Wall clock time and date at job start Tue Mar 31 2020 18:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47366 * 2 1 4 4 H 1.09004 * 109.49901 * 55.06725 * 3 2 1 5 5 C 1.53194 * 109.49782 * 295.00170 * 3 2 1 6 6 N 1.46927 * 108.77397 * 185.37944 * 5 3 2 7 7 C 1.34773 * 120.62932 * 233.58302 * 6 5 3 8 8 O 1.21283 * 120.00360 * 359.73029 * 7 6 5 9 9 C 1.50706 * 120.00081 * 180.02562 * 7 6 5 10 10 C 1.52998 * 109.47348 * 179.72561 * 9 7 6 11 11 C 1.50696 * 109.46969 * 179.97438 * 10 9 7 12 12 C 1.35359 * 126.74615 * 124.71382 * 11 10 9 13 13 N 1.35311 * 106.17207 * 179.85312 * 12 11 10 14 14 C 1.46503 * 125.86918 * 180.11655 * 13 12 11 15 15 N 1.28715 * 108.26505 * 0.41810 * 13 12 11 16 16 N 1.28640 * 110.17959 * 359.73294 * 15 13 12 17 17 C 1.46920 * 118.73693 * 53.86414 * 6 5 3 18 18 C 1.53624 * 108.54629 * 306.08894 * 17 6 5 19 19 C 1.53039 * 109.23883 * 54.85831 * 18 17 6 20 20 H 1.08996 * 109.46168 * 178.49612 * 19 18 17 21 21 N 1.46493 * 109.46319 * 58.53144 * 19 18 17 22 22 C 1.36947 * 119.99856 * 84.93044 * 21 19 18 23 23 H 1.07999 * 119.99918 * 0.02562 * 22 21 19 24 24 C 1.38813 * 119.99797 * 180.02562 * 22 21 19 25 25 N 1.31625 * 119.99518 * 179.97438 * 24 22 21 26 26 Si 1.86795 * 120.00437 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47343 * 89.99565 * 26 24 22 28 28 H 1.48498 * 109.47227 * 210.00519 * 26 24 22 29 29 H 1.48506 * 109.47034 * 329.99557 * 26 24 22 30 30 H 1.08997 * 109.47060 * 59.99831 * 1 2 3 31 31 H 1.09000 * 109.47504 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46764 * 300.00318 * 1 2 3 33 33 H 1.09002 * 109.46335 * 239.99933 * 2 1 3 34 34 H 1.08997 * 109.47060 * 120.00169 * 2 1 3 35 35 H 1.09006 * 109.58516 * 65.59785 * 5 3 2 36 36 H 1.08996 * 109.58528 * 305.16814 * 5 3 2 37 37 H 1.09001 * 109.46564 * 299.73030 * 9 7 6 38 38 H 1.08998 * 109.47012 * 59.72084 * 9 7 6 39 39 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 40 40 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 41 41 H 1.07998 * 126.91109 * 359.97438 * 12 11 10 42 42 H 1.08996 * 109.47184 * 270.32838 * 14 13 12 43 43 H 1.09003 * 109.46851 * 30.32978 * 14 13 12 44 44 H 1.08999 * 109.46747 * 150.32435 * 14 13 12 45 45 H 1.08997 * 109.58983 * 65.92432 * 17 6 5 46 46 H 1.09010 * 109.58497 * 186.34847 * 17 6 5 47 47 H 1.08997 * 109.63248 * 294.86961 * 18 17 6 48 48 H 1.08999 * 109.46210 * 174.73977 * 18 17 6 49 49 H 0.97002 * 120.00435 * 264.93582 * 21 19 18 50 50 H 0.97000 * 119.99504 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6066 1.9816 0.8424 5 6 1.6351 2.1280 -1.3088 6 7 2.2410 3.4659 -1.3489 7 6 1.4806 4.5578 -1.5634 8 8 0.2850 4.4411 -1.7303 9 6 2.1170 5.9234 -1.6023 10 6 1.0420 6.9797 -1.8658 11 6 1.6784 8.3452 -1.9041 12 6 1.5988 9.2478 -2.9097 13 7 2.3158 10.3230 -2.5087 14 6 2.5135 11.5567 -3.2736 15 7 2.7995 10.0731 -1.3424 16 7 2.4377 8.9014 -0.9536 17 6 3.6923 3.5902 -1.1571 18 6 4.0735 2.8888 0.1555 19 6 3.5656 1.4456 0.1220 20 1 3.8574 0.9365 1.0405 21 7 4.1485 0.7496 -1.0277 22 6 5.3869 0.1742 -0.9240 23 1 5.9337 0.2333 0.0055 24 6 5.9395 -0.4848 -2.0136 25 7 7.1300 -1.0373 -1.9141 26 14 4.9942 -0.5864 -3.6215 27 1 5.3353 0.5828 -4.4710 28 1 5.3594 -1.8381 -4.3322 29 1 3.5362 -0.5848 -3.3395 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 0.5496 2.2169 -1.3540 36 1 1.9913 1.5400 -2.1546 37 1 2.5997 6.1266 -0.6464 38 1 2.8606 5.9551 -2.3987 39 1 0.5594 6.7764 -2.8217 40 1 0.2986 6.9480 -1.0693 41 1 1.0680 9.1336 -3.8433 42 1 3.4019 11.4589 -3.8976 43 1 1.6436 11.7358 -3.9055 44 1 2.6421 12.3933 -2.5869 45 1 4.2128 3.1190 -1.9908 46 1 3.9647 4.6443 -1.1023 47 1 3.6209 3.4143 0.9963 48 1 5.1578 2.8904 0.2664 49 1 3.6574 0.6962 -1.8625 50 1 7.5159 -1.4982 -2.6753 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038003242.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:04 Heat of formation + Delta-G solvation = 45.333681 kcal Electronic energy + Delta-G solvation = -29610.184116 eV Core-core repulsion = 25673.822043 eV Total energy + Delta-G solvation = -3936.362072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.19360 -41.41383 -39.35857 -36.11725 -35.92922 -35.39231 -34.39344 -33.54662 -31.43630 -31.41226 -29.98152 -28.69631 -27.10967 -25.58469 -24.97193 -24.78597 -23.00523 -22.16010 -21.93477 -20.69235 -19.87288 -19.48372 -18.39011 -17.73538 -17.55011 -16.97590 -16.84620 -16.50998 -16.00965 -15.78224 -15.58328 -15.16809 -14.99986 -14.91470 -14.57712 -14.44636 -14.22735 -14.07459 -13.90953 -13.72167 -13.47077 -13.32623 -13.18542 -12.96214 -12.80606 -12.66716 -12.56987 -12.44375 -12.28833 -12.14122 -12.00250 -11.86110 -11.62604 -11.59775 -11.51327 -11.16097 -10.99514 -10.92156 -10.72420 -10.10943 -9.60997 -9.22202 -7.97475 -5.28269 0.66819 1.37131 1.38319 1.45676 1.48769 1.60540 1.64474 2.05962 2.49937 3.31722 3.34770 3.58164 3.62477 3.76448 3.81618 3.97002 4.01219 4.07313 4.16411 4.16940 4.28599 4.30536 4.35355 4.40300 4.43148 4.45793 4.58104 4.61676 4.65605 4.70924 4.78538 4.82145 4.89684 4.98242 5.02864 5.05281 5.14696 5.16170 5.20514 5.24487 5.26618 5.30007 5.39326 5.49511 5.65994 5.71342 5.85063 6.26661 6.46495 7.13349 7.17056 7.52610 7.90121 8.08859 9.24560 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013245 B = 0.002807 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.440391 B = 9971.036888 C =11032.902030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.110 4.110 3 C -0.095 4.095 4 H 0.088 0.912 5 C 0.120 3.880 6 N -0.606 5.606 7 C 0.517 3.483 8 O -0.578 6.578 9 C -0.125 4.125 10 C -0.006 4.006 11 C -0.038 4.038 12 C -0.032 4.032 13 N -0.289 5.289 14 C 0.069 3.931 15 N -0.125 5.125 16 N -0.303 5.303 17 C 0.117 3.883 18 C -0.143 4.143 19 C 0.177 3.823 20 H 0.048 0.952 21 N -0.741 5.741 22 C -0.211 4.211 23 H 0.060 0.940 24 C -0.061 4.061 25 N -0.985 5.985 26 Si 0.940 3.060 27 H -0.280 1.280 28 H -0.301 1.301 29 H -0.256 1.256 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.050 0.950 37 H 0.101 0.899 38 H 0.104 0.896 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.232 0.768 42 H 0.106 0.894 43 H 0.131 0.869 44 H 0.105 0.895 45 H 0.057 0.943 46 H 0.103 0.897 47 H 0.077 0.923 48 H 0.063 0.937 49 H 0.362 0.638 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.495 23.438 -4.150 28.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C -0.115 4.115 4 H 0.106 0.894 5 C -0.003 4.003 6 N -0.338 5.338 7 C 0.307 3.693 8 O -0.459 6.459 9 C -0.165 4.165 10 C -0.046 4.046 11 C -0.177 4.177 12 C -0.183 4.183 13 N -0.083 5.083 14 C -0.070 4.070 15 N -0.104 5.104 16 N -0.169 5.169 17 C -0.006 4.006 18 C -0.184 4.184 19 C 0.069 3.931 20 H 0.066 0.934 21 N -0.385 5.385 22 C -0.342 4.342 23 H 0.078 0.922 24 C -0.252 4.252 25 N -0.637 5.637 26 Si 0.769 3.231 27 H -0.207 1.207 28 H -0.228 1.228 29 H -0.181 1.181 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.068 0.932 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.249 0.751 42 H 0.124 0.876 43 H 0.150 0.850 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.121 0.879 47 H 0.095 0.905 48 H 0.081 0.919 49 H 0.196 0.804 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.047 23.928 -2.984 28.423 hybrid contribution -0.192 -0.962 -1.833 2.079 sum -15.239 22.965 -4.817 27.979 Atomic orbital electron populations 1.21791 0.94501 1.02028 1.02066 1.21401 0.96344 0.95127 1.01952 1.21701 0.95199 0.96705 0.97888 0.89378 1.21574 0.99248 0.82233 0.97238 1.48212 1.08721 1.06522 1.70331 1.21034 0.86462 0.86826 0.74999 1.90641 1.16102 1.87239 1.51910 1.21579 0.99770 0.89744 1.05427 1.19502 0.95546 0.84969 1.04548 1.22217 1.03023 0.99740 0.92694 1.24027 1.02823 0.87664 1.03822 1.47671 1.31963 1.15715 1.12978 1.22732 1.06736 0.81050 0.96444 1.78239 1.20981 1.12453 0.98743 1.74994 1.13917 1.01707 1.26327 1.21784 0.78692 1.01906 0.98190 1.22441 1.01344 0.97415 0.97171 1.20413 0.91216 0.91375 0.90111 0.93438 1.42784 1.17998 1.65898 1.11802 1.19001 0.92784 1.24889 0.97542 0.92173 1.25315 0.97498 1.01291 1.01127 1.69866 1.18479 1.43658 1.31687 0.85633 0.79487 0.76832 0.81172 1.20689 1.22820 1.18073 0.92800 0.92119 0.91928 0.93418 0.91925 0.88921 0.93211 0.88039 0.87818 0.88136 0.90543 0.75115 0.87592 0.85035 0.87657 0.92413 0.87882 0.90457 0.91867 0.80360 0.93650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.67 71.98 0.70 -2.76 16 2 C -0.11 -3.21 5.19 30.59 0.16 -3.05 16 3 C -0.10 -2.80 2.14 -10.71 -0.02 -2.83 16 4 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 5 C 0.12 3.60 5.02 86.36 0.43 4.04 16 6 N -0.61 -17.24 2.97 -818.06 -2.43 -19.66 16 7 C 0.52 14.08 7.70 87.66 0.67 14.75 16 8 O -0.58 -18.63 15.40 -3.04 -0.05 -18.68 16 9 C -0.13 -2.66 4.02 29.85 0.12 -2.54 16 10 C -0.01 -0.12 5.08 29.85 0.15 0.03 16 11 C -0.04 -0.75 6.50 41.60 0.27 -0.48 16 12 C -0.03 -0.41 11.54 83.49 0.96 0.55 16 13 N -0.29 -4.10 3.74 -369.22 -1.38 -5.48 16 14 C 0.07 0.19 11.39 127.77 1.46 1.64 16 15 N -0.13 -2.92 13.17 37.02 0.49 -2.44 16 16 N -0.30 -7.89 12.40 -48.60 -0.60 -8.50 16 17 C 0.12 3.32 6.11 86.51 0.53 3.85 16 18 C -0.14 -4.41 5.80 30.82 0.18 -4.23 16 19 C 0.18 6.22 2.53 45.02 0.11 6.33 16 20 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 21 N -0.74 -32.05 3.52 -322.82 -1.14 -33.19 16 22 C -0.21 -11.39 10.41 84.03 0.87 -10.51 16 23 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 24 C -0.06 -3.52 5.50 84.86 0.47 -3.05 16 25 N -0.99 -62.26 13.97 21.65 0.30 -61.96 16 26 Si 0.94 44.94 27.74 68.60 1.90 46.84 16 27 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 28 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 29 H -0.26 -11.14 6.52 99.48 0.65 -10.49 16 30 H 0.05 1.27 6.70 -2.39 -0.02 1.25 16 31 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 33 H 0.05 1.60 7.70 -2.39 -0.02 1.58 16 34 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.09 2.76 5.72 -2.38 -0.01 2.75 16 36 H 0.05 1.64 6.64 -2.39 -0.02 1.63 16 37 H 0.10 2.20 7.72 -2.39 -0.02 2.18 16 38 H 0.10 1.97 7.92 -2.39 -0.02 1.95 16 39 H 0.10 1.64 8.08 -2.39 -0.02 1.63 16 40 H 0.08 1.65 8.10 -2.39 -0.02 1.63 16 41 H 0.23 0.79 8.06 -2.91 -0.02 0.76 16 42 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 43 H 0.13 -0.50 8.14 -2.39 -0.02 -0.52 16 44 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.06 1.91 7.73 -2.39 -0.02 1.90 16 46 H 0.10 2.38 5.94 -2.38 -0.01 2.36 16 47 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 49 H 0.36 15.53 3.80 -92.71 -0.35 15.18 16 50 H 0.25 15.48 8.31 -92.71 -0.77 14.71 16 Total: -1.00 -77.48 394.05 4.69 -72.79 By element: Atomic # 1 Polarization: 27.99 SS G_CDS: 0.53 Total: 28.52 kcal Atomic # 6 Polarization: -5.31 SS G_CDS: 7.06 Total: 1.76 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -4.76 Total: -131.23 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.90 Total: 46.84 kcal Total: -77.48 4.69 -72.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038003242.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.128 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.794 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds