5.295 13 C 0.112 3.888 14 C -0.167 4.167 15 N -0.087 5.087 16 N -0.239 5.239 17 C 0.106 3.894 18 C -0.152 4.152 19 C 0.188 3.812 20 H 0.057 0.943 21 N -0.745 5.745 22 C -0.241 4.241 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.881 3.119 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.278 1.278 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.066 0.934 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.190 0.810 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.081 0.919 48 H 0.058 0.942 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 21.934 -7.619 26.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.128 4.128 4 H 0.086 0.914 5 C -0.001 4.001 6 N -0.343 5.343 7 C 0.304 3.696 8 O -0.406 6.406 9 C -0.095 4.095 10 C -0.142 4.142 11 C -0.198 4.198 12 N -0.089 5.089 13 C -0.009 4.009 14 C -0.225 4.225 15 N -0.067 5.067 16 N -0.106 5.106 17 C -0.017 4.017 18 C -0.193 4.193 19 C 0.078 3.922 20 H 0.075 0.925 21 N -0.387 5.387 22 C -0.370 4.370 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.219 1.219 29 H -0.204 1.204 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.207 0.793 40 H 0.117 0.883 41 H 0.123 0.877 42 H 0.101 0.899 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.088 0.912 46 H 0.096 0.904 47 H 0.099 0.901 48 H 0.077 0.923 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -13.459 21.736 -8.958 27.090 hybrid contribution 0.104 0.087 2.371 2.375 sum -13.355 21.823 -6.587 26.419 Atomic orbital electron populations 1.21855 0.96659 1.01152 1.01473 1.21456 0.94526 0.95732 1.03367 1.21752 0.97563 0.96254 0.97275 0.91408 1.21590 0.99497 0.81594 0.97409 1.48142 1.08447 1.06653 1.71081 1.20253 0.87036 0.85599 0.76695 1.90720 1.14764 1.86282 1.48850 1.19931 0.95400 0.89445 1.04770 1.21255 1.00706 0.97227 0.95046 1.23304 0.96141 0.97200 1.03145 1.47414 1.23526 1.19940 1.18011 1.22077 0.99763 0.80358 0.98669 1.22079 1.03614 0.98069 0.98751 1.78287 1.21300 1.02262 1.04837 1.75118 1.03727 1.10630 1.21076 1.21882 0.79508 1.01177 0.99162 1.22646 1.02576 0.98803 0.95276 1.20164 0.90732 0.90684 0.90598 0.92463 1.42786 1.16601 1.66286 1.13018 1.19049 0.90654 1.26920 1.00418 0.89178 1.24658 0.96425 1.00336 0.97672 1.69695 1.19320 1.41554 1.27566 0.86602 0.80967 0.77827 0.83420 1.21086 1.21862 1.20389 0.92866 0.93062 0.93156 0.91889 0.90569 0.89161 0.91582 0.87162 0.87145 0.79337 0.88341 0.87701 0.89922 0.91715 0.90614 0.91160 0.90353 0.90077 0.92323 0.80647 0.93095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 9.67 37.16 0.36 -1.69 16 2 C -0.11 -1.72 5.31 -26.73 -0.14 -1.86 16 3 C -0.11 -1.67 1.91 -90.72 -0.17 -1.84 16 4 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 5 C 0.12 1.73 5.30 -3.93 -0.02 1.71 16 6 N -0.61 -8.13 2.98 -173.03 -0.52 -8.65 16 7 C 0.52 7.35 7.69 -10.98 -0.08 7.26 16 8 O -0.53 -9.71 15.01 5.56 0.08 -9.62 16 9 C -0.05 -0.55 4.63 -29.03 -0.13 -0.69 16 10 C 0.00 -0.04 6.00 -82.78 -0.50 -0.54 16 11 C -0.05 -0.43 11.49 -17.05 -0.20 -0.63 16 12 N -0.30 -2.83 3.44 -61.26 -0.21 -3.04 16 13 C 0.11 0.53 7.18 -4.04 -0.03 0.50 16 14 C -0.17 -0.69 10.04 37.16 0.37 -0.32 16 15 N -0.09 -1.19 12.91 60.35 0.78 -0.41 16 16 N -0.24 -3.69 11.82 33.29 0.39 -3.30 16 17 C 0.11 1.23 6.34 -3.71 -0.02 1.21 16 18 C -0.15 -2.29 5.66 -26.61 -0.15 -2.44 16 19 C 0.19 3.30 2.20 -67.89 -0.15 3.15 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 N -0.75 -16.42 4.13 -53.39 -0.22 -16.64 16 22 C -0.24 -6.40 10.41 -15.06 -0.16 -6.56 16 23 H 0.09 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 25 N -0.93 -28.54 13.97 55.49 0.78 -27.76 16 26 Si 0.88 21.61 27.74 -169.99 -4.71 16.90 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.44 6.52 56.52 0.37 -6.07 16 30 H 0.05 0.67 6.70 -51.93 -0.35 0.32 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.08 1.34 7.21 -51.93 -0.37 0.96 16 35 H 0.09 1.38 5.72 -51.93 -0.30 1.08 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.11 0.93 7.94 -51.93 -0.41 0.52 16 38 H 0.11 0.81 7.67 -51.92 -0.40 0.41 16 39 H 0.19 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.10 0.19 8.07 -51.93 -0.42 -0.23 16 42 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.68 5.93 -51.93 -0.31 0.37 16 47 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.06 0.91 8.14 -51.92 -0.42 0.48 16 49 H 0.36 8.03 5.37 -40.82 -0.22 7.81 16 50 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 396.88 15.07 5.98 5.98 Total: -1.00 -36.51 396.88 -7.05 -43.56 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -8.28 Total: 5.68 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.12 Total: -2.69 kcal Atomic # 7 Polarization: -60.80 SS G_CDS: 1.00 Total: -59.80 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.08 Total: -9.62 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.71 Total: 16.90 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.51 -7.05 -43.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.838 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds