Wall clock time and date at job start Tue Mar 31 2020 19:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 N 1.46501 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59839 * 125.29429 * 4 3 2 6 6 C 1.36596 * 106.84004 * 180.13463 * 5 4 3 7 7 C 1.47516 * 125.76802 * 179.90095 * 6 5 4 8 8 O 1.21595 * 120.00360 * 353.26163 * 7 6 5 9 9 N 1.34776 * 120.00033 * 173.26887 * 7 6 5 10 10 C 1.46928 * 120.62945 * 353.64717 * 9 7 6 11 11 C 1.53191 * 108.88931 * 126.46536 * 10 9 7 12 12 C 1.53043 * 109.31298 * 54.56833 * 11 10 9 13 13 H 1.09000 * 109.45454 * 178.61479 * 12 11 10 14 14 N 1.46493 * 109.46226 * 58.65291 * 12 11 10 15 15 C 1.36938 * 120.00102 * 85.00351 * 14 12 11 16 16 H 1.07993 * 119.99759 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99997 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47284 * 59.99734 * 19 17 15 21 21 H 1.48500 * 109.47352 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47070 * 299.99432 * 19 17 15 23 23 C 1.53043 * 109.53550 * 298.62983 * 12 11 10 24 24 H 1.09005 * 109.49572 * 301.41510 * 23 12 11 25 25 C 1.52994 * 109.49446 * 181.32157 * 23 12 11 26 26 C 1.53003 * 109.46856 * 175.00112 * 25 23 12 27 27 C 1.46963 * 120.65543 * 173.47200 * 9 7 6 28 28 N 1.34396 * 108.45618 * 359.63189 * 6 5 4 29 29 N 1.28760 * 109.52960 * 0.22825 * 28 6 5 30 30 H 1.09000 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47660 * 299.99763 * 1 2 3 32 32 H 1.09003 * 109.47360 * 60.00073 * 1 2 3 33 33 H 1.08993 * 109.47233 * 240.00021 * 2 1 3 34 34 H 1.09003 * 109.47360 * 119.99927 * 2 1 3 35 35 H 1.09006 * 109.46887 * 59.99948 * 3 2 1 36 36 H 1.08997 * 109.47437 * 300.00346 * 3 2 1 37 37 H 1.07997 * 126.57628 * 359.97438 * 5 4 3 38 38 H 1.09000 * 109.58337 * 6.60716 * 10 9 7 39 39 H 1.09003 * 109.58431 * 246.32259 * 10 9 7 40 40 H 1.09005 * 109.49287 * 174.51182 * 11 10 9 41 41 H 1.08993 * 109.49849 * 294.61049 * 11 10 9 42 42 H 0.97007 * 119.99769 * 264.99629 * 14 12 11 43 43 H 0.96999 * 120.00107 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.47319 * 294.99693 * 25 23 12 45 45 H 1.09001 * 109.47468 * 55.00297 * 25 23 12 46 46 H 1.08998 * 109.47430 * 299.99733 * 26 25 23 47 47 H 1.08999 * 109.47385 * 59.99601 * 26 25 23 48 48 H 1.09003 * 109.47189 * 179.97438 * 26 25 23 49 49 H 1.08994 * 109.47371 * 113.74891 * 27 9 7 50 50 H 1.09002 * 109.71187 * 353.45673 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0679 -0.8825 6 6 5.5944 1.7988 -0.5068 7 6 6.8108 2.2786 -1.1897 8 8 6.7202 2.8744 -2.2458 9 7 8.0226 2.0563 -0.6432 10 6 8.1425 1.4626 0.6954 11 6 9.0600 0.2385 0.6146 12 6 10.3945 0.6467 -0.0137 13 1 11.0581 -0.2173 -0.0498 14 7 11.0113 1.7022 0.7934 15 6 11.7742 1.3742 1.8822 16 1 11.9208 0.3373 2.1462 17 6 12.3582 2.3745 2.6473 18 7 12.1791 3.6382 2.3258 19 14 13.3983 1.9270 4.1330 20 1 14.5461 1.0902 3.6999 21 1 13.9045 3.1670 4.7744 22 1 12.5715 1.1682 5.1055 23 6 10.1544 1.1649 -1.4336 24 1 9.6729 0.3882 -2.0277 25 6 11.4925 1.5418 -2.0725 26 6 11.2660 1.9413 -3.5320 27 6 9.2494 2.3995 -1.3760 28 7 5.5635 1.0278 0.5936 29 7 4.3404 0.7967 0.9230 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9967 2.6647 -1.7267 38 1 7.1577 1.1585 1.0498 39 1 8.5685 2.1938 1.3825 40 1 9.2343 -0.1522 1.6172 41 1 8.5888 -0.5294 0.0012 42 1 10.8794 2.6336 0.5564 43 1 12.5875 4.3371 2.8601 44 1 11.9309 2.3796 -1.5303 45 1 12.1687 0.6879 -2.0303 46 1 10.8277 1.1036 -4.0743 47 1 10.5898 2.7952 -3.5743 48 1 12.2193 2.2103 -3.9872 49 1 9.7668 3.2081 -0.8597 50 1 8.9969 2.7150 -2.3883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:21 Heat of formation + Delta-G solvation = 74.905763 kcal Electronic energy + Delta-G solvation = -29952.074056 eV Core-core repulsion = 26016.994326 eV Total energy + Delta-G solvation = -3935.079731 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.34231 -39.70903 -37.65437 -36.35105 -34.35205 -33.65369 -32.88596 -31.57319 -30.98313 -29.27023 -28.49749 -27.35048 -25.32192 -23.75745 -23.53189 -23.10601 -22.60023 -21.72611 -20.64540 -19.85737 -18.39767 -17.39673 -17.24486 -16.52808 -16.17447 -15.84531 -15.44691 -14.96658 -14.83206 -14.41411 -14.33525 -13.96631 -13.83281 -13.64260 -13.27540 -13.15692 -13.03278 -12.89783 -12.58435 -12.48427 -12.30390 -12.18589 -12.00999 -11.79063 -11.38845 -11.31414 -11.22501 -10.95400 -10.78842 -10.66297 -10.52303 -10.34941 -10.20238 -10.12557 -10.04915 -9.68036 -9.50801 -9.40816 -9.34481 -8.77885 -8.07633 -6.86791 -5.70247 -2.97644 1.03680 1.72215 1.84108 3.30208 3.45467 3.48156 3.53083 3.53406 3.93756 4.14403 4.23580 4.50549 4.63581 4.65379 4.71602 4.84110 4.87672 5.04721 5.19155 5.22529 5.38005 5.42102 5.44421 5.48311 5.55562 5.66014 5.66605 5.74716 5.79926 5.91047 5.95230 6.00054 6.12435 6.19665 6.21151 6.28900 6.41586 6.47554 6.54721 6.65972 6.72430 6.81390 6.90990 6.93644 7.08464 7.18358 7.75136 7.76849 7.95612 8.41749 8.48639 9.59931 10.18020 10.53205 11.52377 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.003012 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.569864 B = 9292.743534 C =10690.016645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.121 3.879 4 N -0.362 5.362 5 C 0.088 3.912 6 C -0.088 4.088 7 C 0.597 3.403 8 O -0.556 6.556 9 N -0.581 5.581 10 C 0.078 3.922 11 C -0.142 4.142 12 C 0.176 3.824 13 H 0.049 0.951 14 N -0.718 5.718 15 C -0.233 4.233 16 H 0.068 0.932 17 C -0.013 4.013 18 N -0.934 5.934 19 Si 0.904 3.096 20 H -0.288 1.288 21 H -0.293 1.293 22 H -0.287 1.287 23 C -0.102 4.102 24 H 0.065 0.935 25 C -0.110 4.110 26 C -0.153 4.153 27 C 0.119 3.881 28 N -0.196 5.196 29 N -0.068 5.068 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.203 0.797 38 H 0.127 0.873 39 H 0.077 0.923 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.077 0.923 45 H 0.061 0.939 46 H 0.047 0.953 47 H 0.053 0.947 48 H 0.049 0.951 49 H 0.076 0.924 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.764 -4.993 -9.095 24.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.147 5.147 5 C -0.069 4.069 6 C -0.227 4.227 7 C 0.383 3.617 8 O -0.434 6.434 9 N -0.311 5.311 10 C -0.045 4.045 11 C -0.184 4.184 12 C 0.066 3.934 13 H 0.067 0.933 14 N -0.360 5.360 15 C -0.364 4.364 16 H 0.086 0.914 17 C -0.209 4.209 18 N -0.582 5.582 19 Si 0.735 3.265 20 H -0.215 1.215 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.122 4.122 24 H 0.084 0.916 25 C -0.148 4.148 26 C -0.210 4.210 27 C -0.003 4.003 28 N -0.069 5.069 29 N -0.047 5.047 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.220 0.780 38 H 0.143 0.857 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.064 0.936 42 H 0.219 0.781 43 H 0.064 0.936 44 H 0.095 0.905 45 H 0.080 0.920 46 H 0.066 0.934 47 H 0.072 0.928 48 H 0.068 0.932 49 H 0.094 0.906 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.697 -5.616 -8.242 23.879 hybrid contribution 0.445 0.695 0.100 0.831 sum -21.252 -4.921 -8.142 23.284 Atomic orbital electron populations 1.21704 0.93902 1.02851 1.02309 1.21833 0.96888 0.94623 1.04316 1.22140 0.72722 1.00038 1.05080 1.50538 1.08685 1.35227 1.20292 1.23327 0.90094 0.97332 0.96125 1.21560 0.94664 1.07651 0.98845 1.16808 0.81790 0.79348 0.83790 1.90753 1.86358 1.43220 1.23113 1.47951 1.04676 1.59876 1.18549 1.22710 1.03761 0.96194 0.81816 1.22426 0.97797 0.96364 1.01768 1.20265 0.92116 0.92487 0.88511 0.93323 1.42452 1.58695 1.03955 1.30915 1.19179 1.22102 0.92333 1.02805 0.91356 1.24685 1.01415 0.95260 0.99559 1.69640 1.49110 0.98243 1.41256 0.86320 0.80334 0.76735 0.83093 1.21460 1.21902 1.21408 1.21742 0.95542 0.97100 0.97849 0.91637 1.21417 0.96339 1.02473 0.94547 1.21858 1.01045 1.01029 0.97116 1.21736 0.83751 0.97606 0.97197 1.74342 1.11518 1.10829 1.10187 1.82017 0.93802 1.16979 1.11901 0.91654 0.92077 0.92261 0.91023 0.89939 0.88373 0.87786 0.78013 0.85652 0.90487 0.90957 0.93592 0.78148 0.93597 0.90462 0.92037 0.93426 0.92765 0.93212 0.90598 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.50 9.91 37.16 0.37 -0.13 16 2 C -0.14 -0.72 6.14 -26.73 -0.16 -0.88 16 3 C 0.12 0.63 6.54 -4.04 -0.03 0.61 16 4 N -0.36 -3.56 3.69 -61.06 -0.23 -3.79 16 5 C 0.09 0.95 11.28 -16.84 -0.19 0.76 16 6 C -0.09 -1.31 6.75 -83.56 -0.56 -1.87 16 7 C 0.60 10.32 7.68 -12.48 -0.10 10.22 16 8 O -0.56 -10.35 16.32 5.28 0.09 -10.27 16 9 N -0.58 -10.42 2.98 -173.97 -0.52 -10.94 16 10 C 0.08 1.45 6.05 -3.71 -0.02 1.43 16 11 C -0.14 -2.64 5.78 -26.61 -0.15 -2.79 16 12 C 0.18 3.49 2.53 -67.89 -0.17 3.31 16 13 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 14 N -0.72 -17.17 3.72 -53.39 -0.20 -17.37 16 15 C -0.23 -6.27 9.93 -15.06 -0.15 -6.42 16 16 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 17 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 18 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 19 Si 0.90 22.41 29.55 -169.99 -5.02 17.38 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 23 C -0.10 -1.76 2.14 -90.50 -0.19 -1.95 16 24 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 25 C -0.11 -1.82 5.19 -26.73 -0.14 -1.96 16 26 C -0.15 -2.14 9.67 37.16 0.36 -1.78 16 27 C 0.12 2.13 5.01 -3.69 -0.02 2.11 16 28 N -0.20 -3.04 8.70 32.84 0.29 -2.75 16 29 N -0.07 -0.92 13.65 60.35 0.82 -0.09 16 30 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.15 8.14 -51.93 -0.42 -0.28 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.10 0.26 8.08 -51.93 -0.42 -0.16 16 37 H 0.20 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.13 2.24 3.66 -121.53 -0.44 1.79 16 39 H 0.08 1.66 7.74 -51.93 -0.40 1.25 16 40 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.38 9.81 5.94 -40.82 -0.24 9.57 16 43 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.05 0.76 6.70 -51.93 -0.35 0.41 16 48 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.08 1.50 6.64 -51.93 -0.34 1.15 16 50 H 0.09 1.48 5.77 -51.93 -0.30 1.18 16 LS Contribution 395.32 15.07 5.96 5.96 Total: -1.00 -32.53 395.32 -7.71 -40.23 By element: Atomic # 1 Polarization: 16.91 SS G_CDS: -8.36 Total: 8.55 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -1.26 Total: 0.17 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: 0.89 Total: -62.03 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.53 -7.71 -40.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.140 kcal (2) G-P(sol) polarization free energy of solvation -32.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds