Wall clock time and date at job start Tue Mar 31 2020 18:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46803 * 2 1 4 4 H 1.09002 * 109.49934 * 55.06424 * 3 2 1 5 5 C 1.53191 * 109.49407 * 294.99709 * 3 2 1 6 6 N 1.46925 * 108.77429 * 185.41541 * 5 3 2 7 7 C 1.34784 * 120.63233 * 233.58865 * 6 5 3 8 8 O 1.21280 * 119.99536 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99771 * 180.02562 * 7 6 5 10 10 C 1.53005 * 109.46679 * 179.97438 * 9 7 6 11 11 C 1.50698 * 109.46933 * 179.97438 * 10 9 7 12 12 C 1.35361 * 126.74829 * 125.24323 * 11 10 9 13 13 N 1.35313 * 106.17197 * 180.12377 * 12 11 10 14 14 C 1.46499 * 125.86684 * 179.90335 * 13 12 11 15 15 N 1.28712 * 108.26322 * 359.64606 * 13 12 11 16 16 N 1.28634 * 110.18224 * 0.22427 * 15 13 12 17 17 C 1.46925 * 118.73873 * 53.85916 * 6 5 3 18 18 C 1.53619 * 108.54627 * 306.09711 * 17 6 5 19 19 C 1.53039 * 109.24328 * 54.85455 * 18 17 6 20 20 H 1.08994 * 109.44877 * 58.52117 * 19 18 17 21 21 N 1.46495 * 109.46162 * 178.49747 * 19 18 17 22 22 C 1.36941 * 119.99621 * 275.06136 * 21 19 18 23 23 H 1.08005 * 119.99897 * 0.02562 * 22 21 19 24 24 C 1.38815 * 120.00240 * 179.97438 * 22 21 19 25 25 N 1.31615 * 120.00192 * 180.02562 * 24 22 21 26 26 Si 1.86797 * 119.99758 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.47145 * 89.99612 * 26 24 22 28 28 H 1.48497 * 109.47045 * 209.99897 * 26 24 22 29 29 H 1.48504 * 109.47234 * 329.99681 * 26 24 22 30 30 H 1.09003 * 109.47134 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47517 * 300.00233 * 1 2 3 32 32 H 1.08995 * 109.47620 * 60.00488 * 1 2 3 33 33 H 1.09000 * 109.47212 * 239.99655 * 2 1 3 34 34 H 1.08996 * 109.47140 * 119.99301 * 2 1 3 35 35 H 1.09001 * 109.58496 * 65.63405 * 5 3 2 36 36 H 1.09003 * 109.70678 * 305.27317 * 5 3 2 37 37 H 1.08999 * 109.47544 * 60.00189 * 9 7 6 38 38 H 1.08996 * 109.46899 * 299.99602 * 9 7 6 39 39 H 1.08997 * 109.47434 * 59.99792 * 10 9 7 40 40 H 1.09003 * 109.46955 * 299.99779 * 10 9 7 41 41 H 1.07997 * 126.91163 * 0.02562 * 12 11 10 42 42 H 1.09002 * 109.47391 * 269.71876 * 14 13 12 43 43 H 1.09001 * 109.46813 * 149.71932 * 14 13 12 44 44 H 1.09004 * 109.47041 * 29.72059 * 14 13 12 45 45 H 1.09005 * 109.58797 * 65.93145 * 17 6 5 46 46 H 1.09003 * 109.58512 * 186.34975 * 17 6 5 47 47 H 1.08998 * 109.63106 * 294.86369 * 18 17 6 48 48 H 1.08997 * 109.46118 * 174.73726 * 18 17 6 49 49 H 0.96999 * 120.00643 * 95.07092 * 21 19 18 50 50 H 0.96998 * 119.99857 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6064 1.9817 0.8423 5 6 1.6350 2.1279 -1.3088 6 7 2.2413 3.4656 -1.3495 7 6 1.4814 4.5579 -1.5639 8 8 0.2851 4.4419 -1.7260 9 6 2.1184 5.9231 -1.6033 10 6 1.0428 6.9804 -1.8605 11 6 1.6797 8.3457 -1.8993 12 6 1.5882 9.2539 -2.8988 13 7 2.3161 10.3239 -2.5036 14 6 2.5106 11.5590 -3.2670 15 7 2.8036 10.0723 -1.3393 16 7 2.4426 8.9003 -0.9508 17 6 3.6928 3.5894 -1.1579 18 6 4.0739 2.8881 0.1547 19 6 3.5655 1.4450 0.1217 20 1 3.9988 0.9271 -0.7339 21 7 3.9577 0.7610 1.3563 22 6 5.1961 0.1851 1.4563 23 1 5.8838 0.2356 0.6250 24 6 5.5680 -0.4626 2.6264 25 7 6.7585 -1.0156 2.7226 26 14 4.3789 -0.5493 4.0643 27 1 3.5462 -1.7732 3.9450 28 1 5.1432 -0.5927 5.3367 29 1 3.5018 0.6490 4.0543 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 0.5495 2.2173 -1.3538 36 1 1.9887 1.5405 -2.1561 37 1 2.8582 5.9559 -2.4031 38 1 2.6055 6.1244 -0.6493 39 1 0.3027 6.9478 -1.0611 40 1 0.5561 6.7789 -2.8148 41 1 1.0450 9.1456 -3.8259 42 1 3.3966 11.4626 -3.8946 43 1 2.6417 12.3944 -2.5792 44 1 1.6382 11.7391 -3.8952 45 1 4.2130 3.1178 -1.9917 46 1 3.9656 4.6433 -1.1034 47 1 3.6218 3.4140 0.9956 48 1 5.1583 2.8893 0.2655 49 1 3.3402 0.7158 2.1030 50 1 7.0181 -1.4686 3.5401 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038003245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:44:09 Heat of formation + Delta-G solvation = 41.938016 kcal Electronic energy + Delta-G solvation = -29156.731172 eV Core-core repulsion = 25220.221852 eV Total energy + Delta-G solvation = -3936.509320 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.18827 -41.32552 -39.25525 -36.27786 -36.08362 -35.35199 -34.38360 -33.59484 -31.55136 -31.33197 -30.00274 -28.68480 -27.11812 -25.70010 -24.93381 -23.96813 -22.99592 -22.18898 -21.92856 -21.25666 -20.05621 -19.39158 -18.39106 -17.74017 -17.54556 -16.97193 -16.77460 -16.66070 -16.04753 -15.71450 -15.31025 -15.21330 -15.05230 -14.70966 -14.61882 -14.45548 -14.25944 -14.07137 -13.88577 -13.70749 -13.49531 -13.34559 -13.18541 -12.97896 -12.82198 -12.66283 -12.58207 -12.50923 -12.26971 -12.11896 -12.08973 -11.83847 -11.61760 -11.60552 -11.53907 -11.10308 -10.99865 -10.93497 -10.72772 -10.10263 -9.62985 -9.25568 -7.99641 -5.30978 0.67954 1.37915 1.39036 1.46108 1.49700 1.61587 1.65480 2.07460 2.49211 3.31018 3.33614 3.54167 3.61650 3.76312 3.80603 3.99077 4.01883 4.08612 4.17485 4.19581 4.26840 4.32561 4.36403 4.41490 4.45568 4.47433 4.62325 4.63738 4.66658 4.72125 4.79919 4.81861 4.84220 4.91276 5.01952 5.03659 5.07043 5.16291 5.17711 5.27554 5.28224 5.36281 5.47084 5.51731 5.66694 5.72544 5.81055 6.24811 6.45363 7.10738 7.18658 7.53788 7.88063 8.06162 9.21917 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015026 B = 0.002456 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1862.949896 B =11399.140446 C =12582.863108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.112 4.112 3 C -0.097 4.097 4 H 0.059 0.941 5 C 0.125 3.875 6 N -0.609 5.609 7 C 0.517 3.483 8 O -0.578 6.578 9 C -0.126 4.126 10 C -0.007 4.007 11 C -0.038 4.038 12 C -0.029 4.029 13 N -0.289 5.289 14 C 0.069 3.931 15 N -0.127 5.127 16 N -0.306 5.306 17 C 0.115 3.885 18 C -0.145 4.145 19 C 0.182 3.818 20 H 0.050 0.950 21 N -0.748 5.748 22 C -0.215 4.215 23 H 0.062 0.938 24 C -0.064 4.064 25 N -0.984 5.984 26 Si 0.946 3.054 27 H -0.279 1.279 28 H -0.300 1.300 29 H -0.259 1.259 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.066 0.934 34 H 0.049 0.951 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.105 0.895 41 H 0.235 0.765 42 H 0.107 0.893 43 H 0.103 0.897 44 H 0.132 0.868 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.361 0.639 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.251 23.114 -18.763 33.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.117 4.117 4 H 0.077 0.923 5 C 0.002 3.998 6 N -0.341 5.341 7 C 0.307 3.693 8 O -0.459 6.459 9 C -0.166 4.166 10 C -0.047 4.047 11 C -0.178 4.178 12 C -0.181 4.181 13 N -0.083 5.083 14 C -0.070 4.070 15 N -0.106 5.106 16 N -0.172 5.172 17 C -0.008 4.008 18 C -0.186 4.186 19 C 0.074 3.926 20 H 0.068 0.932 21 N -0.390 5.390 22 C -0.347 4.347 23 H 0.080 0.920 24 C -0.255 4.255 25 N -0.635 5.635 26 Si 0.774 3.226 27 H -0.206 1.206 28 H -0.227 1.227 29 H -0.184 1.184 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.068 0.932 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.131 0.869 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.123 0.877 41 H 0.251 0.749 42 H 0.126 0.874 43 H 0.121 0.879 44 H 0.150 0.850 45 H 0.103 0.897 46 H 0.122 0.878 47 H 0.069 0.931 48 H 0.081 0.919 49 H 0.194 0.806 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -13.768 23.594 -17.769 32.588 hybrid contribution -0.466 -0.783 0.760 1.187 sum -14.235 22.811 -17.009 31.816 Atomic orbital electron populations 1.21793 0.94640 1.02038 1.01954 1.21421 0.96286 0.95068 1.02233 1.21696 0.95193 0.96780 0.98060 0.92283 1.21619 0.99527 0.82024 0.96598 1.48250 1.08802 1.06704 1.70360 1.21025 0.86466 0.86851 0.74972 1.90649 1.16102 1.87202 1.51939 1.21582 0.99850 0.89762 1.05380 1.19516 0.95542 0.85056 1.04557 1.22243 1.02920 0.99773 0.92838 1.24040 1.02458 0.87618 1.03987 1.47686 1.31574 1.15898 1.13143 1.22737 1.06852 0.80952 0.96442 1.78253 1.21214 1.12405 0.98737 1.75012 1.14174 1.01753 1.26309 1.21943 0.78949 1.02580 0.97289 1.22539 1.01238 0.97515 0.97332 1.20407 0.92691 0.91171 0.88335 0.93173 1.42811 1.15001 1.66499 1.14668 1.19008 0.91481 1.25135 0.99029 0.91975 1.25374 0.98161 1.01261 1.00682 1.69860 1.21539 1.43773 1.28308 0.85542 0.78924 0.78545 0.79552 1.20571 1.22698 1.18360 0.92020 0.93323 0.91670 0.91510 0.93221 0.89121 0.90216 0.86936 0.88725 0.91112 0.87695 0.74886 0.87429 0.87858 0.84961 0.89680 0.87809 0.93062 0.91912 0.80558 0.93580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.67 71.98 0.70 -2.84 16 2 C -0.11 -3.28 5.31 30.59 0.16 -3.11 16 3 C -0.10 -2.92 1.93 -10.71 -0.02 -2.94 16 4 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 5 C 0.13 3.21 5.32 86.36 0.46 3.67 16 6 N -0.61 -15.03 2.97 -818.05 -2.43 -17.45 16 7 C 0.52 12.82 7.70 87.66 0.67 13.49 16 8 O -0.58 -17.55 15.40 -3.03 -0.05 -17.60 16 9 C -0.13 -2.42 4.02 29.85 0.12 -2.30 16 10 C -0.01 -0.13 5.08 29.85 0.15 0.02 16 11 C -0.04 -0.73 6.50 41.60 0.27 -0.45 16 12 C -0.03 -0.34 11.54 83.49 0.96 0.63 16 13 N -0.29 -3.82 3.74 -369.22 -1.38 -5.20 16 14 C 0.07 0.12 11.39 127.77 1.46 1.57 16 15 N -0.13 -2.92 13.16 37.02 0.49 -2.43 16 16 N -0.31 -7.90 12.40 -48.60 -0.60 -8.50 16 17 C 0.12 2.66 6.37 86.51 0.55 3.22 16 18 C -0.15 -4.62 5.67 30.82 0.17 -4.45 16 19 C 0.18 6.50 2.19 45.02 0.10 6.60 16 20 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 21 N -0.75 -33.88 4.14 -322.81 -1.34 -35.21 16 22 C -0.22 -11.93 10.41 84.03 0.87 -11.06 16 23 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 24 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 25 N -0.98 -62.91 13.97 21.65 0.30 -62.61 16 26 Si 0.95 46.23 27.74 68.60 1.90 48.14 16 27 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 28 H -0.30 -14.98 7.11 99.48 0.71 -14.28 16 29 H -0.26 -11.67 6.52 99.48 0.65 -11.02 16 30 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 32 H 0.06 1.41 6.70 -2.39 -0.02 1.39 16 33 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.05 1.72 7.22 -2.39 -0.02 1.70 16 35 H 0.09 2.41 5.72 -2.39 -0.01 2.39 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.11 1.70 7.93 -2.39 -0.02 1.68 16 38 H 0.09 2.02 7.70 -2.39 -0.02 2.00 16 39 H 0.07 1.52 8.10 -2.39 -0.02 1.50 16 40 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 41 H 0.23 0.35 8.06 -2.91 -0.02 0.33 16 42 H 0.11 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 44 H 0.13 -0.65 8.14 -2.38 -0.02 -0.67 16 45 H 0.08 1.76 8.14 -2.38 -0.02 1.74 16 46 H 0.10 1.97 5.93 -2.39 -0.01 1.96 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.36 16.31 5.37 -92.71 -0.50 15.81 16 50 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 Total: -1.00 -80.59 397.67 4.38 -76.21 By element: Atomic # 1 Polarization: 25.48 SS G_CDS: 0.38 Total: 25.86 kcal Atomic # 6 Polarization: -8.30 SS G_CDS: 7.10 Total: -1.21 kcal Atomic # 7 Polarization: -126.45 SS G_CDS: -4.96 Total: -131.40 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.05 Total: -17.60 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.90 Total: 48.14 kcal Total: -80.59 4.38 -76.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038003245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.152 kcal (2) G-P(sol) polarization free energy of solvation -80.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds