Wall clock time and date at job start Tue Mar 31 2020 18:32:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 C 1.53000 * 109.46798 * 240.00245 * 2 1 3 5 5 N 1.46502 * 109.47288 * 120.00097 * 2 1 3 6 6 C 1.34813 * 126.59507 * 74.99963 * 5 2 1 7 7 C 1.36588 * 106.83955 * 179.97438 * 6 5 2 8 8 C 1.47534 * 125.76947 * 179.97438 * 7 6 5 9 9 O 1.21591 * 119.99642 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99804 * 179.97438 * 8 7 6 11 11 C 1.46497 * 119.99737 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.20285 * 35.63874 * 11 10 8 13 13 C 1.50120 * 109.20779 * 155.00088 * 11 10 8 14 14 C 1.52519 * 105.41545 * 217.98295 * 13 11 10 15 15 C 1.46242 * 114.27692 * 270.59397 * 14 13 11 16 16 N 1.50170 * 107.53356 * 58.40698 * 15 14 13 17 17 C 1.36933 * 120.53573 * 109.56692 * 16 15 14 18 18 H 1.07999 * 120.00387 * 157.04766 * 17 16 15 19 19 C 1.38817 * 120.00031 * 336.76561 * 17 16 15 20 20 N 1.31621 * 120.00092 * 340.41436 * 19 17 16 21 21 Si 1.86802 * 120.00130 * 160.40862 * 19 17 16 22 22 H 1.48496 * 109.46904 * 90.00114 * 21 19 17 23 23 H 1.48494 * 109.47399 * 210.00397 * 21 19 17 24 24 H 1.48507 * 109.46979 * 330.00617 * 21 19 17 25 25 C 1.43426 * 118.92602 * 289.84106 * 16 15 14 26 26 C 1.54414 * 116.38993 * 91.45436 * 25 16 15 27 27 N 1.34399 * 108.46050 * 0.24478 * 7 6 5 28 28 N 1.28766 * 109.52070 * 359.58404 * 27 7 6 29 29 H 1.09005 * 109.47263 * 299.99326 * 1 2 3 30 30 H 1.09000 * 109.47695 * 59.99952 * 1 2 3 31 31 H 1.08998 * 109.47142 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46488 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46978 * 300.00487 * 3 2 1 34 34 H 1.08997 * 109.46853 * 59.99995 * 3 2 1 35 35 H 1.08998 * 109.46978 * 299.99738 * 4 2 1 36 36 H 1.08997 * 109.47289 * 59.99987 * 4 2 1 37 37 H 1.09004 * 109.46965 * 179.97438 * 4 2 1 38 38 H 1.08002 * 126.57871 * 359.97438 * 6 5 2 39 39 H 0.96999 * 120.00036 * 0.02562 * 10 8 7 40 40 H 1.09004 * 110.24987 * 99.01122 * 13 11 10 41 41 H 1.08997 * 110.37081 * 337.01855 * 13 11 10 42 42 H 1.08997 * 108.52679 * 149.35621 * 14 13 11 43 43 H 1.08999 * 108.40012 * 31.74375 * 14 13 11 44 44 H 1.09005 * 109.84617 * 298.90047 * 15 14 13 45 45 H 1.09000 * 109.84559 * 177.91470 * 15 14 13 46 46 H 0.96994 * 119.99966 * 180.02562 * 20 19 17 47 47 H 1.09002 * 108.16374 * 213.02778 * 25 16 15 48 48 H 1.08998 * 108.16060 * 329.60039 * 25 16 15 49 49 H 1.08999 * 109.44461 * 198.43730 * 26 25 16 50 50 H 1.08993 * 109.34575 * 78.80529 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 2.0184 -0.6906 1.1962 6 6 2.0222 -2.0216 1.4105 7 6 2.5639 -2.2215 2.6483 8 6 2.7653 -3.5295 3.3005 9 8 2.4375 -4.5510 2.7283 10 7 3.3135 -3.5920 4.5302 11 6 3.5140 -4.8908 5.1776 12 1 3.7822 -5.6300 4.4228 13 6 4.6289 -4.7778 6.1765 14 6 5.3952 -6.0929 6.0792 15 6 4.9018 -7.1436 6.9688 16 7 3.4584 -7.3823 6.6301 17 6 3.0714 -8.5407 6.0110 18 1 2.0509 -8.8837 6.0963 19 6 3.9893 -9.2712 5.2688 20 7 5.0904 -8.6961 4.8337 21 14 3.6620 -11.0704 4.8878 22 1 2.9163 -11.1776 3.6081 23 1 4.9531 -11.7944 4.7705 24 1 2.8561 -11.6694 5.9819 25 6 2.4926 -6.3746 6.9602 26 6 2.1975 -5.3230 5.8687 27 7 2.8770 -1.0250 3.1741 28 7 2.5722 -0.0944 2.3379 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 3.1299 1.4425 -0.0005 33 1 1.6765 1.9564 -0.8899 34 1 1.6766 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1300 -0.7208 -1.2496 38 1 1.6654 -2.7836 0.7333 39 1 3.5753 -2.7770 4.9865 40 1 4.2243 -4.6504 7.1806 41 1 5.2810 -3.9417 5.9243 42 1 6.4419 -5.9022 6.3159 43 1 5.3335 -6.4519 5.0518 44 1 4.9901 -6.8216 8.0064 45 1 5.4743 -8.0582 6.8143 46 1 5.7316 -9.2064 4.3148 47 1 1.5547 -6.8713 7.2088 48 1 2.8395 -5.8503 7.8506 49 1 1.7247 -4.4519 6.3225 50 1 1.5238 -5.7518 5.1269 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052434088.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:03 Heat of formation + Delta-G solvation = 62.404922 kcal Electronic energy + Delta-G solvation = -29838.603711 eV Core-core repulsion = 25902.981904 eV Total energy + Delta-G solvation = -3935.621808 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.33714 -40.85114 -39.22849 -38.29702 -36.25417 -34.04951 -33.31136 -33.03177 -32.27133 -31.13304 -28.50108 -28.43519 -27.94467 -25.82054 -25.35273 -24.68633 -23.74909 -22.00483 -21.67740 -20.73850 -20.69835 -18.60939 -18.53081 -17.34152 -17.19789 -17.07125 -16.86536 -16.12812 -15.77506 -15.72225 -15.53701 -15.30889 -15.04445 -15.01189 -14.77633 -14.08320 -13.91128 -13.67308 -13.47028 -13.40396 -13.34515 -13.19898 -13.19074 -13.11141 -12.79419 -12.65566 -12.47171 -12.39076 -12.34281 -12.13534 -11.99995 -11.90952 -11.74599 -11.56139 -11.29017 -11.17830 -11.09412 -11.07014 -10.43501 -10.40042 -9.90952 -8.60892 -7.78968 -5.18890 0.11907 0.61339 1.00720 1.47809 1.49541 1.58460 2.18848 2.25079 2.57372 3.15142 3.23656 3.33969 3.63227 3.65242 3.71682 3.75647 3.91829 4.04692 4.13764 4.16249 4.35872 4.50511 4.52576 4.55438 4.58522 4.66059 4.66867 4.74328 4.77314 4.78081 4.79768 4.90345 4.92201 5.05773 5.08609 5.17350 5.21182 5.25822 5.31340 5.32219 5.43194 5.51999 5.53382 5.67396 5.70856 5.80725 6.21895 6.46259 6.50830 6.90972 7.22628 7.22910 7.96346 8.44876 9.25263 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018708 B = 0.002609 C = 0.002446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.299601 B =10729.052825 C =11445.510222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.158 3.842 3 C -0.146 4.146 4 C -0.162 4.162 5 N -0.337 5.337 6 C 0.102 3.898 7 C -0.118 4.118 8 C 0.594 3.406 9 O -0.576 6.576 10 N -0.702 5.702 11 C 0.169 3.831 12 H 0.048 0.952 13 C -0.108 4.108 14 C -0.122 4.122 15 C 0.167 3.833 16 N -0.602 5.602 17 C -0.260 4.260 18 H 0.059 0.941 19 C -0.045 4.045 20 N -0.915 5.915 21 Si 0.956 3.044 22 H -0.294 1.294 23 H -0.291 1.291 24 H -0.274 1.274 25 C 0.157 3.843 26 C -0.140 4.140 27 N -0.223 5.223 28 N -0.078 5.078 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.117 0.883 37 H 0.059 0.941 38 H 0.221 0.779 39 H 0.413 0.587 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.045 0.955 43 H 0.060 0.940 44 H 0.033 0.967 45 H 0.058 0.942 46 H 0.246 0.754 47 H 0.028 0.972 48 H 0.058 0.942 49 H 0.076 0.924 50 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 22.526 -10.226 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.077 3.923 3 C -0.204 4.204 4 C -0.220 4.220 5 N -0.123 5.123 6 C -0.056 4.056 7 C -0.258 4.258 8 C 0.379 3.621 9 O -0.455 6.455 10 N -0.352 5.352 11 C 0.065 3.935 12 H 0.066 0.934 13 C -0.146 4.146 14 C -0.161 4.161 15 C 0.044 3.956 16 N -0.324 5.324 17 C -0.390 4.390 18 H 0.076 0.924 19 C -0.240 4.240 20 N -0.561 5.561 21 Si 0.785 3.215 22 H -0.221 1.221 23 H -0.217 1.217 24 H -0.199 1.199 25 C 0.028 3.972 26 C -0.182 4.182 27 N -0.096 5.096 28 N -0.058 5.058 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.130 0.870 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.135 0.865 37 H 0.078 0.922 38 H 0.237 0.763 39 H 0.249 0.751 40 H 0.102 0.898 41 H 0.099 0.901 42 H 0.064 0.936 43 H 0.079 0.921 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.055 0.945 47 H 0.047 0.953 48 H 0.076 0.924 49 H 0.095 0.905 50 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.238 23.064 -10.038 25.916 hybrid contribution -0.199 -1.856 -0.807 2.034 sum -6.438 21.208 -10.846 24.675 Atomic orbital electron populations 1.22317 0.90440 1.03989 1.04885 1.21622 0.96262 0.94470 0.79919 1.22021 1.01833 0.91752 1.04750 1.22356 1.02113 1.01744 0.95808 1.51157 1.40704 1.04781 1.15662 1.23534 0.96961 0.87815 0.97274 1.21366 1.14602 0.92847 0.96943 1.17176 0.77166 0.86150 0.81571 1.90831 1.53043 1.36076 1.65554 1.46141 1.61678 1.10583 1.16769 1.20910 0.95694 0.82637 0.94243 0.93393 1.21273 0.96086 0.98118 0.99121 1.20744 0.97665 0.94527 1.03213 1.20127 0.84027 0.97688 0.93752 1.44457 1.03973 1.15684 1.68237 1.19371 0.96300 0.99027 1.24340 0.92364 1.25530 0.98477 1.02070 0.97970 1.70140 1.12551 1.34947 1.38502 0.85456 0.76553 0.81908 0.77549 1.22142 1.21719 1.19941 1.20382 0.92675 0.89448 0.94707 1.23100 0.96209 0.99592 0.99319 1.74589 1.13807 0.97999 1.23225 1.81819 1.16303 1.17068 0.90576 0.92427 0.86641 0.91461 0.92371 0.87030 0.91809 0.90880 0.86488 0.92159 0.76253 0.75061 0.89789 0.90120 0.93592 0.92104 0.94927 0.92404 0.94508 0.95328 0.92411 0.90512 0.95817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.74 71.98 0.63 -0.60 16 2 C 0.16 1.71 1.25 3.61 0.00 1.71 16 3 C -0.15 -1.34 8.11 71.98 0.58 -0.75 16 4 C -0.16 -1.18 8.30 71.98 0.60 -0.58 16 5 N -0.34 -6.61 3.44 -306.89 -1.06 -7.66 16 6 C 0.10 2.37 10.43 83.85 0.87 3.24 16 7 C -0.12 -3.55 6.99 40.82 0.29 -3.26 16 8 C 0.59 22.06 7.77 86.69 0.67 22.74 16 9 O -0.58 -26.16 16.53 -4.00 -0.07 -26.23 16 10 N -0.70 -24.28 4.97 -447.13 -2.22 -26.51 16 11 C 0.17 6.80 2.22 44.69 0.10 6.89 16 12 H 0.05 2.52 6.26 -2.39 -0.01 2.51 16 13 C -0.11 -3.81 5.33 29.51 0.16 -3.65 16 14 C -0.12 -5.27 5.02 28.35 0.14 -5.13 16 15 C 0.17 7.80 5.25 83.58 0.44 8.24 16 16 N -0.60 -30.11 2.61 -708.83 -1.85 -31.96 16 17 C -0.26 -14.66 9.62 84.04 0.81 -13.85 16 18 H 0.06 3.30 7.89 -2.91 -0.02 3.28 16 19 C -0.04 -2.53 4.91 84.86 0.42 -2.11 16 20 N -0.92 -53.41 9.43 21.65 0.20 -53.21 16 21 Si 0.96 46.42 29.60 68.60 2.03 48.46 16 22 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 23 H -0.29 -14.00 7.11 99.48 0.71 -13.30 16 24 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 25 C 0.16 6.60 5.13 87.43 0.45 7.05 16 26 C -0.14 -5.64 5.97 31.70 0.19 -5.45 16 27 N -0.22 -6.51 12.04 -49.99 -0.60 -7.11 16 28 N -0.08 -1.99 12.91 37.02 0.48 -1.52 16 29 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.11 0.31 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.75 8.06 -2.39 -0.02 0.73 16 35 H 0.07 0.54 7.44 -2.39 -0.02 0.52 16 36 H 0.12 0.19 8.14 -2.39 -0.02 0.17 16 37 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.22 4.02 7.63 -2.91 -0.02 4.00 16 39 H 0.41 12.00 8.17 -92.71 -0.76 11.24 16 40 H 0.08 2.66 6.28 -2.39 -0.01 2.65 16 41 H 0.08 2.44 7.86 -2.39 -0.02 2.43 16 42 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 3.20 5.29 -2.39 -0.01 3.19 16 44 H 0.03 1.34 8.13 -2.38 -0.02 1.32 16 45 H 0.06 3.08 6.05 -2.39 -0.01 3.06 16 46 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 47 H 0.03 1.22 7.99 -2.39 -0.02 1.20 16 48 H 0.06 2.10 6.89 -2.39 -0.02 2.09 16 49 H 0.08 2.60 8.12 -2.39 -0.02 2.58 16 50 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -73.87 391.53 3.45 -70.42 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.19 Total: 20.84 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 6.35 Total: 14.49 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -5.05 Total: -127.98 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: -0.07 Total: -26.23 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.46 kcal Total: -73.87 3.45 -70.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052434088.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.828 kcal (2) G-P(sol) polarization free energy of solvation -73.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds