Wall clock time and date at job start Tue Mar 31 2020 18:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.09000 * 109.49776 * 304.94004 * 3 2 1 5 5 C 1.53195 * 109.49522 * 64.99939 * 3 2 1 6 6 N 1.46927 * 108.77704 * 174.58536 * 5 3 2 7 7 C 1.34773 * 120.63074 * 126.36975 * 6 5 3 8 8 O 1.21602 * 120.00043 * 4.06790 * 7 6 5 9 9 C 1.47521 * 119.99813 * 184.07146 * 7 6 5 10 10 C 1.36600 * 125.76986 * 173.28284 * 9 7 6 11 11 N 1.34805 * 106.84107 * 180.02562 * 10 9 7 12 12 C 1.46503 * 126.59881 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47315 * 275.00355 * 12 11 10 14 14 C 1.53000 * 109.46693 * 35.00004 * 12 11 10 15 15 N 1.40211 * 106.81025 * 359.97438 * 11 10 9 16 16 N 1.28756 * 108.36541 * 359.97438 * 15 11 10 17 17 C 1.46928 * 118.73798 * 306.64514 * 6 5 3 18 18 C 1.52770 * 109.00812 * 53.30713 * 17 6 5 19 19 C 1.53032 * 109.49688 * 184.83761 * 3 2 1 20 20 H 1.09001 * 109.46272 * 298.70288 * 19 3 2 21 21 N 1.46490 * 109.46253 * 58.66612 * 19 3 2 22 22 C 1.36942 * 120.00433 * 205.00023 * 21 19 3 23 23 H 1.07999 * 119.99361 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00031 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00425 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99568 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47499 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46902 * 120.00311 * 26 24 22 29 29 H 1.48506 * 109.47109 * 239.99829 * 26 24 22 30 30 H 1.09002 * 109.46896 * 299.99858 * 1 2 3 31 31 H 1.09003 * 109.46866 * 59.99770 * 1 2 3 32 32 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46896 * 240.00142 * 2 1 3 34 34 H 1.09003 * 109.46866 * 120.00230 * 2 1 3 35 35 H 1.09001 * 109.58467 * 54.79939 * 5 3 2 36 36 H 1.08998 * 109.70725 * 294.44938 * 5 3 2 37 37 H 1.08006 * 126.57739 * 359.75080 * 10 9 7 38 38 H 1.08996 * 109.47404 * 155.00213 * 12 11 10 39 39 H 1.09009 * 109.47250 * 59.99542 * 13 12 11 40 40 H 1.09001 * 109.47439 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.47059 * 299.99901 * 13 12 11 42 42 H 1.09005 * 109.47550 * 300.00362 * 14 12 11 43 43 H 1.09003 * 109.47433 * 59.99967 * 14 12 11 44 44 H 1.09001 * 109.47337 * 179.97438 * 14 12 11 45 45 H 1.08997 * 109.58521 * 173.14298 * 17 6 5 46 46 H 1.09001 * 109.58657 * 293.57216 * 17 6 5 47 47 H 1.08994 * 109.55995 * 185.55064 * 18 17 6 48 48 H 1.09001 * 109.35763 * 65.49665 * 18 17 6 49 49 H 0.97003 * 119.99911 * 24.99750 * 21 19 3 50 50 H 0.96999 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3495 7 6 1.4815 4.5579 1.5630 8 8 0.2945 4.4364 1.7977 9 6 2.0896 5.9010 1.5119 10 6 1.4142 7.0864 1.5808 11 7 2.3361 8.0665 1.4980 12 6 2.0824 9.5091 1.5287 13 6 1.7352 9.9960 0.1204 14 6 0.9138 9.8013 2.4719 15 7 3.5846 7.4398 1.3780 16 7 3.4016 6.1653 1.3906 17 6 3.6914 3.5904 1.1468 18 6 4.0741 2.8880 -0.1547 19 6 3.5655 1.4449 -0.1217 20 1 3.9989 0.9267 0.7338 21 7 3.9578 0.7608 -1.3562 22 6 5.1962 0.1849 -1.4562 23 1 5.8838 0.2355 -0.6250 24 6 5.5676 -0.4637 -2.6259 25 7 4.7293 -0.5257 -3.6388 26 14 7.2572 -1.2486 -2.7624 27 1 8.0037 -1.0403 -1.4958 28 1 7.1078 -2.7042 -3.0159 29 1 8.0036 -0.6248 -3.8846 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9908 1.5396 2.1547 36 1 0.5498 2.2171 1.3565 37 1 0.3461 7.2139 1.6780 38 1 2.9736 10.0272 1.8828 39 1 0.8440 9.4777 -0.2339 40 1 1.5461 11.0692 0.1433 41 1 2.5678 9.7877 -0.5516 42 1 0.0226 9.2831 2.1177 43 1 1.1610 9.4545 3.4752 44 1 0.7252 10.8747 2.4951 45 1 3.9623 4.6443 1.0850 46 1 4.2182 3.1237 1.9792 47 1 5.1585 2.8892 -0.2648 48 1 3.6219 3.4139 -0.9956 49 1 3.3402 0.7158 -2.1029 50 1 4.9888 -0.9793 -4.4560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037966468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:01 Heat of formation + Delta-G solvation = 76.039314 kcal Electronic energy + Delta-G solvation = -29852.109095 eV Core-core repulsion = 25917.078519 eV Total energy + Delta-G solvation = -3935.030576 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.47807 -39.80836 -37.66530 -36.88727 -34.63790 -33.70540 -31.84977 -31.61722 -31.08485 -29.36968 -28.56233 -27.99740 -25.49596 -24.46388 -23.59371 -23.41898 -22.19659 -21.13016 -20.70559 -20.08986 -19.20468 -17.55971 -17.01277 -16.52217 -16.26999 -15.89916 -15.31769 -14.93754 -14.88272 -14.73162 -14.17422 -13.85081 -13.73601 -13.61636 -13.31388 -13.23527 -13.13350 -12.99046 -12.88234 -12.55176 -12.41518 -12.17132 -12.15943 -12.02265 -11.71343 -11.54923 -11.20385 -10.96078 -10.85713 -10.66291 -10.62694 -10.37851 -10.24301 -10.12074 -10.05534 -9.81245 -9.54358 -9.49664 -9.43587 -8.78779 -8.33730 -6.87524 -5.71319 -2.99044 0.96490 1.62036 1.73565 3.10428 3.34131 3.46590 3.52690 3.54509 3.82405 4.03329 4.15685 4.34897 4.46854 4.63783 4.71211 4.82387 4.88299 4.96796 5.02377 5.12905 5.21427 5.29627 5.38715 5.43998 5.48044 5.50356 5.59056 5.68487 5.71318 5.75058 5.80742 5.95148 6.04368 6.14785 6.20029 6.23771 6.36449 6.46908 6.49817 6.57737 6.59008 6.72669 6.83811 6.95995 7.06140 7.19860 7.56474 7.76271 7.83571 8.26169 8.47312 9.58676 10.17159 10.52192 11.51433 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002874 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.308519 B = 9738.585103 C =11058.349932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C -0.103 4.103 4 H 0.069 0.931 5 C 0.119 3.881 6 N -0.586 5.586 7 C 0.600 3.400 8 O -0.552 6.552 9 C -0.090 4.090 10 C 0.091 3.909 11 N -0.354 5.354 12 C 0.143 3.857 13 C -0.167 4.167 14 C -0.169 4.169 15 N -0.067 5.067 16 N -0.200 5.200 17 C 0.068 3.932 18 C -0.146 4.146 19 C 0.182 3.818 20 H 0.047 0.953 21 N -0.721 5.721 22 C -0.232 4.232 23 H 0.070 0.930 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.201 0.799 38 H 0.114 0.886 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.136 0.864 46 H 0.061 0.939 47 H 0.074 0.926 48 H 0.055 0.945 49 H 0.383 0.617 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.228 21.042 12.777 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.150 4.150 3 C -0.123 4.123 4 H 0.087 0.913 5 C -0.004 4.004 6 N -0.316 5.316 7 C 0.386 3.614 8 O -0.430 6.430 9 C -0.229 4.229 10 C -0.065 4.065 11 N -0.141 5.141 12 C 0.042 3.958 13 C -0.226 4.226 14 C -0.227 4.227 15 N -0.046 5.046 16 N -0.073 5.073 17 C -0.056 4.056 18 C -0.187 4.187 19 C 0.072 3.928 20 H 0.065 0.935 21 N -0.361 5.361 22 C -0.364 4.364 23 H 0.088 0.912 24 C -0.211 4.211 25 N -0.582 5.582 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.220 1.220 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.109 0.891 37 H 0.218 0.782 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.153 0.847 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.074 0.926 49 H 0.217 0.783 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.150 21.160 12.787 26.362 hybrid contribution -0.134 -0.505 -0.455 0.693 sum -9.284 20.655 12.332 25.786 Atomic orbital electron populations 1.21847 0.96869 1.00982 1.01279 1.21453 0.94310 0.95737 1.03472 1.21771 0.97816 0.96151 0.96608 0.91267 1.21809 0.99285 0.81282 0.97978 1.47971 1.09254 1.06014 1.68342 1.16808 0.85331 0.82126 0.77141 1.90766 1.14843 1.86130 1.51279 1.21498 0.89670 0.95452 1.16303 1.23204 0.97986 0.87137 0.98218 1.50737 1.06416 1.07984 1.48934 1.21647 1.01311 0.74515 0.98328 1.22269 1.03261 1.02546 0.94486 1.22270 0.97067 1.03991 0.99379 1.82038 1.01028 0.99803 1.21719 1.74218 1.15448 1.06533 1.11060 1.22861 0.78125 1.06241 0.98360 1.22525 1.02026 0.98619 0.95563 1.20232 0.90653 0.90883 0.91066 0.93491 1.42422 1.16434 1.64497 1.12767 1.19276 0.91776 1.26753 0.98551 0.91193 1.24712 0.98097 1.01765 0.96487 1.69671 1.35168 1.48621 1.04747 0.86164 0.84177 0.78829 0.77325 1.20593 1.22012 1.22030 0.93188 0.93031 0.93217 0.89797 0.92444 0.91506 0.89146 0.78199 0.86772 0.91395 0.89687 0.91071 0.91003 0.91083 0.89290 0.84741 0.92036 0.90702 0.92627 0.78291 0.93687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 37.16 0.36 -1.80 16 2 C -0.11 -1.87 5.31 -26.73 -0.14 -2.01 16 3 C -0.10 -1.78 1.93 -90.50 -0.17 -1.96 16 4 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.12 1.84 5.31 -3.71 -0.02 1.82 16 6 N -0.59 -9.30 2.98 -174.25 -0.52 -9.82 16 7 C 0.60 9.46 7.69 -12.48 -0.10 9.37 16 8 O -0.55 -9.50 16.30 5.28 0.09 -9.42 16 9 C -0.09 -1.24 6.77 -83.55 -0.57 -1.80 16 10 C 0.09 0.92 10.41 -16.84 -0.18 0.75 16 11 N -0.35 -3.29 3.54 -54.56 -0.19 -3.48 16 12 C 0.14 0.73 3.96 -67.93 -0.27 0.46 16 13 C -0.17 -0.72 9.52 37.16 0.35 -0.37 16 14 C -0.17 -0.50 8.85 37.16 0.33 -0.17 16 15 N -0.07 -0.86 13.78 60.35 0.83 -0.03 16 16 N -0.20 -2.88 8.64 32.84 0.28 -2.60 16 17 C 0.07 1.08 6.28 -3.93 -0.02 1.06 16 18 C -0.15 -2.73 5.64 -26.83 -0.15 -2.88 16 19 C 0.18 3.63 2.19 -67.90 -0.15 3.48 16 20 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 21 N -0.72 -17.81 4.33 -53.39 -0.23 -18.04 16 22 C -0.23 -6.38 9.93 -15.06 -0.15 -6.53 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 25 N -0.93 -28.20 13.06 55.49 0.72 -27.48 16 26 Si 0.90 22.55 29.55 -169.99 -5.02 17.53 16 27 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 1.67 7.22 -51.93 -0.37 1.29 16 34 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.09 1.40 5.75 -51.93 -0.30 1.10 16 37 H 0.20 1.43 7.35 -52.48 -0.39 1.05 16 38 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.20 7.23 -51.93 -0.38 -0.18 16 43 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 44 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 45 H 0.14 2.13 3.62 -129.60 -0.47 1.66 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 48 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.38 10.18 7.51 -40.82 -0.31 9.87 16 50 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 396.04 15.07 5.97 5.97 Total: -1.00 -33.18 396.04 -7.49 -40.67 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -8.44 Total: 7.83 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -0.97 Total: -1.12 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 0.90 Total: -61.45 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: 0.09 Total: -9.42 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.18 -7.49 -40.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.705 kcal (2) G-P(sol) polarization free energy of solvation -33.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds