Wall clock time and date at job start Tue Mar 31 2020 18:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 C 1.52999 * 109.47178 * 120.00021 * 2 1 3 5 5 C 1.52994 * 109.47370 * 64.99730 * 4 2 1 6 6 N 1.46496 * 109.47424 * 179.97438 * 5 4 2 7 7 C 1.34817 * 126.59421 * 124.99884 * 6 5 4 8 8 C 1.36592 * 106.84100 * 180.02562 * 7 6 5 9 9 C 1.47525 * 125.76993 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99807 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99825 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46783 * 179.97438 * 12 11 9 14 14 H 1.08999 * 112.85027 * 43.80359 * 13 12 11 15 15 C 1.53781 * 113.61092 * 175.00202 * 13 12 11 16 16 C 1.53776 * 87.08359 * 140.06290 * 15 13 12 17 17 H 1.09004 * 113.61298 * 89.19742 * 16 15 13 18 18 N 1.46494 * 113.61845 * 220.01477 * 16 15 13 19 19 C 1.36931 * 120.00458 * 203.47134 * 18 16 15 20 20 H 1.08002 * 120.00103 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00429 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47339 * 180.02562 * 23 21 19 25 25 H 1.48493 * 109.47239 * 300.00542 * 23 21 19 26 26 H 1.48504 * 109.46636 * 60.00101 * 23 21 19 27 27 C 1.53781 * 87.17270 * 334.61010 * 16 15 13 28 28 N 1.34401 * 108.45973 * 0.24326 * 8 7 6 29 29 N 1.28762 * 109.52112 * 359.58965 * 28 8 7 30 30 H 1.09001 * 109.46923 * 300.00352 * 1 2 3 31 31 H 1.09002 * 109.47248 * 59.99936 * 1 2 3 32 32 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47232 * 240.00350 * 2 1 3 34 34 H 1.09006 * 109.47102 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47603 * 299.99753 * 3 2 1 36 36 H 1.09001 * 109.47590 * 60.00056 * 3 2 1 37 37 H 1.09009 * 109.47074 * 305.00149 * 4 2 1 38 38 H 1.08997 * 109.47329 * 185.00081 * 4 2 1 39 39 H 1.09007 * 109.47083 * 59.99837 * 5 4 2 40 40 H 1.08997 * 109.47182 * 300.00441 * 5 4 2 41 41 H 1.08007 * 126.58006 * 0.06377 * 7 6 5 42 42 H 0.96998 * 120.00326 * 0.02562 * 11 9 8 43 43 H 1.09003 * 109.46841 * 59.99953 * 12 11 9 44 44 H 1.08999 * 109.46738 * 299.99970 * 12 11 9 45 45 H 1.09002 * 113.61821 * 25.51010 * 15 13 12 46 46 H 1.09004 * 113.68716 * 254.62889 * 15 13 12 47 47 H 0.97000 * 119.99459 * 23.46933 * 18 16 15 48 48 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 49 49 H 1.09000 * 113.61537 * 139.94056 * 27 16 15 50 50 H 1.09002 * 113.60904 * 270.84385 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 7 2.1241 -2.8861 2.3839 7 6 1.3874 -3.6055 3.2541 8 6 2.2449 -4.0660 4.2125 9 6 1.8753 -4.9014 5.3708 10 8 0.7182 -5.2382 5.5330 11 7 2.8203 -5.2922 6.2487 12 6 2.4533 -6.1224 7.3987 13 6 3.7023 -6.4229 8.2299 14 1 4.3363 -5.5479 8.3728 15 6 3.4071 -7.1889 9.5303 16 6 4.6823 -8.0009 9.2490 17 1 5.5841 -7.5579 9.6718 18 7 4.5503 -9.4268 9.5579 19 6 5.6651 -10.1755 9.8254 20 1 6.6418 -9.7148 9.8091 21 6 5.5400 -11.5265 10.1186 22 7 4.3497 -12.0879 10.1390 23 14 7.0609 -12.5481 10.4829 24 1 6.6600 -13.9503 10.7626 25 1 7.9699 -12.5185 9.3091 26 1 7.7618 -11.9876 11.6660 27 6 4.4730 -7.6707 7.7617 28 7 3.4813 -3.6243 3.9249 29 7 3.4480 -2.9257 2.8439 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2952 39 1 2.0698 -2.6550 0.3002 40 1 0.5490 -2.2723 1.1421 41 1 0.3234 -3.7840 3.2029 42 1 3.7433 -5.0239 6.1191 43 1 2.0173 -7.0576 7.0474 44 1 1.7266 -5.5909 8.0132 45 1 2.4937 -7.7824 9.4898 46 1 3.4712 -6.5715 10.4264 47 1 3.6731 -9.8405 9.5729 48 1 4.2622 -13.0321 10.3435 49 1 5.3970 -7.4408 7.2312 50 1 3.8515 -8.3962 7.2367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086195348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:55 Heat of formation + Delta-G solvation = 69.697239 kcal Electronic energy + Delta-G solvation = -27338.334289 eV Core-core repulsion = 23403.028700 eV Total energy + Delta-G solvation = -3935.305589 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.49973 -39.56019 -38.33139 -37.81724 -34.83879 -34.50721 -33.22277 -31.40809 -30.36183 -29.83573 -27.84354 -27.35685 -25.12960 -25.02615 -24.14096 -23.24539 -22.21096 -20.99149 -20.80054 -20.44375 -19.07678 -18.21222 -17.00626 -16.64384 -16.48766 -16.10840 -15.93009 -15.31514 -15.04674 -14.89586 -14.68922 -14.44625 -14.32888 -13.91023 -13.78986 -13.48320 -13.23798 -12.96968 -12.87625 -12.67815 -12.53779 -12.16860 -11.86560 -11.76172 -11.69592 -11.63710 -11.35368 -11.32545 -11.24323 -11.18783 -10.79132 -10.67776 -10.52082 -10.31040 -10.14064 -9.95303 -9.76532 -9.59176 -9.44800 -8.96191 -8.81838 -6.91826 -5.74292 -3.02830 0.83246 1.50427 1.64543 3.11106 3.20500 3.46422 3.50747 3.51820 3.74055 3.93181 4.03664 4.17582 4.29965 4.45748 4.52709 4.58308 4.62160 4.68557 4.90472 4.95911 5.02285 5.03347 5.05779 5.13249 5.20203 5.26667 5.29603 5.32561 5.47713 5.51307 5.55524 5.58341 5.64728 5.68298 5.87091 5.90150 5.98836 5.99922 6.14398 6.30969 6.36533 6.42420 6.50291 6.67150 6.89109 7.17727 7.41131 7.71512 7.72822 8.13991 8.44482 9.55394 10.14176 10.48492 11.48108 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.001504 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.705520 B =18617.933225 C =18919.811072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.093 4.093 3 C -0.148 4.148 4 C -0.129 4.129 5 C 0.119 3.881 6 N -0.361 5.361 7 C 0.092 3.908 8 C -0.099 4.099 9 C 0.601 3.399 10 O -0.543 6.543 11 N -0.707 5.707 12 C 0.132 3.868 13 C -0.128 4.128 14 H 0.089 0.911 15 C -0.141 4.141 16 C 0.165 3.835 17 H 0.075 0.925 18 N -0.713 5.713 19 C -0.244 4.244 20 H 0.071 0.929 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.291 1.291 25 H -0.286 1.286 26 H -0.286 1.286 27 C -0.161 4.161 28 N -0.204 5.204 29 N -0.063 5.063 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.204 0.796 42 H 0.408 0.592 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.062 0.938 47 H 0.385 0.615 48 H 0.256 0.744 49 H 0.055 0.945 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.206 27.864 -21.748 36.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.168 4.168 5 C -0.002 4.002 6 N -0.146 5.146 7 C -0.065 4.065 8 C -0.239 4.239 9 C 0.384 3.616 10 O -0.420 6.420 11 N -0.358 5.358 12 C 0.009 3.991 13 C -0.147 4.147 14 H 0.108 0.892 15 C -0.181 4.181 16 C 0.053 3.947 17 H 0.093 0.907 18 N -0.351 5.351 19 C -0.375 4.375 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.213 1.213 26 H -0.212 1.212 27 C -0.202 4.202 28 N -0.078 5.078 29 N -0.044 5.044 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.117 0.883 40 H 0.125 0.875 41 H 0.221 0.779 42 H 0.244 0.756 43 H 0.091 0.909 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.080 0.920 47 H 0.219 0.781 48 H 0.066 0.934 49 H 0.073 0.927 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.436 27.954 -21.834 36.460 hybrid contribution -0.133 -0.870 0.061 0.882 sum -8.569 27.084 -21.773 35.792 Atomic orbital electron populations 1.21970 0.94901 1.01916 1.02446 1.21067 0.96052 0.96765 0.97355 1.21826 1.01321 0.95286 1.02119 1.21983 1.03185 0.92170 0.99417 1.22213 1.00702 0.93310 0.83953 1.50563 1.07922 1.35684 1.20404 1.23391 1.00016 0.93337 0.89771 1.21535 0.89910 1.10338 1.02085 1.16760 0.85215 0.78918 0.80660 1.90813 1.18724 1.57164 1.75280 1.45851 1.11610 1.52341 1.25949 1.21509 0.97344 0.94570 0.85635 1.22678 0.96219 0.98265 0.97522 0.89245 1.23418 1.00939 0.98451 0.95242 1.21528 0.95107 0.85840 0.92233 0.90742 1.42399 1.07187 1.03204 1.82316 1.19269 0.87510 0.91081 1.39632 0.91150 1.24758 0.96594 0.96965 1.02589 1.69657 1.21096 1.11699 1.55659 0.86266 0.82304 0.79488 0.78128 1.21708 1.21272 1.21249 1.23975 0.99204 0.95482 1.01512 1.74656 1.20175 1.06002 1.06945 1.81976 0.95594 1.19313 1.07493 0.92324 0.92201 0.92511 0.90576 0.92346 0.92290 0.92499 0.90870 0.89849 0.88287 0.87541 0.77917 0.75628 0.90926 0.91460 0.90078 0.91968 0.78077 0.93449 0.92666 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.34 8.95 37.16 0.33 -0.01 16 2 C -0.09 -0.25 2.92 -90.62 -0.26 -0.51 16 3 C -0.15 -0.46 9.19 37.16 0.34 -0.12 16 4 C -0.13 -0.50 4.89 -26.73 -0.13 -0.63 16 5 C 0.12 0.45 6.29 -4.05 -0.03 0.42 16 6 N -0.36 -2.83 3.69 -61.06 -0.23 -3.05 16 7 C 0.09 0.79 11.27 -16.84 -0.19 0.60 16 8 C -0.10 -1.17 6.99 -83.55 -0.58 -1.75 16 9 C 0.60 8.22 7.82 -12.47 -0.10 8.13 16 10 O -0.54 -8.75 16.86 5.28 0.09 -8.66 16 11 N -0.71 -9.11 5.55 -61.34 -0.34 -9.45 16 12 C 0.13 1.80 5.52 -4.04 -0.02 1.78 16 13 C -0.13 -1.78 3.75 -89.71 -0.34 -2.12 16 14 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 15 C -0.14 -2.28 7.39 -25.92 -0.19 -2.47 16 16 C 0.16 3.26 4.47 -67.12 -0.30 2.96 16 17 H 0.07 1.46 8.11 -51.93 -0.42 1.04 16 18 N -0.71 -18.05 5.41 -52.64 -0.28 -18.34 16 19 C -0.24 -6.84 9.97 -15.06 -0.15 -6.99 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -28.45 13.06 55.49 0.72 -27.73 16 23 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 C -0.16 -2.76 7.45 -25.83 -0.19 -2.95 16 28 N -0.20 -2.54 12.04 32.85 0.40 -2.14 16 29 N -0.06 -0.71 13.65 60.35 0.82 0.12 16 30 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.06 0.08 6.57 -51.93 -0.34 -0.26 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 34 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 40 H 0.11 0.15 6.51 -51.93 -0.34 -0.18 16 41 H 0.20 1.13 8.06 -52.48 -0.42 0.70 16 42 H 0.41 4.80 8.16 -40.82 -0.33 4.47 16 43 H 0.07 1.10 7.86 -51.93 -0.41 0.69 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.39 10.35 7.91 -40.82 -0.32 10.03 16 48 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 49 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.08 1.48 7.91 -51.93 -0.41 1.07 16 LS Contribution 414.62 15.07 6.25 6.25 Total: -1.00 -34.09 414.62 -7.96 -42.05 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.46 Total: 7.55 kcal Atomic # 6 Polarization: -2.23 SS G_CDS: -1.91 Total: -4.13 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: 1.09 Total: -60.60 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.66 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.09 -7.96 -42.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086195348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.747 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds