Wall clock time and date at job start Tue Mar 31 2020 19:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 N 1.46497 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.34816 * 126.59731 * 125.00308 * 4 3 2 6 6 C 1.36591 * 106.84086 * 179.73312 * 5 4 3 7 7 C 1.47524 * 125.76959 * 180.02562 * 6 5 4 8 8 O 1.21599 * 120.00142 * 353.27677 * 7 6 5 9 9 N 1.34778 * 119.99854 * 173.27878 * 7 6 5 10 10 C 1.46923 * 120.63336 * 3.78836 * 9 7 6 11 11 C 1.52764 * 109.00479 * 233.58484 * 10 9 7 12 12 C 1.53042 * 109.38156 * 305.58284 * 11 10 9 13 13 H 1.08992 * 109.46244 * 301.21991 * 12 11 10 14 14 N 1.46501 * 109.45713 * 181.26406 * 12 11 10 15 15 C 1.36932 * 120.00202 * 84.93168 * 14 12 11 16 16 H 1.08005 * 119.99795 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00157 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00215 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00317 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47183 * 90.00034 * 19 17 15 21 21 H 1.48497 * 109.47621 * 210.00537 * 19 17 15 22 22 H 1.48511 * 109.46716 * 330.00304 * 19 17 15 23 23 C 1.53043 * 109.53697 * 61.24483 * 12 11 10 24 24 H 1.09002 * 109.52053 * 58.60354 * 23 12 11 25 25 C 1.53001 * 109.49598 * 178.68060 * 23 12 11 26 26 C 1.52995 * 109.46960 * 184.83847 * 25 23 12 27 27 C 1.46934 * 120.62587 * 184.06516 * 9 7 6 28 28 N 1.34400 * 108.45949 * 359.97438 * 6 5 4 29 29 N 1.28756 * 109.52253 * 0.02562 * 28 6 5 30 30 H 1.08994 * 109.46823 * 299.99474 * 1 2 3 31 31 H 1.08992 * 109.47298 * 59.99780 * 1 2 3 32 32 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47118 * 239.99980 * 2 1 3 34 34 H 1.09000 * 109.47596 * 120.00234 * 2 1 3 35 35 H 1.08994 * 109.46791 * 60.00506 * 3 2 1 36 36 H 1.09000 * 109.47025 * 300.00584 * 3 2 1 37 37 H 1.08001 * 126.57747 * 359.75460 * 5 4 3 38 38 H 1.08998 * 109.58418 * 353.41289 * 10 9 7 39 39 H 1.08998 * 109.58953 * 113.84395 * 10 9 7 40 40 H 1.09000 * 109.56113 * 185.55139 * 11 10 9 41 41 H 1.09000 * 109.36218 * 65.49538 * 11 10 9 42 42 H 0.97000 * 119.99946 * 264.93203 * 14 12 11 43 43 H 0.96999 * 119.99728 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47157 * 304.83666 * 25 23 12 45 45 H 1.08995 * 109.46963 * 64.83567 * 25 23 12 46 46 H 1.08995 * 109.47511 * 60.00056 * 26 25 23 47 47 H 1.09000 * 109.47214 * 180.02562 * 26 25 23 48 48 H 1.09004 * 109.47037 * 299.99892 * 26 25 23 49 49 H 1.09003 * 109.58559 * 246.15394 * 27 9 7 50 50 H 1.08993 * 109.58707 * 6.43829 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3084 2.0634 -0.8874 6 6 5.5940 1.8035 -0.5063 7 6 6.8099 2.2848 -1.1892 8 8 6.7193 2.8732 -2.2495 9 7 8.0213 2.0724 -0.6378 10 6 8.1540 1.2917 0.5997 11 6 8.9344 2.1129 1.6246 12 6 10.2663 2.5544 1.0137 13 1 10.8372 1.6758 0.7136 14 7 11.0293 3.3165 2.0053 15 6 11.8132 2.6615 2.9171 16 1 11.8694 1.5830 2.9050 17 6 12.5365 3.3836 3.8564 18 7 12.4685 4.6980 3.8709 19 14 13.6066 2.4901 5.0998 20 1 14.9732 2.3192 4.5446 21 1 13.6771 3.2835 6.3531 22 1 13.0199 1.1570 5.3903 23 6 10.0014 3.4331 -0.2110 24 1 9.4096 4.2998 0.0836 25 6 11.3330 3.9009 -0.8016 26 6 11.0670 4.8751 -1.9509 27 6 9.2336 2.6223 -1.2598 28 7 5.5641 1.0360 0.5966 29 7 4.3412 0.8020 0.9248 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9954 2.6535 -1.7361 38 1 7.1644 1.0621 0.9948 39 1 8.6908 0.3661 0.3921 40 1 9.1237 1.5065 2.5103 41 1 8.3524 2.9917 1.9023 42 1 10.9791 4.2852 2.0160 43 1 12.9737 5.2026 4.5275 44 1 11.9174 4.4010 -0.0292 45 1 11.8869 3.0400 -1.1759 46 1 10.5132 5.7360 -1.5766 47 1 12.0157 5.2081 -2.3719 48 1 10.4827 4.3750 -2.7233 49 1 9.8602 1.8073 -1.6221 50 1 8.9562 3.2680 -2.0928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037970982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:29 Heat of formation + Delta-G solvation = 72.707470 kcal Electronic energy + Delta-G solvation = -29523.486834 eV Core-core repulsion = 25588.311778 eV Total energy + Delta-G solvation = -3935.175056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44954 -39.80196 -37.66327 -36.42728 -34.66014 -33.71841 -32.97000 -31.62924 -31.10192 -29.38415 -28.71084 -27.40706 -25.33834 -23.82752 -23.59575 -22.95133 -22.32262 -21.70252 -20.70160 -20.00519 -19.19999 -17.61638 -17.00852 -16.63348 -16.34924 -16.00926 -15.50353 -15.03714 -14.90522 -14.74677 -14.15118 -14.02676 -13.82562 -13.63694 -13.29702 -13.21286 -13.17684 -12.94280 -12.67888 -12.51774 -12.39343 -12.25589 -12.03102 -11.92106 -11.55332 -11.42141 -11.20625 -10.96896 -10.83908 -10.66609 -10.60864 -10.38756 -10.25049 -10.14084 -10.07177 -9.81802 -9.54347 -9.49914 -9.44902 -8.78564 -8.34339 -6.87660 -5.71169 -2.98942 0.94314 1.60509 1.75174 3.09829 3.33049 3.46934 3.52444 3.53759 3.86550 4.02757 4.17611 4.42506 4.54055 4.63776 4.65727 4.76521 4.79244 4.99283 5.10650 5.15418 5.28977 5.37799 5.39817 5.43623 5.49493 5.58840 5.61748 5.68221 5.71079 5.74644 5.80417 5.94893 6.03888 6.10552 6.19729 6.23509 6.36042 6.46683 6.49574 6.57443 6.58490 6.72241 6.83350 6.95797 7.05854 7.19625 7.55554 7.75672 7.81671 8.25220 8.47423 9.58702 10.17158 10.52265 11.51474 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002717 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.845250 B =10303.325241 C =11875.711849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.360 5.360 5 C 0.090 3.910 6 C -0.090 4.090 7 C 0.600 3.400 8 O -0.552 6.552 9 N -0.586 5.586 10 C 0.068 3.932 11 C -0.146 4.146 12 C 0.182 3.818 13 H 0.047 0.953 14 N -0.721 5.721 15 C -0.233 4.233 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.933 5.933 19 Si 0.904 3.096 20 H -0.291 1.291 21 H -0.293 1.293 22 H -0.282 1.282 23 C -0.104 4.104 24 H 0.069 0.931 25 C -0.112 4.112 26 C -0.152 4.152 27 C 0.119 3.881 28 N -0.200 5.200 29 N -0.065 5.065 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.105 0.895 37 H 0.204 0.796 38 H 0.136 0.864 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.084 0.916 45 H 0.057 0.943 46 H 0.051 0.949 47 H 0.049 0.951 48 H 0.049 0.951 49 H 0.067 0.933 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.889 -6.527 -12.543 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.067 4.067 6 C -0.229 4.229 7 C 0.386 3.614 8 O -0.430 6.430 9 N -0.316 5.316 10 C -0.056 4.056 11 C -0.187 4.187 12 C 0.071 3.929 13 H 0.065 0.935 14 N -0.361 5.361 15 C -0.364 4.364 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.582 5.582 19 Si 0.736 3.264 20 H -0.219 1.219 21 H -0.219 1.219 22 H -0.208 1.208 23 C -0.124 4.124 24 H 0.087 0.913 25 C -0.150 4.150 26 C -0.210 4.210 27 C -0.003 4.003 28 N -0.072 5.072 29 N -0.044 5.044 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.221 0.779 38 H 0.152 0.848 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.102 0.898 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.068 0.932 49 H 0.085 0.915 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.826 -7.212 -11.721 26.654 hybrid contribution 0.484 0.504 0.074 0.702 sum -22.342 -6.708 -11.647 26.074 Atomic orbital electron populations 1.21704 0.93845 1.02891 1.02353 1.21836 0.96955 0.94561 1.04302 1.22168 0.72570 1.00110 1.05202 1.50546 1.08769 1.35284 1.19938 1.23337 0.90047 0.97256 0.96033 1.21511 0.94637 1.08073 0.98686 1.16804 0.81700 0.79054 0.83857 1.90767 1.86308 1.43964 1.21952 1.47976 1.05551 1.51716 1.26340 1.22858 1.05582 0.93471 0.83663 1.22524 0.98241 0.99782 0.98187 1.20237 0.90761 0.93725 0.88132 0.93490 1.42411 1.52664 1.05759 1.35266 1.19227 1.18507 0.91239 1.07465 0.91248 1.24716 1.01038 0.95460 0.99848 1.69664 1.45893 1.04417 1.38235 0.86230 0.80617 0.78519 0.81076 1.21856 1.21928 1.20819 1.21774 0.96294 0.98661 0.95642 0.91253 1.21452 0.96608 0.98946 0.97977 1.21845 1.00925 0.99615 0.98595 1.21809 0.84563 0.97730 0.96240 1.74240 1.11690 1.11049 1.10242 1.82018 0.93720 1.16907 1.11773 0.92041 0.92240 0.91624 0.91022 0.89930 0.88256 0.87710 0.77933 0.84753 0.92032 0.90693 0.92617 0.78283 0.93640 0.89790 0.92441 0.93021 0.93215 0.93194 0.91499 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 37.16 0.37 -0.06 16 2 C -0.14 -0.63 6.14 -26.73 -0.16 -0.79 16 3 C 0.12 0.55 6.54 -4.04 -0.03 0.52 16 4 N -0.36 -3.24 3.69 -61.07 -0.23 -3.47 16 5 C 0.09 0.88 11.28 -16.84 -0.19 0.69 16 6 C -0.09 -1.22 6.77 -83.55 -0.57 -1.78 16 7 C 0.60 9.39 7.69 -12.47 -0.10 9.30 16 8 O -0.55 -9.45 16.30 5.28 0.09 -9.37 16 9 N -0.59 -9.26 2.98 -174.26 -0.52 -9.78 16 10 C 0.07 1.08 6.28 -3.93 -0.02 1.05 16 11 C -0.15 -2.72 5.64 -26.83 -0.15 -2.87 16 12 C 0.18 3.62 2.20 -67.89 -0.15 3.47 16 13 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 14 N -0.72 -17.79 4.33 -53.39 -0.23 -18.03 16 15 C -0.23 -6.40 9.93 -15.06 -0.15 -6.55 16 16 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 17 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -28.19 13.06 55.49 0.72 -27.47 16 19 Si 0.90 22.54 29.55 -169.99 -5.02 17.52 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 21 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 C -0.10 -1.79 1.93 -90.50 -0.17 -1.96 16 24 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 25 C -0.11 -1.87 5.31 -26.73 -0.14 -2.01 16 26 C -0.15 -2.16 9.67 37.15 0.36 -1.80 16 27 C 0.12 1.84 5.31 -3.71 -0.02 1.82 16 28 N -0.20 -2.84 8.64 32.85 0.28 -2.55 16 29 N -0.06 -0.82 13.65 60.35 0.82 0.01 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.20 8.08 -51.93 -0.42 -0.22 16 37 H 0.20 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.14 2.11 3.62 -129.73 -0.47 1.64 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.38 10.17 7.51 -40.82 -0.31 9.87 16 43 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.08 1.67 7.22 -51.93 -0.37 1.29 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.65 6.70 -51.93 -0.35 0.30 16 49 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.09 1.40 5.75 -51.93 -0.30 1.10 16 LS Contribution 398.76 15.07 6.01 6.01 Total: -1.00 -33.22 398.76 -7.82 -41.04 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -8.52 Total: 7.58 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -1.22 Total: -1.50 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.86 Total: -61.28 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.37 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.22 -7.82 -41.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.744 kcal (2) G-P(sol) polarization free energy of solvation -33.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds