Wall clock time and date at job start Tue Mar 31 2020 19:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47223 * 2 1 4 4 N 1.46497 * 109.47073 * 180.02562 * 3 2 1 5 5 C 1.34816 * 126.59731 * 125.00308 * 4 3 2 6 6 C 1.36591 * 106.84086 * 179.73312 * 5 4 3 7 7 C 1.47524 * 125.76959 * 180.02562 * 6 5 4 8 8 O 1.21599 * 120.00142 * 353.27677 * 7 6 5 9 9 N 1.34778 * 119.99854 * 173.27878 * 7 6 5 10 10 C 1.46923 * 120.63336 * 3.78836 * 9 7 6 11 11 C 1.52764 * 109.00479 * 233.58484 * 10 9 7 12 12 C 1.53042 * 109.38156 * 305.58284 * 11 10 9 13 13 H 1.08992 * 109.46244 * 301.21991 * 12 11 10 14 14 N 1.46501 * 109.45713 * 181.26406 * 12 11 10 15 15 C 1.36932 * 120.00202 * 84.93168 * 14 12 11 16 16 H 1.08005 * 119.99795 * 0.02562 * 15 14 12 17 17 C 1.38809 * 120.00157 * 179.97438 * 15 14 12 18 18 N 1.31624 * 120.00215 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00317 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47183 * 90.00034 * 19 17 15 21 21 H 1.48497 * 109.47621 * 210.00537 * 19 17 15 22 22 H 1.48511 * 109.46716 * 330.00304 * 19 17 15 23 23 C 1.53043 * 109.53697 * 61.24483 * 12 11 10 24 24 H 1.09002 * 109.52053 * 58.60354 * 23 12 11 25 25 C 1.53001 * 109.49598 * 178.68060 * 23 12 11 26 26 C 1.52995 * 109.46960 * 184.83847 * 25 23 12 27 27 C 1.46934 * 120.62587 * 184.06516 * 9 7 6 28 28 N 1.34400 * 108.45949 * 359.97438 * 6 5 4 29 29 N 1.28756 * 109.52253 * 0.02562 * 28 6 5 30 30 H 1.08994 * 109.46823 * 299.99474 * 1 2 3 31 31 H 1.08992 * 109.47298 * 59.99780 * 1 2 3 32 32 H 1.09004 * 109.47040 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47118 * 239.99980 * 2 1 3 34 34 H 1.09000 * 109.47596 * 120.00234 * 2 1 3 35 35 H 1.08994 * 109.46791 * 60.00506 * 3 2 1 36 36 H 1.09000 * 109.47025 * 300.00584 * 3 2 1 37 37 H 1.08001 * 126.57747 * 359.75460 * 5 4 3 38 38 H 1.08998 * 109.58418 * 353.41289 * 10 9 7 39 39 H 1.08998 * 109.58953 * 113.84395 * 10 9 7 40 40 H 1.09000 * 109.56113 * 185.55139 * 11 10 9 41 41 H 1.09000 * 109.36218 * 65.49538 * 11 10 9 42 42 H 0.97000 * 119.99946 * 264.93203 * 14 12 11 43 43 H 0.96999 * 119.99728 * 179.97438 * 18 17 15 44 44 H 1.09004 * 109.47157 * 304.83666 * 25 23 12 45 45 H 1.08995 * 109.46963 * 64.83567 * 25 23 12 46 46 H 1.08995 * 109.47511 * 60.00056 * 26 25 23 47 47 H 1.09000 * 109.47214 * 180.02562 * 26 25 23 48 48 H 1.09004 * 109.47037 * 299.99892 * 26 25 23 49 49 H 1.09003 * 109.58559 * 246.15394 * 27 9 7 50 50 H 1.08993 * 109.58707 * 6.43829 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.3084 2.0634 -0.8874 6 6 5.5940 1.8035 -0.5063 7 6 6.8099 2.2848 -1.1892 8 8 6.7193 2.8732 -2.2495 9 7 8.0213 2.0724 -0.6378 10 6 8.1540 1.2917 0.5997 11 6 8.9344 2.1129 1.6246 12 6 10.2663 2.5544 1.0137 13 1 10.8372 1.6758 0.7136 14 7 11.0293 3.3165 2.0053 15 6 11.8132 2.6615 2.9171 16 1 11.8694 1.5830 2.9050 17 6 12.5365 3.3836 3.8564 18 7 12.4685 4.6980 3.8709 19 14 13.6066 2.4901 5.0998 20 1 14.9732 2.3192 4.5446 21 1 13.6771 3.2835 6.3531 22 1 13.0199 1.1570 5.3903 23 6 10.0014 3.4331 -0.2110 24 1 9.4096 4.2998 0.0836 25 6 11.3330 3.9009 -0.8016 26 6 11.0670 4.8751 -1.9509 27 6 9.2336 2.6223 -1.2598 28 7 5.5641 1.0360 0.5966 29 7 4.3412 0.8020 0.9248 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6768 1.9562 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9954 2.6535 -1.7361 38 1 7.1644 1.0621 0.9948 39 1 8.6908 0.3661 0.3921 40 1 9.1237 1.5065 2.5103 41 1 8.3524 2.9917 1.9023 42 1 10.9791 4.2852 2.0160 43 1 12.9737 5.2026 4.5275 44 1 11.9174 4.4010 -0.0292 45 1 11.8869 3.0400 -1.1759 46 1 10.5132 5.7360 -1.5766 47 1 12.0157 5.2081 -2.3719 48 1 10.4827 4.3750 -2.7233 49 1 9.8602 1.8073 -1.6221 50 1 8.9562 3.2680 -2.0928 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001037970982.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:00:28 Heat of formation + Delta-G solvation = 51.688329 kcal Electronic energy + Delta-G solvation = -29524.398292 eV Core-core repulsion = 25588.311778 eV Total energy + Delta-G solvation = -3936.086514 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.32844 -41.07853 -39.06838 -36.99774 -36.16612 -35.30432 -33.62084 -33.43075 -32.04937 -31.07183 -30.00096 -28.02037 -26.84948 -25.29618 -24.89655 -23.80309 -23.48577 -22.42183 -22.12020 -21.24259 -20.49613 -19.08187 -18.52635 -17.60540 -17.22258 -17.09780 -16.71015 -16.19825 -15.96157 -15.84838 -15.59676 -15.39664 -15.22216 -14.72214 -14.57877 -14.47119 -14.39150 -13.90352 -13.68576 -13.63845 -13.51276 -13.14924 -13.00474 -12.89620 -12.83171 -12.74406 -12.50645 -12.37088 -12.24291 -12.13405 -11.83836 -11.77603 -11.64957 -11.50153 -11.45371 -11.28860 -11.11148 -11.07111 -10.63576 -10.37709 -9.63652 -8.93561 -7.90030 -5.17251 0.15178 0.56846 1.10295 1.48068 1.49195 1.57417 1.93338 2.20890 2.58557 3.08094 3.31869 3.43233 3.65784 3.80410 3.83863 3.84016 3.94583 4.03548 4.12813 4.16877 4.20589 4.30667 4.35772 4.40861 4.47821 4.50094 4.55521 4.65485 4.67324 4.80088 4.81851 4.83634 4.89569 5.02792 5.09637 5.12368 5.16050 5.18195 5.28835 5.33011 5.36399 5.40463 5.50061 5.52358 5.56239 5.59405 5.73200 6.31071 6.33914 6.83020 7.09457 7.37867 8.13852 8.38111 9.33465 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013921 B = 0.002717 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.845250 B =10303.325241 C =11875.711849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.345 5.345 5 C 0.113 3.887 6 C -0.122 4.122 7 C 0.601 3.399 8 O -0.568 6.568 9 N -0.592 5.592 10 C 0.079 3.921 11 C -0.135 4.135 12 C 0.178 3.822 13 H 0.046 0.954 14 N -0.730 5.730 15 C -0.229 4.229 16 H 0.075 0.925 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.968 3.032 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.271 1.271 23 C -0.092 4.092 24 H 0.053 0.947 25 C -0.106 4.106 26 C -0.145 4.145 27 C 0.126 3.874 28 N -0.225 5.225 29 N -0.088 5.088 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.112 0.888 36 H 0.143 0.857 37 H 0.241 0.759 38 H 0.143 0.857 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.037 0.963 42 H 0.371 0.629 43 H 0.248 0.752 44 H 0.046 0.954 45 H 0.064 0.936 46 H 0.046 0.954 47 H 0.060 0.940 48 H 0.067 0.933 49 H 0.082 0.918 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.971 -7.375 -14.247 29.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.173 4.173 3 C -0.009 4.009 4 N -0.130 5.130 5 C -0.045 4.045 6 C -0.262 4.262 7 C 0.388 3.612 8 O -0.448 6.448 9 N -0.322 5.322 10 C -0.044 4.044 11 C -0.176 4.176 12 C 0.070 3.930 13 H 0.064 0.936 14 N -0.369 5.369 15 C -0.361 4.361 16 H 0.093 0.907 17 C -0.270 4.270 18 N -0.622 5.622 19 Si 0.798 3.202 20 H -0.216 1.216 21 H -0.226 1.226 22 H -0.196 1.196 23 C -0.112 4.112 24 H 0.071 0.929 25 C -0.145 4.145 26 C -0.202 4.202 27 C 0.003 3.997 28 N -0.097 5.097 29 N -0.067 5.067 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.161 0.839 37 H 0.257 0.743 38 H 0.160 0.840 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.056 0.944 42 H 0.203 0.797 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.085 0.915 49 H 0.100 0.900 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.959 -8.116 -13.436 29.485 hybrid contribution 0.962 0.747 0.542 1.333 sum -23.997 -7.369 -12.894 28.221 Atomic orbital electron populations 1.21677 0.92299 1.03064 1.03298 1.21782 0.98157 0.94313 1.03016 1.22682 0.69846 1.00622 1.07726 1.50853 1.10102 1.33542 1.18502 1.23844 0.88743 0.95819 0.96048 1.21453 0.95205 1.09959 0.99582 1.17045 0.82041 0.78435 0.83653 1.90745 1.86617 1.44750 1.22649 1.48003 1.05977 1.51951 1.26267 1.22747 1.05654 0.93030 0.83018 1.22322 0.97537 0.99213 0.98493 1.20437 0.90640 0.93656 0.88281 0.93624 1.42566 1.53061 1.05364 1.35865 1.19582 1.17707 0.91571 1.07252 0.90739 1.25486 1.03084 0.96194 1.02188 1.69824 1.47316 1.05840 1.39171 0.85211 0.78914 0.77698 0.78396 1.21557 1.22578 1.19555 1.21621 0.96723 0.97789 0.95057 0.92878 1.21354 0.95737 0.99535 0.97851 1.21776 1.01816 0.98815 0.97803 1.21740 0.84571 0.97994 0.95378 1.74087 1.12808 1.11891 1.10934 1.81933 0.93685 1.18034 1.13038 0.91584 0.90777 0.91911 0.91606 0.91999 0.87025 0.83903 0.74317 0.84031 0.91003 0.92210 0.94363 0.79738 0.94288 0.93492 0.91696 0.93490 0.92049 0.91453 0.90030 0.88552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.47 9.91 71.98 0.71 0.24 16 2 C -0.13 -0.95 6.14 30.59 0.19 -0.76 16 3 C 0.11 0.66 6.54 86.38 0.56 1.22 16 4 N -0.35 -5.39 3.69 -347.11 -1.28 -6.67 16 5 C 0.11 1.91 11.28 83.85 0.95 2.85 16 6 C -0.12 -3.14 6.77 40.82 0.28 -2.87 16 7 C 0.60 18.05 7.69 86.69 0.67 18.72 16 8 O -0.57 -18.45 16.30 -4.03 -0.07 -18.51 16 9 N -0.59 -18.21 2.98 -823.49 -2.45 -20.66 16 10 C 0.08 2.49 6.28 86.22 0.54 3.03 16 11 C -0.13 -5.12 5.64 30.53 0.17 -4.94 16 12 C 0.18 7.23 2.20 45.02 0.10 7.33 16 13 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 14 N -0.73 -37.15 4.33 -322.81 -1.40 -38.55 16 15 C -0.23 -12.79 9.93 84.03 0.83 -11.95 16 16 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 17 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 18 N -0.97 -60.30 13.06 21.65 0.28 -60.02 16 19 Si 0.97 47.04 29.55 68.60 2.03 49.06 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 23 C -0.09 -3.18 1.93 -10.72 -0.02 -3.20 16 24 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 25 C -0.11 -3.57 5.31 30.59 0.16 -3.41 16 26 C -0.14 -3.95 9.67 71.98 0.70 -3.25 16 27 C 0.13 3.73 5.31 86.36 0.46 4.19 16 28 N -0.23 -6.26 8.64 -50.00 -0.43 -6.69 16 29 N -0.09 -2.12 13.65 37.02 0.51 -1.62 16 30 H 0.07 0.17 8.14 -2.39 -0.02 0.15 16 31 H 0.07 0.05 8.14 -2.39 -0.02 0.03 16 32 H 0.06 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.11 0.48 8.14 -2.39 -0.02 0.47 16 36 H 0.14 -0.16 8.08 -2.39 -0.02 -0.18 16 37 H 0.24 2.08 8.06 -2.91 -0.02 2.05 16 38 H 0.14 4.44 3.62 -103.05 -0.37 4.07 16 39 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.37 20.57 7.51 -92.71 -0.70 19.88 16 43 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.05 1.93 7.22 -2.38 -0.02 1.91 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 48 H 0.07 1.61 6.70 -2.38 -0.02 1.59 16 49 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 50 H 0.10 2.81 5.75 -2.39 -0.01 2.79 16 Total: -1.00 -73.79 398.76 3.83 -69.96 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.12 Total: 30.55 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: 6.77 Total: 3.15 kcal Atomic # 7 Polarization: -129.43 SS G_CDS: -4.78 Total: -134.21 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.07 Total: -18.51 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.06 kcal Total: -73.79 3.83 -69.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037970982.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.646 kcal (2) G-P(sol) polarization free energy of solvation -73.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.957 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds