Wall clock time and date at job start Tue Mar 31 2020 19:00:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46879 * 2 1 4 4 N 1.46501 * 109.47290 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59839 * 125.29429 * 4 3 2 6 6 C 1.36596 * 106.84004 * 180.13463 * 5 4 3 7 7 C 1.47516 * 125.76802 * 179.90095 * 6 5 4 8 8 O 1.21595 * 120.00360 * 353.26163 * 7 6 5 9 9 N 1.34776 * 120.00033 * 173.26887 * 7 6 5 10 10 C 1.46928 * 120.62945 * 353.64717 * 9 7 6 11 11 C 1.53191 * 108.88931 * 126.46536 * 10 9 7 12 12 C 1.53043 * 109.31298 * 54.56833 * 11 10 9 13 13 H 1.09000 * 109.45454 * 178.61479 * 12 11 10 14 14 N 1.46493 * 109.46226 * 58.65291 * 12 11 10 15 15 C 1.36938 * 120.00102 * 85.00351 * 14 12 11 16 16 H 1.07993 * 119.99759 * 359.97438 * 15 14 12 17 17 C 1.38815 * 119.99997 * 180.02562 * 15 14 12 18 18 N 1.31619 * 119.99798 * 359.97438 * 17 15 14 19 19 Si 1.86793 * 120.00017 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47284 * 59.99734 * 19 17 15 21 21 H 1.48500 * 109.47352 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47070 * 299.99432 * 19 17 15 23 23 C 1.53043 * 109.53550 * 298.62983 * 12 11 10 24 24 H 1.09005 * 109.49572 * 301.41510 * 23 12 11 25 25 C 1.52994 * 109.49446 * 181.32157 * 23 12 11 26 26 C 1.53003 * 109.46856 * 175.00112 * 25 23 12 27 27 C 1.46963 * 120.65543 * 173.47200 * 9 7 6 28 28 N 1.34396 * 108.45618 * 359.63189 * 6 5 4 29 29 N 1.28760 * 109.52960 * 0.22825 * 28 6 5 30 30 H 1.09000 * 109.46660 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47660 * 299.99763 * 1 2 3 32 32 H 1.09003 * 109.47360 * 60.00073 * 1 2 3 33 33 H 1.08993 * 109.47233 * 240.00021 * 2 1 3 34 34 H 1.09003 * 109.47360 * 119.99927 * 2 1 3 35 35 H 1.09006 * 109.46887 * 59.99948 * 3 2 1 36 36 H 1.08997 * 109.47437 * 300.00346 * 3 2 1 37 37 H 1.07997 * 126.57628 * 359.97438 * 5 4 3 38 38 H 1.09000 * 109.58337 * 6.60716 * 10 9 7 39 39 H 1.09003 * 109.58431 * 246.32259 * 10 9 7 40 40 H 1.09005 * 109.49287 * 174.51182 * 11 10 9 41 41 H 1.08993 * 109.49849 * 294.61049 * 11 10 9 42 42 H 0.97007 * 119.99769 * 264.99629 * 14 12 11 43 43 H 0.96999 * 120.00107 * 180.02562 * 18 17 15 44 44 H 1.09005 * 109.47319 * 294.99693 * 25 23 12 45 45 H 1.09001 * 109.47468 * 55.00297 * 25 23 12 46 46 H 1.08998 * 109.47430 * 299.99733 * 26 25 23 47 47 H 1.08999 * 109.47385 * 59.99601 * 26 25 23 48 48 H 1.09003 * 109.47189 * 179.97438 * 26 25 23 49 49 H 1.08994 * 109.47371 * 113.74891 * 27 9 7 50 50 H 1.09002 * 109.71187 * 353.45673 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0679 -0.8825 6 6 5.5944 1.7988 -0.5068 7 6 6.8108 2.2786 -1.1897 8 8 6.7202 2.8744 -2.2458 9 7 8.0226 2.0563 -0.6432 10 6 8.1425 1.4626 0.6954 11 6 9.0600 0.2385 0.6146 12 6 10.3945 0.6467 -0.0137 13 1 11.0581 -0.2173 -0.0498 14 7 11.0113 1.7022 0.7934 15 6 11.7742 1.3742 1.8822 16 1 11.9208 0.3373 2.1462 17 6 12.3582 2.3745 2.6473 18 7 12.1791 3.6382 2.3258 19 14 13.3983 1.9270 4.1330 20 1 14.5461 1.0902 3.6999 21 1 13.9045 3.1670 4.7744 22 1 12.5715 1.1682 5.1055 23 6 10.1544 1.1649 -1.4336 24 1 9.6729 0.3882 -2.0277 25 6 11.4925 1.5418 -2.0725 26 6 11.2660 1.9413 -3.5320 27 6 9.2494 2.3995 -1.3760 28 7 5.5635 1.0278 0.5936 29 7 4.3404 0.7967 0.9230 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6765 1.9563 0.8900 36 1 1.6766 1.9564 -0.8899 37 1 3.9967 2.6647 -1.7267 38 1 7.1577 1.1585 1.0498 39 1 8.5685 2.1938 1.3825 40 1 9.2343 -0.1522 1.6172 41 1 8.5888 -0.5294 0.0012 42 1 10.8794 2.6336 0.5564 43 1 12.5875 4.3371 2.8601 44 1 11.9309 2.3796 -1.5303 45 1 12.1687 0.6879 -2.0303 46 1 10.8277 1.1036 -4.0743 47 1 10.5898 2.7952 -3.5743 48 1 12.2193 2.2103 -3.9872 49 1 9.7668 3.2081 -0.8597 50 1 8.9969 2.7150 -2.3883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970980.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:20 Heat of formation + Delta-G solvation = 54.694886 kcal Electronic energy + Delta-G solvation = -29952.950466 eV Core-core repulsion = 26016.994326 eV Total energy + Delta-G solvation = -3935.956140 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.32106 -41.12089 -39.12446 -36.98441 -35.85429 -35.31864 -33.60939 -33.36935 -32.02037 -30.97515 -29.91398 -28.01576 -26.75666 -25.49403 -25.04553 -24.10603 -23.56754 -22.44472 -22.05109 -21.02167 -19.85116 -19.24675 -18.52089 -17.54267 -17.20391 -17.04037 -16.60007 -16.23845 -15.96571 -15.89644 -15.72932 -15.34215 -15.17134 -14.78437 -14.61367 -14.41782 -14.29496 -14.05892 -13.67210 -13.54455 -13.42578 -13.13430 -12.94976 -12.86299 -12.80873 -12.63085 -12.54332 -12.31984 -12.31911 -12.15106 -11.82248 -11.77711 -11.61470 -11.45673 -11.41929 -11.27516 -11.13377 -10.99610 -10.60154 -10.36853 -9.55556 -8.89151 -7.86621 -5.12460 0.15524 0.56816 1.11212 1.49089 1.51138 1.56686 1.98396 2.19930 2.61053 3.10880 3.32663 3.46752 3.66595 3.84511 3.85051 3.89487 3.95314 4.10053 4.13136 4.15431 4.18644 4.31047 4.43106 4.47969 4.49161 4.49373 4.55774 4.64140 4.67003 4.75216 4.81679 4.89067 5.01760 5.10582 5.12807 5.16233 5.19619 5.20094 5.27863 5.32102 5.33644 5.39381 5.48633 5.52138 5.56583 5.62182 5.73684 6.35126 6.39815 6.84215 7.10788 7.42213 8.19010 8.43268 9.36701 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013257 B = 0.003012 C = 0.002619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.569864 B = 9292.743534 C =10690.016645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.135 4.135 3 C 0.110 3.890 4 N -0.345 5.345 5 C 0.114 3.886 6 C -0.122 4.122 7 C 0.599 3.401 8 O -0.571 6.571 9 N -0.588 5.588 10 C 0.090 3.910 11 C -0.134 4.134 12 C 0.171 3.829 13 H 0.047 0.953 14 N -0.723 5.723 15 C -0.226 4.226 16 H 0.073 0.927 17 C -0.075 4.075 18 N -0.970 5.970 19 Si 0.965 3.035 20 H -0.280 1.280 21 H -0.301 1.301 22 H -0.282 1.282 23 C -0.091 4.091 24 H 0.085 0.915 25 C -0.104 4.104 26 C -0.145 4.145 27 C 0.126 3.874 28 N -0.225 5.225 29 N -0.087 5.087 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.113 0.887 36 H 0.143 0.857 37 H 0.241 0.759 38 H 0.140 0.860 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.067 0.933 42 H 0.373 0.627 43 H 0.247 0.753 44 H 0.044 0.956 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.051 0.949 48 H 0.060 0.940 49 H 0.048 0.952 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.188 -5.929 -10.538 27.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.008 4.008 4 N -0.130 5.130 5 C -0.043 4.043 6 C -0.262 4.262 7 C 0.386 3.614 8 O -0.451 6.451 9 N -0.318 5.318 10 C -0.034 4.034 11 C -0.175 4.175 12 C 0.063 3.937 13 H 0.065 0.935 14 N -0.364 5.364 15 C -0.358 4.358 16 H 0.091 0.909 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.795 3.205 20 H -0.207 1.207 21 H -0.227 1.227 22 H -0.208 1.208 23 C -0.111 4.111 24 H 0.103 0.897 25 C -0.143 4.143 26 C -0.203 4.203 27 C 0.003 3.997 28 N -0.097 5.097 29 N -0.066 5.066 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.131 0.869 36 H 0.161 0.839 37 H 0.257 0.743 38 H 0.156 0.844 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.207 0.793 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.167 -6.613 -9.686 26.863 hybrid contribution 1.008 0.947 0.487 1.466 sum -23.159 -5.666 -9.199 25.555 Atomic orbital electron populations 1.21676 0.92219 1.03065 1.03322 1.21784 0.98209 0.94330 1.02981 1.22688 0.69791 1.00612 1.07754 1.50860 1.10099 1.33324 1.18724 1.23824 0.88636 0.95802 0.96078 1.21424 0.95123 1.09751 0.99884 1.17093 0.82096 0.78597 0.83613 1.90729 1.86671 1.43907 1.23781 1.47955 1.05180 1.60344 1.18278 1.22531 1.04198 0.94938 0.81689 1.22299 0.97102 0.96827 1.01247 1.20472 0.92294 0.91341 0.89643 0.93510 1.42549 1.58640 1.04399 1.30766 1.19537 1.20954 0.92404 1.02950 0.90878 1.25401 1.03504 0.95290 1.02512 1.69805 1.50784 0.99041 1.42474 0.85330 0.78977 0.76062 0.80103 1.20662 1.22713 1.20821 1.21652 0.95956 0.97176 0.96303 0.89680 1.21336 0.95673 1.01189 0.96074 1.21786 1.01826 1.01555 0.95096 1.21602 0.83888 0.97062 0.97124 1.74154 1.12824 1.11784 1.10936 1.81926 0.93642 1.18014 1.13058 0.91921 0.91514 0.90771 0.91704 0.92017 0.86928 0.83897 0.74274 0.84352 0.94363 0.92264 0.91476 0.79348 0.94404 0.93702 0.91945 0.91713 0.92959 0.92090 0.93380 0.88811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.57 9.91 71.98 0.71 0.14 16 2 C -0.13 -1.09 6.14 30.59 0.19 -0.90 16 3 C 0.11 0.77 6.54 86.38 0.56 1.33 16 4 N -0.35 -5.90 3.69 -347.09 -1.28 -7.18 16 5 C 0.11 2.15 11.28 83.85 0.95 3.09 16 6 C -0.12 -3.48 6.75 40.82 0.28 -3.21 16 7 C 0.60 20.32 7.68 86.69 0.67 20.98 16 8 O -0.57 -20.59 16.32 -4.02 -0.07 -20.65 16 9 N -0.59 -21.30 2.98 -822.58 -2.45 -23.75 16 10 C 0.09 3.42 6.05 86.36 0.52 3.95 16 11 C -0.13 -5.00 5.78 30.67 0.18 -4.82 16 12 C 0.17 6.83 2.53 45.02 0.11 6.95 16 13 H 0.05 1.89 8.08 -2.39 -0.02 1.87 16 14 N -0.72 -35.74 3.72 -322.82 -1.20 -36.94 16 15 C -0.23 -12.44 9.93 84.03 0.83 -11.61 16 16 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 17 C -0.08 -4.33 5.50 84.86 0.47 -3.86 16 18 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 19 Si 0.96 46.99 29.55 68.60 2.03 49.02 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 21 H -0.30 -14.90 7.11 99.48 0.71 -14.19 16 22 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 23 C -0.09 -3.11 2.14 -10.72 -0.02 -3.13 16 24 H 0.08 2.62 8.14 -2.38 -0.02 2.60 16 25 C -0.10 -3.45 5.19 30.59 0.16 -3.29 16 26 C -0.15 -3.84 9.67 71.98 0.70 -3.14 16 27 C 0.13 4.55 5.01 86.36 0.43 4.98 16 28 N -0.22 -6.86 8.70 -50.00 -0.44 -7.29 16 29 N -0.09 -2.26 13.65 37.02 0.51 -1.76 16 30 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 31 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.07 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.14 -0.02 8.08 -2.39 -0.02 -0.04 16 37 H 0.24 2.50 8.06 -2.91 -0.02 2.48 16 38 H 0.14 5.04 3.66 -92.45 -0.34 4.70 16 39 H 0.04 1.74 7.74 -2.39 -0.02 1.72 16 40 H 0.06 2.35 8.14 -2.38 -0.02 2.33 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.37 20.08 5.94 -92.70 -0.55 19.52 16 43 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.04 1.77 7.70 -2.38 -0.02 1.75 16 45 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.05 1.40 6.70 -2.39 -0.02 1.38 16 48 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.05 2.01 6.64 -2.39 -0.02 1.99 16 50 H 0.09 3.23 5.77 -2.39 -0.01 3.22 16 Total: -1.00 -72.91 395.32 4.17 -68.74 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.06 Total: 31.93 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: 6.73 Total: 7.45 kcal Atomic # 7 Polarization: -131.91 SS G_CDS: -4.58 Total: -136.49 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.07 Total: -20.65 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -72.91 4.17 -68.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970980.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.436 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds