Wall clock time and date at job start Tue Mar 31 2020 18:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47006 * 2 1 4 4 H 1.08996 * 109.50048 * 54.93001 * 3 2 1 5 5 C 1.52769 * 109.58887 * 294.97377 * 3 2 1 6 6 N 1.46921 * 109.01077 * 185.53578 * 5 3 2 7 7 C 1.34776 * 120.63328 * 233.58766 * 6 5 3 8 8 O 1.21275 * 120.00133 * 359.71846 * 7 6 5 9 9 C 1.50703 * 119.99869 * 179.72296 * 7 6 5 10 10 C 1.50700 * 109.47026 * 180.02562 * 9 7 6 11 11 C 1.35347 * 126.75515 * 124.99707 * 10 9 7 12 12 N 1.35308 * 106.17713 * 180.02562 * 11 10 9 13 13 C 1.46498 * 125.86965 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.47171 * 124.99697 * 13 12 11 15 15 N 1.28720 * 108.26434 * 359.97438 * 12 11 10 16 16 N 1.28637 * 110.17708 * 0.02562 * 15 12 11 17 17 C 1.46928 * 118.73610 * 53.31251 * 6 5 3 18 18 C 1.53193 * 108.77848 * 306.64392 * 17 6 5 19 19 C 1.53038 * 109.49774 * 174.99879 * 3 2 1 20 20 H 1.08999 * 109.46248 * 61.32265 * 19 3 2 21 21 N 1.46497 * 109.44879 * 301.35446 * 19 3 2 22 22 C 1.36936 * 119.99938 * 154.93857 * 21 19 3 23 23 H 1.07998 * 120.00748 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99950 * 180.02562 * 22 21 19 25 25 N 1.31621 * 120.00412 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00079 * 359.97438 * 24 22 21 27 27 H 1.48505 * 109.46843 * 90.00145 * 26 24 22 28 28 H 1.48500 * 109.47331 * 210.00047 * 26 24 22 29 29 H 1.48499 * 109.47047 * 330.00396 * 26 24 22 30 30 H 1.09002 * 109.46880 * 60.00647 * 1 2 3 31 31 H 1.08994 * 109.46931 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47472 * 300.00463 * 1 2 3 33 33 H 1.08994 * 109.47472 * 239.99537 * 2 1 3 34 34 H 1.09002 * 109.46880 * 119.99353 * 2 1 3 35 35 H 1.09002 * 109.50375 * 65.65814 * 5 3 2 36 36 H 1.09000 * 109.43145 * 305.37566 * 5 3 2 37 37 H 1.08995 * 109.47094 * 59.99493 * 9 7 6 38 38 H 1.09009 * 109.46880 * 299.99372 * 9 7 6 39 39 H 1.07997 * 126.91128 * 0.02562 * 11 10 9 40 40 H 1.09002 * 109.47306 * 244.99261 * 13 12 11 41 41 H 1.09000 * 109.47324 * 4.99476 * 13 12 11 42 42 H 1.09007 * 109.46862 * 179.97438 * 14 13 12 43 43 H 1.08995 * 109.47261 * 299.99778 * 14 13 12 44 44 H 1.08996 * 109.47412 * 60.00136 * 14 13 12 45 45 H 1.09003 * 109.58778 * 66.43228 * 17 6 5 46 46 H 1.08994 * 109.59049 * 186.85699 * 17 6 5 47 47 H 1.08994 * 109.49969 * 174.58898 * 18 17 6 48 48 H 1.09007 * 109.49721 * 294.65370 * 18 17 6 49 49 H 0.96999 * 120.00125 * 334.94399 * 21 19 3 50 50 H 0.96998 * 120.00280 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6378 2.1279 -1.3047 6 7 2.2450 3.4650 -1.3498 7 6 1.4855 4.5573 -1.5659 8 8 0.2895 4.4414 -1.7304 9 6 2.1224 5.9226 -1.6031 10 6 1.0634 6.9641 -1.8576 11 6 0.7995 8.0531 -1.0985 12 7 -0.2249 8.6962 -1.7051 13 6 -0.8554 9.9348 -1.2419 14 6 -0.8187 10.9758 -2.3626 15 7 -0.5503 8.0326 -2.7590 16 7 0.1991 6.9939 -2.8783 17 6 3.6951 3.5895 -1.1488 18 6 4.0736 2.8882 0.1596 19 6 3.5652 1.4451 0.1258 20 1 4.0009 0.9265 -0.7283 21 7 3.9538 0.7617 1.3619 22 6 5.1914 0.1848 1.4653 23 1 5.8812 0.2339 0.6357 24 6 5.5595 -0.4632 2.6364 25 7 6.7492 -1.0173 2.7360 26 14 4.3668 -0.5476 4.0717 27 1 3.5326 -1.7702 3.9507 28 1 5.1281 -0.5918 5.3459 29 1 3.4917 0.6520 4.0592 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 0.5524 2.2179 -1.3490 36 1 1.9923 1.5369 -2.1491 37 1 2.8644 5.9557 -2.4008 38 1 2.6069 6.1236 -0.6475 39 1 1.3049 8.3493 -0.1912 40 1 -1.8908 9.7344 -0.9661 41 1 -0.3155 10.3152 -0.3748 42 1 -1.2883 11.8972 -2.0181 43 1 0.2165 11.1763 -2.6385 44 1 -1.3586 10.5955 -3.2297 45 1 4.2209 3.1201 -1.9803 46 1 3.9669 4.6434 -1.0903 47 1 5.1576 2.8896 0.2727 48 1 3.6195 3.4148 0.9991 49 1 3.3345 0.7178 2.1072 50 1 7.0063 -1.4704 3.5543 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037889402.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:34 Heat of formation + Delta-G solvation = 44.959195 kcal Electronic energy + Delta-G solvation = -29405.762579 eV Core-core repulsion = 25469.384267 eV Total energy + Delta-G solvation = -3936.378311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.17018 -41.24919 -39.17047 -36.43000 -36.18918 -35.37573 -33.61021 -33.56834 -31.70511 -31.43672 -30.49224 -28.94005 -26.46479 -25.53446 -25.12563 -24.11532 -22.86522 -22.22116 -22.05884 -21.24583 -20.09116 -19.36400 -18.22208 -18.13901 -17.27616 -16.94256 -16.64886 -16.44095 -16.01200 -15.69057 -15.33849 -15.23628 -15.14630 -14.69934 -14.61923 -14.48937 -14.33847 -14.11574 -13.90573 -13.58969 -13.32879 -13.21972 -13.06178 -12.95744 -12.89371 -12.67482 -12.57367 -12.53661 -12.30124 -12.08961 -12.03236 -11.81901 -11.64214 -11.60217 -11.55253 -11.07977 -10.96006 -10.92885 -10.74984 -10.07911 -9.59074 -9.22563 -7.96991 -5.28288 0.71400 1.39568 1.41354 1.48268 1.48434 1.60371 1.72924 2.15443 2.51534 3.33103 3.35506 3.54336 3.61885 3.73071 3.86644 3.93176 3.98922 4.02088 4.06920 4.21631 4.29356 4.31132 4.35977 4.45080 4.46348 4.48540 4.57234 4.62904 4.73537 4.75332 4.76066 4.83225 4.88042 4.91758 5.01909 5.02930 5.07976 5.14055 5.18804 5.25000 5.29738 5.37716 5.46824 5.55861 5.69840 5.77603 5.84118 6.27273 6.50533 7.13469 7.27184 7.60753 7.90806 8.09009 9.24507 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018308 B = 0.002431 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.993574 B =11514.775639 C =12005.412188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.094 4.094 4 H 0.062 0.938 5 C 0.126 3.874 6 N -0.609 5.609 7 C 0.513 3.487 8 O -0.577 6.577 9 C -0.048 4.048 10 C -0.032 4.032 11 C -0.029 4.029 12 N -0.289 5.289 13 C 0.101 3.899 14 C -0.163 4.163 15 N -0.127 5.127 16 N -0.292 5.292 17 C 0.112 3.888 18 C -0.143 4.143 19 C 0.180 3.820 20 H 0.046 0.954 21 N -0.747 5.747 22 C -0.214 4.214 23 H 0.062 0.938 24 C -0.064 4.064 25 N -0.984 5.984 26 Si 0.946 3.054 27 H -0.284 1.284 28 H -0.300 1.300 29 H -0.255 1.255 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.049 0.951 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.130 0.870 38 H 0.149 0.851 39 H 0.238 0.762 40 H 0.104 0.896 41 H 0.145 0.855 42 H 0.109 0.891 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.079 0.921 46 H 0.120 0.880 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.362 0.638 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.872 24.728 -6.668 28.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C -0.115 4.115 4 H 0.080 0.920 5 C 0.003 3.997 6 N -0.341 5.341 7 C 0.303 3.697 8 O -0.457 6.457 9 C -0.089 4.089 10 C -0.172 4.172 11 C -0.181 4.181 12 N -0.083 5.083 13 C -0.018 4.018 14 C -0.221 4.221 15 N -0.106 5.106 16 N -0.158 5.158 17 C -0.010 4.010 18 C -0.184 4.184 19 C 0.072 3.928 20 H 0.064 0.936 21 N -0.389 5.389 22 C -0.345 4.345 23 H 0.080 0.920 24 C -0.255 4.255 25 N -0.636 5.636 26 Si 0.774 3.226 27 H -0.210 1.210 28 H -0.227 1.227 29 H -0.179 1.179 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.148 0.852 38 H 0.167 0.833 39 H 0.254 0.746 40 H 0.123 0.877 41 H 0.162 0.838 42 H 0.128 0.872 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.098 0.902 46 H 0.138 0.862 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.195 0.805 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -14.291 24.589 -8.060 29.560 hybrid contribution 0.338 -0.720 1.999 2.151 sum -13.954 23.869 -6.060 28.305 Atomic orbital electron populations 1.21789 0.94957 1.01948 1.01764 1.21425 0.96032 0.95407 1.02203 1.21591 0.95589 0.96449 0.97822 0.91969 1.21443 0.99090 0.82428 0.96721 1.48215 1.09085 1.06169 1.70671 1.20987 0.86517 0.86914 0.75331 1.90705 1.17000 1.87030 1.50923 1.20064 0.95098 0.86239 1.07462 1.21733 1.01277 0.98933 0.95268 1.24024 0.94984 0.95661 1.03416 1.47859 1.23157 1.20410 1.16840 1.22566 1.00627 0.78698 0.99899 1.22053 1.03156 0.98974 0.97878 1.78191 1.22367 1.02990 1.07059 1.75038 1.05381 1.11993 1.23392 1.21964 0.78365 1.03410 0.97273 1.22449 1.01511 0.96944 0.97497 1.20418 0.92322 0.91834 0.88191 0.93583 1.42793 1.14956 1.66584 1.14600 1.19000 0.91453 1.25070 0.98955 0.91977 1.25375 0.98164 1.01273 1.00729 1.69864 1.21689 1.43771 1.28228 0.85543 0.78917 0.78551 0.79540 1.21041 1.22726 1.17942 0.92241 0.92059 0.93161 0.91815 0.92920 0.90097 0.90918 0.85183 0.83331 0.74618 0.87738 0.83760 0.87225 0.92224 0.93094 0.90247 0.86210 0.91414 0.92208 0.80537 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.67 71.98 0.70 -3.03 16 2 C -0.11 -3.35 5.31 30.59 0.16 -3.18 16 3 C -0.09 -2.79 1.91 -10.86 -0.02 -2.81 16 4 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 5 C 0.13 3.42 5.30 86.22 0.46 3.88 16 6 N -0.61 -14.80 2.98 -819.73 -2.44 -17.24 16 7 C 0.51 13.49 7.69 87.66 0.67 14.17 16 8 O -0.58 -20.84 15.01 -3.01 -0.05 -20.88 16 9 C -0.05 -0.81 4.63 29.10 0.13 -0.68 16 10 C -0.03 -0.72 6.00 41.60 0.25 -0.47 16 11 C -0.03 -0.43 11.49 83.49 0.96 0.53 16 12 N -0.29 -4.94 3.44 -347.74 -1.20 -6.14 16 13 C 0.10 0.66 7.18 86.38 0.62 1.28 16 14 C -0.16 -1.05 10.04 71.98 0.72 -0.33 16 15 N -0.13 -3.45 12.91 37.02 0.48 -2.97 16 16 N -0.29 -9.00 11.82 -48.60 -0.57 -9.57 16 17 C 0.11 2.23 6.34 86.36 0.55 2.78 16 18 C -0.14 -4.00 5.66 30.67 0.17 -3.83 16 19 C 0.18 6.15 2.20 45.02 0.10 6.25 16 20 H 0.05 1.68 8.08 -2.39 -0.02 1.66 16 21 N -0.75 -32.45 4.13 -322.82 -1.33 -33.79 16 22 C -0.21 -11.48 10.41 84.03 0.87 -10.60 16 23 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 24 C -0.06 -3.67 5.50 84.86 0.47 -3.21 16 25 N -0.98 -61.71 13.97 21.65 0.30 -61.40 16 26 Si 0.95 44.82 27.74 68.60 1.90 46.73 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 28 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 29 H -0.25 -10.93 6.52 99.48 0.65 -10.28 16 30 H 0.06 1.43 6.70 -2.39 -0.02 1.42 16 31 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.05 1.82 7.21 -2.39 -0.02 1.80 16 35 H 0.08 2.40 5.72 -2.39 -0.01 2.39 16 36 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.13 1.69 7.94 -2.39 -0.02 1.67 16 38 H 0.15 1.34 7.67 -2.38 -0.02 1.32 16 39 H 0.24 0.87 8.06 -2.91 -0.02 0.85 16 40 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.14 -0.18 8.07 -2.39 -0.02 -0.20 16 42 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 43 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.05 0.59 8.12 -2.39 -0.02 0.57 16 45 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.12 1.46 5.93 -2.39 -0.01 1.45 16 47 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 49 H 0.36 15.61 5.37 -92.71 -0.50 15.11 16 50 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -84.74 396.88 4.29 -80.45 By element: Atomic # 1 Polarization: 23.70 SS G_CDS: 0.38 Total: 24.08 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 6.82 Total: 0.74 kcal Atomic # 7 Polarization: -126.35 SS G_CDS: -4.77 Total: -131.11 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 1.90 Total: 46.73 kcal Total: -84.74 4.29 -80.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037889402.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.413 kcal (2) G-P(sol) polarization free energy of solvation -84.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds