Wall clock time and date at job start Tue Mar 31 2020 18:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46803 * 2 1 4 4 H 1.09002 * 109.49934 * 55.06424 * 3 2 1 5 5 C 1.53191 * 109.49407 * 294.99709 * 3 2 1 6 6 N 1.46925 * 108.77429 * 185.41541 * 5 3 2 7 7 C 1.34784 * 120.63233 * 233.58865 * 6 5 3 8 8 O 1.21280 * 119.99536 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46679 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.46933 * 179.97438 * 10 9 7 12 12 C 1.35361 * 126.74829 * 125.24323 * 11 10 9 13 13 N 1.35313 * 106.17197 * 180.12377 * 12 11 10 14 14 C 1.46499 * 125.86684 * 179.90335 * 13 12 11 15 15 N 1.28712 * 108.26322 * 359.64606 * 13 12 11 16 16 N 1.28634 * 110.18224 * 0.22427 * 15 13 12 17 17 C 1.46925 * 118.73873 * 53.85916 * 6 5 3 18 18 C 1.53619 * 108.54627 * 306.09711 * 17 6 5 19 19 C 1.53039 * 109.24328 * 54.85455 * 18 17 6 20 20 H 1.08994 * 109.44877 * 58.52117 * 19 18 17 21 21 N 1.46495 * 109.46162 * 178.49747 * 19 18 17 22 22 C 1.36941 * 119.99621 * 275.06136 * 21 19 18 23 23 H 1.08005 * 119.99897 * 0.02562 * 22 21 19 24 24 C 1.38815 * 120.00240 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00192 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99758 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47145 * 89.99612 * 26 24 22 28 28 H 1.48497 * 109.47045 * 209.99897 * 26 24 22 29 29 H 1.48504 * 109.47234 * 329.99681 * 26 24 22 30 30 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47517 * 300.00233 * 1 2 3 32 32 H 1.08995 * 109.47620 * 60.00488 * 1 2 3 33 33 H 1.09000 * 109.47212 * 239.99655 * 2 1 3 34 34 H 1.08996 * 109.47140 * 119.99301 * 2 1 3 35 35 H 1.09001 * 109.58496 * 65.63405 * 5 3 2 36 36 H 1.09003 * 109.70678 * 305.27317 * 5 3 2 37 37 H 1.08999 * 109.47544 * 60.00189 * 9 7 6 38 38 H 1.08996 * 109.46899 * 299.99602 * 9 7 6 39 39 H 1.08997 * 109.47434 * 59.99792 * 10 9 7 40 40 H 1.09003 * 109.46955 * 299.99779 * 10 9 7 41 41 H 1.07997 * 126.91163 * 0.02562 * 12 11 10 42 42 H 1.09002 * 109.47391 * 269.71876 * 14 13 12 43 43 H 1.09001 * 109.46813 * 149.71932 * 14 13 12 44 44 H 1.09004 * 109.47041 * 29.72059 * 14 13 12 45 45 H 1.09005 * 109.58797 * 65.93145 * 17 6 5 46 46 H 1.09003 * 109.58512 * 186.34975 * 17 6 5 47 47 H 1.08998 * 109.63106 * 294.86369 * 18 17 6 48 48 H 1.08997 * 109.46118 * 174.73726 * 18 17 6 49 49 H 0.96999 * 120.00643 * 95.07092 * 21 19 18 50 50 H 0.96998 * 119.99857 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2413 3.4656 -1.3495 7 6 1.4814 4.5579 -1.5639 8 8 0.2851 4.4419 -1.7260 9 6 2.1184 5.9231 -1.6033 10 6 1.0428 6.9804 -1.8605 11 6 1.6797 8.3457 -1.8993 12 6 1.5882 9.2539 -2.8988 13 7 2.3161 10.3239 -2.5036 14 6 2.5106 11.5590 -3.2670 15 7 2.8036 10.0723 -1.3393 16 7 2.4426 8.9003 -0.9508 17 6 3.6928 3.5894 -1.1579 18 6 4.0739 2.8881 0.1547 19 6 3.5655 1.4450 0.1217 20 1 3.9988 0.9271 -0.7339 21 7 3.9577 0.7610 1.3563 22 6 5.1961 0.1851 1.4563 23 1 5.8838 0.2356 0.6250 24 6 5.5680 -0.4626 2.6264 25 7 6.7585 -1.0156 2.7226 26 14 4.3789 -0.5493 4.0643 27 1 3.5462 -1.7732 3.9450 28 1 5.1432 -0.5927 5.3367 29 1 3.5018 0.6490 4.0543 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.5495 2.2173 -1.3538 36 1 1.9887 1.5405 -2.1561 37 1 2.8582 5.9559 -2.4031 38 1 2.6055 6.1244 -0.6493 39 1 0.3027 6.9478 -1.0611 40 1 0.5561 6.7789 -2.8148 41 1 1.0450 9.1456 -3.8259 42 1 3.3966 11.4626 -3.8946 43 1 2.6417 12.3944 -2.5792 44 1 1.6382 11.7391 -3.8952 45 1 4.2130 3.1178 -1.9917 46 1 3.9656 4.6433 -1.1034 47 1 3.6218 3.4140 0.9956 48 1 5.1583 2.8893 0.2655 49 1 3.3402 0.7158 2.1030 50 1 7.0181 -1.4686 3.5401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038003245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:10 Heat of formation + Delta-G solvation = 66.068643 kcal Electronic energy + Delta-G solvation = -29155.684789 eV Core-core repulsion = 25220.221852 eV Total energy + Delta-G solvation = -3935.462937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.54616 -40.18872 -37.97023 -35.47028 -34.80075 -33.97225 -33.60311 -31.74653 -30.64854 -29.83876 -28.91332 -28.24353 -25.93324 -24.36350 -23.81248 -22.42060 -22.36972 -21.21773 -20.79555 -19.90383 -18.85346 -17.71555 -17.48417 -16.97901 -16.85334 -15.87870 -15.76895 -15.13409 -14.91739 -14.41950 -14.24041 -14.15998 -13.78146 -13.74579 -13.62930 -13.36423 -13.28128 -12.95719 -12.71938 -12.59723 -12.44767 -12.31097 -11.92115 -11.80798 -11.72207 -11.52289 -11.37756 -11.00730 -10.99146 -10.90932 -10.73850 -10.43292 -10.37213 -10.29044 -10.18072 -9.75355 -9.67010 -9.56519 -9.40744 -8.90823 -8.47821 -7.25803 -5.76908 -3.12013 1.25949 2.00261 2.24049 2.70465 3.11534 3.38473 3.42040 3.46681 3.93211 4.17670 4.40928 4.45146 4.59691 4.65932 4.73784 4.76904 4.91489 5.03588 5.06162 5.11532 5.20565 5.25532 5.33097 5.39280 5.47547 5.52067 5.55869 5.62890 5.65451 5.76369 5.81973 5.87385 5.96411 6.00329 6.04609 6.07068 6.13846 6.20137 6.27792 6.32531 6.37359 6.49462 6.59685 6.73548 6.83921 6.98650 7.52361 7.99003 8.21905 8.24846 8.42340 9.20816 9.93727 10.13771 11.41407 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002456 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.949896 B =11399.140446 C =12582.863108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.109 4.109 4 H 0.069 0.931 5 C 0.120 3.880 6 N -0.607 5.607 7 C 0.516 3.484 8 O -0.552 6.552 9 C -0.134 4.134 10 C -0.015 4.015 11 C -0.016 4.016 12 C -0.050 4.050 13 N -0.297 5.297 14 C 0.082 3.918 15 N -0.086 5.086 16 N -0.262 5.262 17 C 0.106 3.894 18 C -0.152 4.152 19 C 0.188 3.812 20 H 0.056 0.944 21 N -0.745 5.745 22 C -0.241 4.241 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.934 5.934 26 Si 0.881 3.119 27 H -0.284 1.284 28 H -0.292 1.292 29 H -0.277 1.277 30 H 0.050 0.950 31 H 0.050 0.950 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.191 0.809 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.069 0.931 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.080 0.920 49 H 0.361 0.639 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 21.215 -16.430 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.151 4.151 3 C -0.129 4.129 4 H 0.087 0.913 5 C -0.003 4.003 6 N -0.340 5.340 7 C 0.305 3.695 8 O -0.431 6.431 9 C -0.174 4.174 10 C -0.055 4.055 11 C -0.154 4.154 12 C -0.201 4.201 13 N -0.091 5.091 14 C -0.060 4.060 15 N -0.066 5.066 16 N -0.129 5.129 17 C -0.018 4.018 18 C -0.193 4.193 19 C 0.079 3.921 20 H 0.074 0.926 21 N -0.387 5.387 22 C -0.370 4.370 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.582 5.582 26 Si 0.712 3.288 27 H -0.211 1.211 28 H -0.218 1.218 29 H -0.203 1.203 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.121 0.879 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.208 0.792 42 H 0.110 0.890 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.099 0.901 49 H 0.194 0.806 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.643 21.627 -15.408 28.995 hybrid contribution -1.113 -0.276 0.199 1.164 sum -12.756 21.351 -15.210 29.153 Atomic orbital electron populations 1.21855 0.96643 1.01138 1.01473 1.21459 0.94531 0.95753 1.03362 1.21831 0.97586 0.96230 0.97210 0.91256 1.21701 0.99478 0.81659 0.97445 1.48194 1.08574 1.06746 1.70444 1.20587 0.86850 0.86166 0.75935 1.90661 1.14918 1.86789 1.50756 1.21609 0.99358 0.91377 1.05046 1.19608 0.96263 0.85218 1.04400 1.22079 1.02148 0.99047 0.92099 1.23415 1.04040 0.88971 1.03648 1.47252 1.33074 1.14660 1.14082 1.22263 1.04462 0.82907 0.96342 1.78343 1.19335 1.12336 0.96589 1.75090 1.12575 1.00739 1.24453 1.21980 0.79243 1.01450 0.99096 1.22718 1.02596 0.98694 0.95285 1.20160 0.90687 0.90680 0.90612 0.92556 1.42784 1.16615 1.66261 1.13025 1.19047 0.90647 1.26931 1.00421 0.89218 1.24654 0.96427 1.00341 0.97659 1.69694 1.19239 1.41609 1.27624 0.86597 0.80958 0.77827 0.83438 1.21095 1.21838 1.20317 0.93077 0.93078 0.92913 0.91940 0.90553 0.89099 0.91614 0.89034 0.87925 0.89252 0.89382 0.79219 0.89022 0.88051 0.88318 0.91286 0.90150 0.92163 0.90129 0.80615 0.93100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.67 37.16 0.36 -1.64 16 2 C -0.11 -1.72 5.31 -26.73 -0.14 -1.86 16 3 C -0.11 -1.69 1.93 -90.50 -0.17 -1.86 16 4 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 5 C 0.12 1.66 5.32 -3.71 -0.02 1.64 16 6 N -0.61 -8.13 2.97 -172.50 -0.51 -8.64 16 7 C 0.52 6.92 7.70 -10.98 -0.08 6.84 16 8 O -0.55 -8.88 15.40 5.56 0.09 -8.80 16 9 C -0.13 -1.42 4.02 -27.88 -0.11 -1.53 16 10 C -0.02 -0.15 5.08 -27.88 -0.14 -0.29 16 11 C -0.02 -0.16 6.50 -82.78 -0.54 -0.70 16 12 C -0.05 -0.37 11.54 -17.04 -0.20 -0.57 16 13 N -0.30 -2.30 3.74 -68.05 -0.25 -2.55 16 14 C 0.08 0.19 11.39 59.85 0.68 0.87 16 15 N -0.09 -1.02 13.16 60.35 0.79 -0.23 16 16 N -0.26 -3.41 12.40 33.29 0.41 -3.00 16 17 C 0.11 1.33 6.37 -3.49 -0.02 1.31 16 18 C -0.15 -2.46 5.67 -26.39 -0.15 -2.61 16 19 C 0.19 3.40 2.19 -67.89 -0.15 3.26 16 20 H 0.06 1.06 8.08 -51.93 -0.42 0.64 16 21 N -0.75 -16.84 4.14 -53.38 -0.22 -17.06 16 22 C -0.24 -6.53 10.41 -15.06 -0.16 -6.69 16 23 H 0.09 2.61 8.06 -52.48 -0.42 2.18 16 24 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 25 N -0.93 -28.98 13.97 55.49 0.78 -28.20 16 26 Si 0.88 22.04 27.74 -169.99 -4.71 17.32 16 27 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 29 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.67 8.14 -51.92 -0.42 0.24 16 32 H 0.05 0.63 6.70 -51.93 -0.35 0.29 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.34 7.22 -51.93 -0.37 0.97 16 35 H 0.09 1.31 5.72 -51.93 -0.30 1.01 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.09 0.83 7.93 -51.93 -0.41 0.42 16 38 H 0.10 1.15 7.70 -51.93 -0.40 0.75 16 39 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.19 0.63 8.06 -52.49 -0.42 0.21 16 42 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.10 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.10 -0.03 8.14 -51.93 -0.42 -0.45 16 45 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.08 0.86 5.93 -51.93 -0.31 0.56 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 49 H 0.36 8.23 5.37 -40.82 -0.22 8.01 16 50 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 397.67 15.07 5.99 5.99 Total: -1.00 -35.65 397.67 -6.87 -42.52 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -8.28 Total: 6.42 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -0.94 Total: -3.78 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: 1.00 Total: -59.68 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.80 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.65 -6.87 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038003245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.588 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds