Wall clock time and date at job start Tue Mar 31 2020 18:32:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.53000 * 109.46798 * 240.00245 * 2 1 3 5 5 N 1.46502 * 109.47288 * 120.00097 * 2 1 3 6 6 C 1.34813 * 126.59507 * 74.99963 * 5 2 1 7 7 C 1.36588 * 106.83955 * 179.97438 * 6 5 2 8 8 C 1.47534 * 125.76947 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99642 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99737 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.20285 * 35.63874 * 11 10 8 13 13 C 1.50120 * 109.20779 * 155.00088 * 11 10 8 14 14 C 1.52519 * 105.41545 * 217.98295 * 13 11 10 15 15 C 1.46242 * 114.27692 * 270.59397 * 14 13 11 16 16 N 1.50170 * 107.53356 * 58.40698 * 15 14 13 17 17 C 1.36933 * 120.53573 * 109.56692 * 16 15 14 18 18 H 1.07999 * 120.00387 * 157.04766 * 17 16 15 19 19 C 1.38817 * 120.00031 * 336.76561 * 17 16 15 20 20 N 1.31621 * 120.00092 * 340.41436 * 19 17 16 21 21 Si 1.86802 * 120.00130 * 160.40862 * 19 17 16 22 22 H 1.48496 * 109.46904 * 90.00114 * 21 19 17 23 23 H 1.48494 * 109.47399 * 210.00397 * 21 19 17 24 24 H 1.48507 * 109.46979 * 330.00617 * 21 19 17 25 25 C 1.43426 * 118.92602 * 289.84106 * 16 15 14 26 26 C 1.54414 * 116.38993 * 91.45436 * 25 16 15 27 27 N 1.34399 * 108.46050 * 0.24478 * 7 6 5 28 28 N 1.28766 * 109.52070 * 359.58404 * 27 7 6 29 29 H 1.09005 * 109.47263 * 299.99326 * 1 2 3 30 30 H 1.09000 * 109.47695 * 59.99952 * 1 2 3 31 31 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46488 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46978 * 300.00487 * 3 2 1 34 34 H 1.08997 * 109.46853 * 59.99995 * 3 2 1 35 35 H 1.08998 * 109.46978 * 299.99738 * 4 2 1 36 36 H 1.08997 * 109.47289 * 59.99987 * 4 2 1 37 37 H 1.09004 * 109.46965 * 179.97438 * 4 2 1 38 38 H 1.08002 * 126.57871 * 359.97438 * 6 5 2 39 39 H 0.96999 * 120.00036 * 0.02562 * 10 8 7 40 40 H 1.09004 * 110.24987 * 99.01122 * 13 11 10 41 41 H 1.08997 * 110.37081 * 337.01855 * 13 11 10 42 42 H 1.08997 * 108.52679 * 149.35621 * 14 13 11 43 43 H 1.08999 * 108.40012 * 31.74375 * 14 13 11 44 44 H 1.09005 * 109.84617 * 298.90047 * 15 14 13 45 45 H 1.09000 * 109.84559 * 177.91470 * 15 14 13 46 46 H 0.96994 * 119.99966 * 180.02562 * 20 19 17 47 47 H 1.09002 * 108.16374 * 213.02778 * 25 16 15 48 48 H 1.08998 * 108.16060 * 329.60039 * 25 16 15 49 49 H 1.08999 * 109.44461 * 198.43730 * 26 25 16 50 50 H 1.08993 * 109.34575 * 78.80529 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0216 1.4105 7 6 2.5639 -2.2215 2.6483 8 6 2.7653 -3.5295 3.3005 9 8 2.4375 -4.5510 2.7283 10 7 3.3135 -3.5920 4.5302 11 6 3.5140 -4.8908 5.1776 12 1 3.7822 -5.6300 4.4228 13 6 4.6289 -4.7778 6.1765 14 6 5.3952 -6.0929 6.0792 15 6 4.9018 -7.1436 6.9688 16 7 3.4584 -7.3823 6.6301 17 6 3.0714 -8.5407 6.0110 18 1 2.0509 -8.8837 6.0963 19 6 3.9893 -9.2712 5.2688 20 7 5.0904 -8.6961 4.8337 21 14 3.6620 -11.0704 4.8878 22 1 2.9163 -11.1776 3.6081 23 1 4.9531 -11.7944 4.7705 24 1 2.8561 -11.6694 5.9819 25 6 2.4926 -6.3746 6.9602 26 6 2.1975 -5.3230 5.8687 27 7 2.8770 -1.0250 3.1741 28 7 2.5722 -0.0944 2.3379 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2496 38 1 1.6654 -2.7836 0.7333 39 1 3.5753 -2.7770 4.9865 40 1 4.2243 -4.6504 7.1806 41 1 5.2810 -3.9417 5.9243 42 1 6.4419 -5.9022 6.3159 43 1 5.3335 -6.4519 5.0518 44 1 4.9901 -6.8216 8.0064 45 1 5.4743 -8.0582 6.8143 46 1 5.7316 -9.2064 4.3148 47 1 1.5547 -6.8713 7.2088 48 1 2.8395 -5.8503 7.8506 49 1 1.7247 -4.4519 6.3225 50 1 1.5238 -5.7518 5.1269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052434088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:04 Heat of formation + Delta-G solvation = 83.687492 kcal Electronic energy + Delta-G solvation = -29837.680830 eV Core-core repulsion = 25902.981904 eV Total energy + Delta-G solvation = -3934.698926 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.33416 -39.34027 -37.79678 -37.39036 -34.53561 -32.40529 -32.00140 -31.51302 -30.92831 -29.58703 -28.05296 -27.98103 -26.12250 -24.32278 -23.81948 -23.52295 -22.26211 -20.82505 -20.18140 -19.48760 -19.00158 -17.61797 -16.62455 -16.34167 -16.19465 -15.55961 -15.00644 -14.79757 -14.69775 -14.63830 -14.31740 -13.98802 -13.66451 -13.57331 -13.15001 -13.10416 -12.97250 -12.80996 -12.44862 -12.36090 -12.27021 -12.14575 -11.92790 -11.76684 -11.60113 -11.38169 -11.25062 -11.18809 -10.70858 -10.54770 -10.45709 -10.32575 -10.15533 -9.98176 -9.71141 -9.51524 -9.41018 -9.29897 -9.26268 -8.47737 -8.26623 -6.62185 -5.69784 -3.08010 1.09070 1.80623 1.81737 3.45494 3.52363 3.52712 3.54835 3.60450 3.86867 4.09991 4.19414 4.22330 4.60129 4.71668 4.81727 4.89049 4.97930 5.06350 5.08085 5.11339 5.20334 5.26536 5.42589 5.43556 5.48209 5.56747 5.64479 5.66600 5.79155 5.89639 6.00179 6.11694 6.29568 6.36657 6.41395 6.52095 6.57737 6.80026 6.96290 6.98361 7.03216 7.11548 7.23145 7.31377 7.67326 7.81102 7.84248 8.05502 8.07492 8.52263 8.62369 9.28673 9.96265 10.48906 11.37918 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002609 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.299601 B =10729.052825 C =11445.510222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.170 3.830 3 C -0.148 4.148 4 C -0.164 4.164 5 N -0.353 5.353 6 C 0.089 3.911 7 C -0.093 4.093 8 C 0.595 3.405 9 O -0.532 6.532 10 N -0.711 5.711 11 C 0.156 3.844 12 H 0.104 0.896 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.165 3.835 16 N -0.588 5.588 17 C -0.247 4.247 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.900 5.900 21 Si 0.899 3.101 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.162 3.838 26 C -0.151 4.151 27 N -0.209 5.209 28 N -0.069 5.069 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.200 0.800 39 H 0.399 0.601 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.030 0.970 43 H 0.103 0.897 44 H 0.006 0.994 45 H 0.090 0.910 46 H 0.252 0.748 47 H 0.033 0.967 48 H 0.028 0.972 49 H 0.045 0.955 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.744 20.256 -9.771 23.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.222 4.222 5 N -0.140 5.140 6 C -0.067 4.067 7 C -0.233 4.233 8 C 0.377 3.623 9 O -0.407 6.407 10 N -0.360 5.360 11 C 0.053 3.947 12 H 0.122 0.878 13 C -0.160 4.160 14 C -0.168 4.168 15 C 0.042 3.958 16 N -0.309 5.309 17 C -0.376 4.376 18 H 0.085 0.915 19 C -0.196 4.196 20 N -0.545 5.545 21 Si 0.729 3.271 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.032 3.968 26 C -0.193 4.193 27 N -0.082 5.082 28 N -0.049 5.049 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.217 0.783 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.073 0.927 42 H 0.048 0.952 43 H 0.121 0.879 44 H 0.024 0.976 45 H 0.109 0.891 46 H 0.062 0.938 47 H 0.051 0.949 48 H 0.047 0.953 49 H 0.064 0.936 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.453 20.727 -9.602 23.485 hybrid contribution -0.387 -1.251 -0.860 1.567 sum -5.840 19.475 -10.462 22.866 Atomic orbital electron populations 1.22290 0.91915 1.03787 1.03954 1.21068 0.95168 0.94069 0.80966 1.21986 1.02555 0.92285 1.03729 1.22307 1.02756 1.01411 0.95720 1.50775 1.42458 1.05253 1.15509 1.23258 0.98523 0.86804 0.98144 1.21725 1.11971 0.93995 0.95613 1.16815 0.78228 0.85494 0.81732 1.90858 1.51138 1.34184 1.64541 1.46332 1.61927 1.10995 1.16785 1.21333 0.95244 0.82733 0.95343 0.87841 1.21365 0.96799 0.99117 0.98703 1.20934 0.96205 0.93489 1.06219 1.20171 0.85040 0.98514 0.92107 1.44293 1.02858 1.15379 1.68388 1.19187 0.96546 0.97603 1.24291 0.91545 1.24882 0.98219 0.98938 0.97529 1.69962 1.12097 1.34361 1.38073 0.86346 0.76912 0.85763 0.78057 1.21602 1.21740 1.20724 1.20254 0.93392 0.89608 0.93560 1.23232 0.96572 0.99054 1.00460 1.74625 1.13124 0.98106 1.22374 1.81903 1.16013 1.17152 0.89783 0.91243 0.89688 0.91279 0.91231 0.90212 0.90655 0.91009 0.89454 0.91099 0.78314 0.76718 0.91827 0.92678 0.95159 0.87915 0.97563 0.89140 0.93832 0.94911 0.95321 0.93582 0.92481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 8.74 37.16 0.32 -0.52 16 2 C 0.17 1.12 1.25 -131.81 -0.16 0.95 16 3 C -0.15 -0.85 8.11 37.16 0.30 -0.55 16 4 C -0.16 -0.82 8.30 37.16 0.31 -0.51 16 5 N -0.35 -3.70 3.44 -48.35 -0.17 -3.87 16 6 C 0.09 1.07 10.43 -16.84 -0.18 0.90 16 7 C -0.09 -1.41 6.99 -83.55 -0.58 -2.00 16 8 C 0.59 10.83 7.77 -12.47 -0.10 10.73 16 9 O -0.53 -11.58 16.53 5.29 0.09 -11.49 16 10 N -0.71 -12.37 4.97 -55.30 -0.27 -12.64 16 11 C 0.16 3.12 2.22 -68.39 -0.15 2.97 16 12 H 0.10 2.59 6.26 -51.93 -0.33 2.27 16 13 C -0.12 -2.25 5.33 -28.41 -0.15 -2.40 16 14 C -0.13 -2.79 5.02 -30.19 -0.15 -2.94 16 15 C 0.17 3.86 5.25 -5.20 -0.03 3.83 16 16 N -0.59 -14.58 2.61 -175.40 -0.46 -15.04 16 17 C -0.25 -6.79 9.62 -15.06 -0.14 -6.93 16 18 H 0.07 1.83 7.89 -52.49 -0.41 1.42 16 19 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 20 N -0.90 -25.32 9.43 55.49 0.52 -24.79 16 21 Si 0.90 22.01 29.60 -169.99 -5.03 16.98 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 25 C 0.16 3.47 5.13 -4.93 -0.03 3.44 16 26 C -0.15 -3.05 5.97 -25.02 -0.15 -3.20 16 27 N -0.21 -3.11 12.04 32.85 0.40 -2.72 16 28 N -0.07 -0.91 12.91 60.35 0.78 -0.14 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.07 0.50 8.06 -51.93 -0.42 0.09 16 35 H 0.07 0.35 7.44 -51.93 -0.39 -0.03 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.20 1.93 7.63 -52.49 -0.40 1.53 16 39 H 0.40 6.06 8.17 -40.82 -0.33 5.72 16 40 H 0.06 1.12 6.28 -51.93 -0.33 0.79 16 41 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.10 2.61 5.29 -51.93 -0.27 2.34 16 44 H 0.01 0.14 8.13 -51.93 -0.42 -0.29 16 45 H 0.09 2.36 6.05 -51.93 -0.31 2.04 16 46 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.03 0.70 7.99 -51.93 -0.41 0.29 16 48 H 0.03 0.56 6.89 -51.93 -0.36 0.20 16 49 H 0.05 0.82 8.12 -51.93 -0.42 0.40 16 50 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 391.53 15.07 5.90 5.90 Total: -1.00 -32.20 391.53 -7.38 -39.58 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -8.16 Total: 4.49 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -0.97 Total: 3.74 kcal Atomic # 7 Polarization: -60.00 SS G_CDS: 0.80 Total: -59.20 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.20 -7.38 -39.58 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052434088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.265 kcal (2) G-P(sol) polarization free energy of solvation -32.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds