Wall clock time and date at job start Tue Mar 31 2020 18:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47366 * 2 1 4 4 H 1.09004 * 109.49901 * 55.06725 * 3 2 1 5 5 C 1.53194 * 109.49782 * 295.00170 * 3 2 1 6 6 N 1.46927 * 108.77397 * 185.37944 * 5 3 2 7 7 C 1.34773 * 120.62932 * 233.58302 * 6 5 3 8 8 O 1.21283 * 120.00360 * 359.73029 * 7 6 5 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.47348 * 179.72561 * 9 7 6 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.35359 * 126.74615 * 124.71382 * 11 10 9 13 13 N 1.35311 * 106.17207 * 179.85312 * 12 11 10 14 14 C 1.46503 * 125.86918 * 180.11655 * 13 12 11 15 15 N 1.28715 * 108.26505 * 0.41810 * 13 12 11 16 16 N 1.28640 * 110.17959 * 359.73294 * 15 13 12 17 17 C 1.46920 * 118.73693 * 53.86414 * 6 5 3 18 18 C 1.53624 * 108.54629 * 306.08894 * 17 6 5 19 19 C 1.53039 * 109.23883 * 54.85831 * 18 17 6 20 20 H 1.08996 * 109.46168 * 178.49612 * 19 18 17 21 21 N 1.46493 * 109.46319 * 58.53144 * 19 18 17 22 22 C 1.36947 * 119.99856 * 84.93044 * 21 19 18 23 23 H 1.07999 * 119.99918 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99797 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99518 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00437 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47343 * 89.99565 * 26 24 22 28 28 H 1.48498 * 109.47227 * 210.00519 * 26 24 22 29 29 H 1.48506 * 109.47034 * 329.99557 * 26 24 22 30 30 H 1.08997 * 109.47060 * 59.99831 * 1 2 3 31 31 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46764 * 300.00318 * 1 2 3 33 33 H 1.09002 * 109.46335 * 239.99933 * 2 1 3 34 34 H 1.08997 * 109.47060 * 120.00169 * 2 1 3 35 35 H 1.09006 * 109.58516 * 65.59785 * 5 3 2 36 36 H 1.08996 * 109.58528 * 305.16814 * 5 3 2 37 37 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 38 38 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 39 39 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 40 40 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 41 41 H 1.07998 * 126.91109 * 359.97438 * 12 11 10 42 42 H 1.08996 * 109.47184 * 270.32838 * 14 13 12 43 43 H 1.09003 * 109.46851 * 30.32978 * 14 13 12 44 44 H 1.08999 * 109.46747 * 150.32435 * 14 13 12 45 45 H 1.08997 * 109.58983 * 65.92432 * 17 6 5 46 46 H 1.09010 * 109.58497 * 186.34847 * 17 6 5 47 47 H 1.08997 * 109.63248 * 294.86961 * 18 17 6 48 48 H 1.08999 * 109.46210 * 174.73977 * 18 17 6 49 49 H 0.97002 * 120.00435 * 264.93582 * 21 19 18 50 50 H 0.97000 * 119.99504 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2410 3.4659 -1.3489 7 6 1.4806 4.5578 -1.5634 8 8 0.2850 4.4411 -1.7303 9 6 2.1170 5.9234 -1.6023 10 6 1.0420 6.9797 -1.8658 11 6 1.6784 8.3452 -1.9041 12 6 1.5988 9.2478 -2.9097 13 7 2.3158 10.3230 -2.5087 14 6 2.5135 11.5567 -3.2736 15 7 2.7995 10.0731 -1.3424 16 7 2.4377 8.9014 -0.9536 17 6 3.6923 3.5902 -1.1571 18 6 4.0735 2.8888 0.1555 19 6 3.5656 1.4456 0.1220 20 1 3.8574 0.9365 1.0405 21 7 4.1485 0.7496 -1.0277 22 6 5.3869 0.1742 -0.9240 23 1 5.9337 0.2333 0.0055 24 6 5.9395 -0.4848 -2.0136 25 7 7.1300 -1.0373 -1.9141 26 14 4.9942 -0.5864 -3.6215 27 1 5.3353 0.5828 -4.4710 28 1 5.3594 -1.8381 -4.3322 29 1 3.5362 -0.5848 -3.3395 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5496 2.2169 -1.3540 36 1 1.9913 1.5400 -2.1546 37 1 2.5997 6.1266 -0.6464 38 1 2.8606 5.9551 -2.3987 39 1 0.5594 6.7764 -2.8217 40 1 0.2986 6.9480 -1.0693 41 1 1.0680 9.1336 -3.8433 42 1 3.4019 11.4589 -3.8976 43 1 1.6436 11.7358 -3.9055 44 1 2.6421 12.3933 -2.5869 45 1 4.2128 3.1190 -1.9908 46 1 3.9647 4.6443 -1.1023 47 1 3.6209 3.4143 0.9963 48 1 5.1578 2.8904 0.2664 49 1 3.6574 0.6962 -1.8625 50 1 7.5159 -1.4982 -2.6753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038003242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:05 Heat of formation + Delta-G solvation = 68.009954 kcal Electronic energy + Delta-G solvation = -29609.200799 eV Core-core repulsion = 25673.822043 eV Total energy + Delta-G solvation = -3935.378756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.50958 -40.16607 -38.03394 -35.42561 -34.51305 -33.90062 -33.58556 -31.73586 -30.58056 -29.78580 -28.80630 -28.21177 -25.96944 -24.27021 -23.74617 -23.08741 -22.37111 -21.21137 -20.81690 -19.45090 -18.17946 -17.90056 -17.56967 -16.92915 -16.76954 -15.79348 -15.71554 -15.08303 -14.79314 -14.52030 -14.22450 -14.16025 -13.83503 -13.71341 -13.57974 -13.35279 -13.28655 -12.99593 -12.71327 -12.44300 -12.39955 -12.38725 -11.89292 -11.72291 -11.59953 -11.43782 -11.24050 -11.09042 -10.92325 -10.90020 -10.76515 -10.35688 -10.33316 -10.30194 -10.20641 -9.79852 -9.62256 -9.54770 -9.35674 -8.94162 -8.30628 -7.27510 -5.78761 -3.13684 1.29480 2.03658 2.27526 2.80017 3.22639 3.33719 3.36546 3.43137 3.97172 4.21308 4.47407 4.48855 4.56335 4.71171 4.77030 4.83649 4.98212 5.08388 5.12743 5.16329 5.26605 5.35656 5.38833 5.43747 5.52627 5.56737 5.59662 5.68336 5.70270 5.80466 5.82626 5.92275 5.94356 6.04302 6.06650 6.11083 6.22973 6.23762 6.30387 6.36406 6.47919 6.55645 6.61687 6.70437 6.79567 6.93953 7.65625 7.98297 8.24976 8.34497 8.40578 9.19001 9.91613 10.11673 11.39773 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002807 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.440391 B = 9971.036888 C =11032.902030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.111 4.111 3 C -0.106 4.106 4 H 0.072 0.928 5 C 0.117 3.883 6 N -0.604 5.604 7 C 0.515 3.485 8 O -0.556 6.556 9 C -0.133 4.133 10 C -0.015 4.015 11 C -0.015 4.015 12 C -0.050 4.050 13 N -0.297 5.297 14 C 0.082 3.918 15 N -0.087 5.087 16 N -0.262 5.262 17 C 0.111 3.889 18 C -0.149 4.149 19 C 0.184 3.816 20 H 0.060 0.940 21 N -0.744 5.744 22 C -0.238 4.238 23 H 0.091 0.909 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.878 3.122 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.052 0.948 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.089 0.911 36 H 0.064 0.936 37 H 0.102 0.898 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.191 0.809 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.101 0.899 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.054 0.946 48 H 0.079 0.921 49 H 0.360 0.640 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.119 21.220 -2.760 25.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.149 4.149 3 C -0.126 4.126 4 H 0.090 0.910 5 C -0.005 4.005 6 N -0.336 5.336 7 C 0.303 3.697 8 O -0.435 6.435 9 C -0.173 4.173 10 C -0.055 4.055 11 C -0.153 4.153 12 C -0.200 4.200 13 N -0.091 5.091 14 C -0.060 4.060 15 N -0.067 5.067 16 N -0.129 5.129 17 C -0.012 4.012 18 C -0.190 4.190 19 C 0.074 3.926 20 H 0.078 0.922 21 N -0.387 5.387 22 C -0.368 4.368 23 H 0.108 0.892 24 C -0.190 4.190 25 N -0.582 5.582 26 Si 0.708 3.292 27 H -0.212 1.212 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.208 0.792 42 H 0.110 0.890 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.072 0.928 48 H 0.097 0.903 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -12.636 21.640 -1.628 25.112 hybrid contribution -0.903 -0.366 -2.328 2.523 sum -13.539 21.274 -3.956 25.525 Atomic orbital electron populations 1.21856 0.96643 1.01118 1.01479 1.21434 0.94474 0.95772 1.03269 1.21799 0.97399 0.96153 0.97292 0.90972 1.21664 0.99086 0.81885 0.97883 1.48178 1.08759 1.06532 1.70168 1.20569 0.86823 0.86182 0.76086 1.90651 1.15020 1.86846 1.50969 1.21603 0.99338 0.91407 1.05001 1.19607 0.96278 0.85197 1.04375 1.22080 1.02193 0.99097 0.91921 1.23423 1.04310 0.88862 1.03443 1.47241 1.33471 1.14504 1.13858 1.22261 1.04456 0.82942 0.96302 1.78328 1.19244 1.12405 0.96700 1.75072 1.12466 1.00757 1.24630 1.21860 0.78880 1.00604 0.99825 1.22564 1.02283 0.98650 0.95515 1.20194 0.89449 0.90776 0.92138 0.92237 1.42845 1.19535 1.65879 1.10477 1.19065 0.91800 1.26778 0.99186 0.89159 1.24635 0.96459 1.00379 0.97519 1.69695 1.16281 1.41424 1.30779 0.86663 0.79650 0.77404 0.85444 1.21210 1.21789 1.20375 0.92861 0.93098 0.93116 0.91146 0.91566 0.89274 0.91783 0.88015 0.89033 0.89409 0.89274 0.79217 0.89032 0.88327 0.88054 0.90305 0.90607 0.92765 0.90253 0.80617 0.93113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.67 37.16 0.36 -1.62 16 2 C -0.11 -1.69 5.19 -26.73 -0.14 -1.83 16 3 C -0.11 -1.65 2.14 -90.50 -0.19 -1.84 16 4 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 5 C 0.12 1.86 5.02 -3.71 -0.02 1.84 16 6 N -0.60 -9.18 2.97 -172.50 -0.51 -9.69 16 7 C 0.51 7.56 7.70 -10.98 -0.08 7.48 16 8 O -0.56 -9.51 15.40 5.56 0.09 -9.43 16 9 C -0.13 -1.55 4.02 -27.88 -0.11 -1.67 16 10 C -0.01 -0.16 5.08 -27.89 -0.14 -0.30 16 11 C -0.01 -0.16 6.50 -82.78 -0.54 -0.70 16 12 C -0.05 -0.40 11.54 -17.04 -0.20 -0.60 16 13 N -0.30 -2.46 3.74 -68.05 -0.25 -2.72 16 14 C 0.08 0.23 11.39 59.85 0.68 0.92 16 15 N -0.09 -1.06 13.17 60.35 0.79 -0.26 16 16 N -0.26 -3.51 12.40 33.29 0.41 -3.09 16 17 C 0.11 1.66 6.11 -3.49 -0.02 1.64 16 18 C -0.15 -2.38 5.80 -26.39 -0.15 -2.53 16 19 C 0.18 3.29 2.53 -67.89 -0.17 3.12 16 20 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 21 N -0.74 -16.13 3.52 -53.39 -0.19 -16.32 16 22 C -0.24 -6.31 10.41 -15.05 -0.16 -6.47 16 23 H 0.09 2.58 8.06 -52.49 -0.42 2.16 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -28.60 13.97 55.49 0.78 -27.83 16 26 Si 0.88 21.55 27.74 -169.99 -4.71 16.84 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 29 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 30 H 0.05 0.69 6.70 -51.93 -0.35 0.34 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 1.22 7.70 -51.93 -0.40 0.82 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.09 1.42 5.72 -51.93 -0.30 1.12 16 36 H 0.06 1.11 6.64 -51.93 -0.34 0.76 16 37 H 0.10 1.20 7.72 -51.93 -0.40 0.80 16 38 H 0.09 0.99 7.92 -51.93 -0.41 0.58 16 39 H 0.09 0.84 8.08 -51.93 -0.42 0.42 16 40 H 0.09 1.01 8.10 -51.93 -0.42 0.59 16 41 H 0.19 0.79 8.06 -52.49 -0.42 0.37 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.10 0.03 8.14 -51.93 -0.42 -0.40 16 44 H 0.10 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.08 1.35 7.73 -51.93 -0.40 0.95 16 46 H 0.08 0.96 5.94 -51.92 -0.31 0.65 16 47 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 49 H 0.36 7.87 3.80 -40.82 -0.16 7.72 16 50 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -34.57 394.05 -6.79 -41.36 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -8.14 Total: 7.71 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -0.98 Total: -2.50 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: 1.03 Total: -59.91 kcal Atomic # 8 Polarization: -9.51 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.57 -6.79 -41.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038003242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.367 kcal (2) G-P(sol) polarization free energy of solvation -34.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.357 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds