Wall clock time and date at job start Tue Mar 31 2020 18:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47203 * 2 1 4 4 H 1.09000 * 109.49776 * 304.94004 * 3 2 1 5 5 C 1.53195 * 109.49522 * 64.99939 * 3 2 1 6 6 N 1.46927 * 108.77704 * 174.58536 * 5 3 2 7 7 C 1.34773 * 120.63074 * 126.36975 * 6 5 3 8 8 O 1.21602 * 120.00043 * 4.06790 * 7 6 5 9 9 C 1.47521 * 119.99813 * 184.07146 * 7 6 5 10 10 C 1.36600 * 125.76986 * 173.28284 * 9 7 6 11 11 N 1.34805 * 106.84107 * 180.02562 * 10 9 7 12 12 C 1.46503 * 126.59881 * 180.02562 * 11 10 9 13 13 C 1.53000 * 109.47315 * 275.00355 * 12 11 10 14 14 C 1.53000 * 109.46693 * 35.00004 * 12 11 10 15 15 N 1.40211 * 106.81025 * 359.97438 * 11 10 9 16 16 N 1.28756 * 108.36541 * 359.97438 * 15 11 10 17 17 C 1.46928 * 118.73798 * 306.64514 * 6 5 3 18 18 C 1.52770 * 109.00812 * 53.30713 * 17 6 5 19 19 C 1.53032 * 109.49688 * 184.83761 * 3 2 1 20 20 H 1.09001 * 109.46272 * 298.70288 * 19 3 2 21 21 N 1.46490 * 109.46253 * 58.66612 * 19 3 2 22 22 C 1.36942 * 120.00433 * 205.00023 * 21 19 3 23 23 H 1.07999 * 119.99361 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00031 * 179.97438 * 22 21 19 25 25 N 1.31620 * 120.00425 * 359.97438 * 24 22 21 26 26 Si 1.86804 * 119.99568 * 179.97438 * 24 22 21 27 27 H 1.48494 * 109.47499 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.46902 * 120.00311 * 26 24 22 29 29 H 1.48506 * 109.47109 * 239.99829 * 26 24 22 30 30 H 1.09002 * 109.46896 * 299.99858 * 1 2 3 31 31 H 1.09003 * 109.46866 * 59.99770 * 1 2 3 32 32 H 1.08999 * 109.46987 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.46896 * 240.00142 * 2 1 3 34 34 H 1.09003 * 109.46866 * 120.00230 * 2 1 3 35 35 H 1.09001 * 109.58467 * 54.79939 * 5 3 2 36 36 H 1.08998 * 109.70725 * 294.44938 * 5 3 2 37 37 H 1.08006 * 126.57739 * 359.75080 * 10 9 7 38 38 H 1.08996 * 109.47404 * 155.00213 * 12 11 10 39 39 H 1.09009 * 109.47250 * 59.99542 * 13 12 11 40 40 H 1.09001 * 109.47439 * 179.97438 * 13 12 11 41 41 H 1.09002 * 109.47059 * 299.99901 * 13 12 11 42 42 H 1.09005 * 109.47550 * 300.00362 * 14 12 11 43 43 H 1.09003 * 109.47433 * 59.99967 * 14 12 11 44 44 H 1.09001 * 109.47337 * 179.97438 * 14 12 11 45 45 H 1.08997 * 109.58521 * 173.14298 * 17 6 5 46 46 H 1.09001 * 109.58657 * 293.57216 * 17 6 5 47 47 H 1.08994 * 109.55995 * 185.55064 * 18 17 6 48 48 H 1.09001 * 109.35763 * 65.49665 * 18 17 6 49 49 H 0.97003 * 119.99911 * 24.99750 * 21 19 3 50 50 H 0.96999 * 119.99990 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6065 1.9817 -0.8423 5 6 1.6350 2.1280 1.3088 6 7 2.2415 3.4656 1.3495 7 6 1.4815 4.5579 1.5630 8 8 0.2945 4.4364 1.7977 9 6 2.0896 5.9010 1.5119 10 6 1.4142 7.0864 1.5808 11 7 2.3361 8.0665 1.4980 12 6 2.0824 9.5091 1.5287 13 6 1.7352 9.9960 0.1204 14 6 0.9138 9.8013 2.4719 15 7 3.5846 7.4398 1.3780 16 7 3.4016 6.1653 1.3906 17 6 3.6914 3.5904 1.1468 18 6 4.0741 2.8880 -0.1547 19 6 3.5655 1.4449 -0.1217 20 1 3.9989 0.9267 0.7338 21 7 3.9578 0.7608 -1.3562 22 6 5.1962 0.1849 -1.4562 23 1 5.8838 0.2355 -0.6250 24 6 5.5676 -0.4637 -2.6259 25 7 4.7293 -0.5257 -3.6388 26 14 7.2572 -1.2486 -2.7624 27 1 8.0037 -1.0403 -1.4958 28 1 7.1078 -2.7042 -3.0159 29 1 8.0036 -0.6248 -3.8846 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9908 1.5396 2.1547 36 1 0.5498 2.2171 1.3565 37 1 0.3461 7.2139 1.6780 38 1 2.9736 10.0272 1.8828 39 1 0.8440 9.4777 -0.2339 40 1 1.5461 11.0692 0.1433 41 1 2.5678 9.7877 -0.5516 42 1 0.0226 9.2831 2.1177 43 1 1.1610 9.4545 3.4752 44 1 0.7252 10.8747 2.4951 45 1 3.9623 4.6443 1.0850 46 1 4.2182 3.1237 1.9792 47 1 5.1585 2.8892 -0.2648 48 1 3.6219 3.4139 -0.9956 49 1 3.3402 0.7158 -2.1029 50 1 4.9888 -0.9793 -4.4560 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037966468.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:00 Heat of formation + Delta-G solvation = 54.867284 kcal Electronic energy + Delta-G solvation = -29853.027184 eV Core-core repulsion = 25917.078519 eV Total energy + Delta-G solvation = -3935.948664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.37866 -41.09481 -39.07687 -37.48127 -36.18050 -35.30402 -33.45525 -32.55235 -32.06336 -31.07490 -29.90312 -28.29260 -26.96544 -25.58433 -24.95154 -24.71003 -23.54284 -22.18433 -21.79669 -21.32385 -20.53605 -19.07464 -18.47335 -17.62903 -17.14798 -17.01445 -16.71256 -16.18616 -15.89823 -15.66433 -15.49277 -15.41586 -15.19363 -14.72643 -14.53319 -14.47934 -14.25379 -13.88308 -13.73764 -13.55524 -13.51704 -13.19561 -13.14413 -12.96446 -12.86472 -12.73768 -12.54748 -12.50185 -12.27578 -12.11899 -12.07477 -11.83645 -11.65973 -11.50193 -11.47044 -11.34159 -11.12453 -11.07294 -10.64253 -10.39494 -9.64211 -8.93742 -7.90337 -5.17547 0.13748 0.55765 1.05829 1.47950 1.48332 1.58196 1.92207 2.19824 2.58351 3.06090 3.30978 3.43150 3.60265 3.79486 3.80256 3.82352 3.91146 4.01065 4.03378 4.14015 4.21310 4.25325 4.35576 4.40730 4.48653 4.57992 4.62337 4.64673 4.67267 4.78024 4.81487 4.82411 4.88174 4.90050 5.02671 5.09444 5.15377 5.17328 5.21105 5.28999 5.35451 5.39893 5.49342 5.52468 5.56446 5.59435 5.72991 6.30840 6.33242 6.82321 7.08559 7.37735 8.13585 8.37778 9.33444 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.014208 B = 0.002874 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.308519 B = 9738.585103 C =11058.349932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.092 4.092 4 H 0.052 0.948 5 C 0.125 3.875 6 N -0.592 5.592 7 C 0.601 3.399 8 O -0.568 6.568 9 C -0.120 4.120 10 C 0.112 3.888 11 N -0.339 5.339 12 C 0.133 3.867 13 C -0.164 4.164 14 C -0.164 4.164 15 N -0.089 5.089 16 N -0.225 5.225 17 C 0.079 3.921 18 C -0.135 4.135 19 C 0.179 3.821 20 H 0.046 0.954 21 N -0.730 5.730 22 C -0.228 4.228 23 H 0.075 0.925 24 C -0.077 4.077 25 N -0.971 5.971 26 Si 0.967 3.033 27 H -0.266 1.266 28 H -0.295 1.295 29 H -0.297 1.297 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.065 0.935 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.233 0.767 38 H 0.123 0.877 39 H 0.066 0.934 40 H 0.113 0.887 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.114 0.886 45 H 0.143 0.857 46 H 0.072 0.928 47 H 0.060 0.940 48 H 0.037 0.963 49 H 0.371 0.629 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.185 22.992 14.744 29.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.144 4.144 3 C -0.112 4.112 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.321 5.321 7 C 0.388 3.612 8 O -0.448 6.448 9 C -0.260 4.260 10 C -0.046 4.046 11 N -0.125 5.125 12 C 0.034 3.966 13 C -0.222 4.222 14 C -0.222 4.222 15 N -0.068 5.068 16 N -0.096 5.096 17 C -0.045 4.045 18 C -0.176 4.176 19 C 0.070 3.930 20 H 0.064 0.936 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.093 0.907 24 C -0.269 4.269 25 N -0.622 5.622 26 Si 0.797 3.203 27 H -0.190 1.190 28 H -0.223 1.223 29 H -0.225 1.225 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.114 0.886 37 H 0.249 0.751 38 H 0.141 0.859 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.132 0.868 45 H 0.159 0.841 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.056 0.944 49 H 0.202 0.798 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.090 23.162 14.805 29.283 hybrid contribution 0.097 -0.943 -1.024 1.395 sum -9.993 22.220 13.781 27.991 Atomic orbital electron populations 1.21778 0.94567 1.01999 1.01868 1.21353 0.96304 0.94831 1.01958 1.21616 0.95514 0.96720 0.97307 0.92923 1.21748 0.99627 0.81313 0.97019 1.47997 1.09120 1.06349 1.68676 1.17035 0.85100 0.82691 0.76361 1.90743 1.15388 1.86530 1.52090 1.21437 0.90089 0.95540 1.18907 1.23624 0.99160 0.86069 0.95769 1.51097 1.05173 1.09422 1.46807 1.22143 1.02857 0.72008 0.99584 1.22277 1.02295 1.04331 0.93302 1.22301 0.95994 1.05744 0.98208 1.81944 1.02838 0.99412 1.22616 1.74070 1.16098 1.07483 1.11974 1.22753 0.78491 1.06442 0.96794 1.22326 1.00788 0.97737 0.96733 1.20429 0.92677 0.90932 0.88926 0.93593 1.42577 1.15505 1.64893 1.13893 1.19620 0.92568 1.25450 0.98336 0.90712 1.25476 1.01627 1.03297 0.96515 1.69828 1.37003 1.50182 1.05184 0.85151 0.80215 0.77428 0.77483 1.19033 1.22255 1.22484 0.91452 0.93519 0.92037 0.93492 0.91669 0.89976 0.88559 0.75089 0.85934 0.91484 0.86874 0.93072 0.90381 0.91651 0.86769 0.84071 0.90927 0.92163 0.94408 0.79751 0.94284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.95 9.67 71.98 0.70 -3.26 16 2 C -0.11 -3.56 5.31 30.60 0.16 -3.40 16 3 C -0.09 -3.18 1.93 -10.72 -0.02 -3.20 16 4 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 5 C 0.13 3.74 5.31 86.36 0.46 4.20 16 6 N -0.59 -18.33 2.98 -823.47 -2.45 -20.78 16 7 C 0.60 18.33 7.69 86.69 0.67 18.99 16 8 O -0.57 -18.69 16.30 -4.04 -0.07 -18.75 16 9 C -0.12 -3.17 6.77 40.82 0.28 -2.90 16 10 C 0.11 2.04 10.41 83.85 0.87 2.91 16 11 N -0.34 -5.68 3.54 -326.54 -1.16 -6.84 16 12 C 0.13 1.01 3.96 44.99 0.18 1.19 16 13 C -0.16 -1.02 9.52 71.98 0.69 -0.34 16 14 C -0.16 -0.41 8.85 71.98 0.64 0.22 16 15 N -0.09 -2.23 13.78 37.02 0.51 -1.72 16 16 N -0.22 -6.36 8.64 -50.00 -0.43 -6.79 16 17 C 0.08 2.49 6.28 86.22 0.54 3.03 16 18 C -0.13 -5.14 5.64 30.53 0.17 -4.97 16 19 C 0.18 7.25 2.19 45.02 0.10 7.35 16 20 H 0.05 1.88 8.08 -2.39 -0.02 1.86 16 21 N -0.73 -37.17 4.33 -322.84 -1.40 -38.57 16 22 C -0.23 -12.71 9.93 84.03 0.83 -11.87 16 23 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 24 C -0.08 -4.50 5.50 84.86 0.47 -4.03 16 25 N -0.97 -60.37 13.06 21.65 0.28 -60.09 16 26 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H 0.07 1.61 6.70 -2.39 -0.02 1.60 16 31 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.93 7.22 -2.39 -0.02 1.91 16 34 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.10 2.82 5.75 -2.39 -0.01 2.81 16 37 H 0.23 2.57 7.35 -2.91 -0.02 2.55 16 38 H 0.12 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.07 0.45 8.14 -2.38 -0.02 0.43 16 40 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 41 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.08 0.13 7.23 -2.38 -0.02 0.12 16 43 H 0.06 0.28 8.14 -2.39 -0.02 0.27 16 44 H 0.11 -0.23 8.14 -2.39 -0.02 -0.25 16 45 H 0.14 4.47 3.62 -102.88 -0.37 4.09 16 46 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 47 H 0.06 2.44 8.14 -2.39 -0.02 2.42 16 48 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.37 20.59 7.51 -92.71 -0.70 19.89 16 50 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -73.42 396.04 3.92 -69.50 By element: Atomic # 1 Polarization: 31.13 SS G_CDS: -0.12 Total: 31.01 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 6.73 Total: 3.95 kcal Atomic # 7 Polarization: -130.15 SS G_CDS: -4.65 Total: -134.80 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -0.07 Total: -18.75 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -73.42 3.92 -69.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037966468.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.365 kcal (2) G-P(sol) polarization free energy of solvation -73.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds