Wall clock time and date at job start Tue Mar 31 2020 18:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46960 * 2 1 4 4 C 1.52999 * 109.47178 * 120.00021 * 2 1 3 5 5 C 1.52994 * 109.47370 * 64.99730 * 4 2 1 6 6 N 1.46496 * 109.47424 * 179.97438 * 5 4 2 7 7 C 1.34817 * 126.59421 * 124.99884 * 6 5 4 8 8 C 1.36592 * 106.84100 * 180.02562 * 7 6 5 9 9 C 1.47525 * 125.76993 * 179.97438 * 8 7 6 10 10 O 1.21597 * 120.00059 * 0.02562 * 9 8 7 11 11 N 1.34775 * 119.99807 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99825 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.46783 * 179.97438 * 12 11 9 14 14 H 1.08999 * 112.85027 * 43.80359 * 13 12 11 15 15 C 1.53781 * 113.61092 * 175.00202 * 13 12 11 16 16 C 1.53776 * 87.08359 * 140.06290 * 15 13 12 17 17 H 1.09004 * 113.61298 * 89.19742 * 16 15 13 18 18 N 1.46494 * 113.61845 * 220.01477 * 16 15 13 19 19 C 1.36931 * 120.00458 * 203.47134 * 18 16 15 20 20 H 1.08002 * 120.00103 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00429 * 179.97438 * 19 18 16 22 22 N 1.31624 * 119.99535 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00484 * 179.97438 * 21 19 18 24 24 H 1.48490 * 109.47339 * 180.02562 * 23 21 19 25 25 H 1.48493 * 109.47239 * 300.00542 * 23 21 19 26 26 H 1.48504 * 109.46636 * 60.00101 * 23 21 19 27 27 C 1.53781 * 87.17270 * 334.61010 * 16 15 13 28 28 N 1.34401 * 108.45973 * 0.24326 * 8 7 6 29 29 N 1.28762 * 109.52112 * 359.58965 * 28 8 7 30 30 H 1.09001 * 109.46923 * 300.00352 * 1 2 3 31 31 H 1.09002 * 109.47248 * 59.99936 * 1 2 3 32 32 H 1.08998 * 109.47229 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47232 * 240.00350 * 2 1 3 34 34 H 1.09006 * 109.47102 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47603 * 299.99753 * 3 2 1 36 36 H 1.09001 * 109.47590 * 60.00056 * 3 2 1 37 37 H 1.09009 * 109.47074 * 305.00149 * 4 2 1 38 38 H 1.08997 * 109.47329 * 185.00081 * 4 2 1 39 39 H 1.09007 * 109.47083 * 59.99837 * 5 4 2 40 40 H 1.08997 * 109.47182 * 300.00441 * 5 4 2 41 41 H 1.08007 * 126.58006 * 0.06377 * 7 6 5 42 42 H 0.96998 * 120.00326 * 0.02562 * 11 9 8 43 43 H 1.09003 * 109.46841 * 59.99953 * 12 11 9 44 44 H 1.08999 * 109.46738 * 299.99970 * 12 11 9 45 45 H 1.09002 * 113.61821 * 25.51010 * 15 13 12 46 46 H 1.09004 * 113.68716 * 254.62889 * 15 13 12 47 47 H 0.97000 * 119.99459 * 23.46933 * 18 16 15 48 48 H 0.97005 * 119.99717 * 179.97438 * 22 21 19 49 49 H 1.09000 * 113.61537 * 139.94056 * 27 16 15 50 50 H 1.09002 * 113.60904 * 270.84385 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 7 2.1241 -2.8861 2.3839 7 6 1.3874 -3.6055 3.2541 8 6 2.2449 -4.0660 4.2125 9 6 1.8753 -4.9014 5.3708 10 8 0.7182 -5.2382 5.5330 11 7 2.8203 -5.2922 6.2487 12 6 2.4533 -6.1224 7.3987 13 6 3.7023 -6.4229 8.2299 14 1 4.3363 -5.5479 8.3728 15 6 3.4071 -7.1889 9.5303 16 6 4.6823 -8.0009 9.2490 17 1 5.5841 -7.5579 9.6718 18 7 4.5503 -9.4268 9.5579 19 6 5.6651 -10.1755 9.8254 20 1 6.6418 -9.7148 9.8091 21 6 5.5400 -11.5265 10.1186 22 7 4.3497 -12.0879 10.1390 23 14 7.0609 -12.5481 10.4829 24 1 6.6600 -13.9503 10.7626 25 1 7.9699 -12.5185 9.3091 26 1 7.7618 -11.9876 11.6660 27 6 4.4730 -7.6707 7.7617 28 7 3.4813 -3.6243 3.9249 29 7 3.4480 -2.9257 2.8439 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 1.6054 -0.2617 2.1370 38 1 3.1263 -0.6443 1.2952 39 1 2.0698 -2.6550 0.3002 40 1 0.5490 -2.2723 1.1421 41 1 0.3234 -3.7840 3.2029 42 1 3.7433 -5.0239 6.1191 43 1 2.0173 -7.0576 7.0474 44 1 1.7266 -5.5909 8.0132 45 1 2.4937 -7.7824 9.4898 46 1 3.4712 -6.5715 10.4264 47 1 3.6731 -9.8405 9.5729 48 1 4.2622 -13.0321 10.3435 49 1 5.3970 -7.4408 7.2312 50 1 3.8515 -8.3962 7.2367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086195348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:54 Heat of formation + Delta-G solvation = 46.537565 kcal Electronic energy + Delta-G solvation = -27339.338568 eV Core-core repulsion = 23403.028700 eV Total energy + Delta-G solvation = -3936.309868 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.25038 -40.69658 -39.66285 -38.14662 -36.07193 -35.30660 -34.89251 -32.35279 -31.98399 -30.51122 -28.62923 -28.01996 -26.43848 -25.94126 -25.57848 -24.38894 -22.84420 -22.38122 -21.53148 -20.93524 -20.46523 -19.20886 -18.87715 -17.41612 -17.19617 -17.16210 -16.64614 -16.35698 -16.24669 -15.91355 -15.71413 -15.54177 -15.12043 -14.96283 -14.78175 -14.52719 -14.29686 -14.10393 -13.40781 -13.31689 -13.20708 -13.18953 -13.01161 -12.95862 -12.89377 -12.60321 -12.57202 -12.28920 -12.23092 -12.07570 -11.93335 -11.64013 -11.58344 -11.53767 -11.51863 -11.26751 -11.21506 -10.99763 -10.78701 -10.43151 -10.01573 -8.95620 -7.92767 -5.20895 0.14073 0.60189 1.08213 1.48108 1.51208 1.57239 2.12485 2.23022 2.58350 3.16874 3.31003 3.39177 3.70861 3.74765 3.76709 3.79662 3.91218 3.97114 3.98834 4.02946 4.23305 4.28289 4.31873 4.36422 4.43827 4.47587 4.58475 4.64773 4.73013 4.78811 4.82415 4.87464 4.96872 5.00127 5.01132 5.04881 5.07329 5.09791 5.23890 5.30097 5.35451 5.41939 5.43615 5.45552 5.49336 5.54368 5.74845 6.29561 6.41911 6.89221 7.12439 7.35176 8.13758 8.35884 9.30525 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.029663 B = 0.001504 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.705520 B =18617.933225 C =18919.811072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.088 4.088 3 C -0.151 4.151 4 C -0.123 4.123 5 C 0.110 3.890 6 N -0.347 5.347 7 C 0.109 3.891 8 C -0.125 4.125 9 C 0.601 3.399 10 O -0.572 6.572 11 N -0.704 5.704 12 C 0.139 3.861 13 C -0.098 4.098 14 H 0.117 0.883 15 C -0.132 4.132 16 C 0.142 3.858 17 H 0.078 0.922 18 N -0.729 5.729 19 C -0.245 4.245 20 H 0.077 0.923 21 C -0.078 4.078 22 N -0.971 5.971 23 Si 0.973 3.027 24 H -0.297 1.297 25 H -0.279 1.279 26 H -0.276 1.276 27 C -0.155 4.155 28 N -0.225 5.225 29 N -0.086 5.086 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.114 0.886 40 H 0.138 0.862 41 H 0.236 0.764 42 H 0.415 0.585 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.373 0.627 48 H 0.250 0.750 49 H 0.062 0.938 50 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.348 29.664 -23.051 38.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.107 4.107 3 C -0.208 4.208 4 C -0.162 4.162 5 C -0.009 4.009 6 N -0.131 5.131 7 C -0.049 4.049 8 C -0.265 4.265 9 C 0.387 3.613 10 O -0.451 6.451 11 N -0.354 5.354 12 C 0.015 3.985 13 C -0.117 4.117 14 H 0.135 0.865 15 C -0.171 4.171 16 C 0.033 3.967 17 H 0.096 0.904 18 N -0.367 5.367 19 C -0.377 4.377 20 H 0.095 0.905 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.802 3.198 24 H -0.223 1.223 25 H -0.205 1.205 26 H -0.202 1.202 27 C -0.196 4.196 28 N -0.098 5.098 29 N -0.066 5.066 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.132 0.868 40 H 0.156 0.844 41 H 0.252 0.748 42 H 0.251 0.749 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.090 0.910 46 H 0.099 0.901 47 H 0.204 0.796 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.529 29.839 -23.174 38.732 hybrid contribution -0.120 -1.290 0.366 1.346 sum -8.648 28.549 -22.808 37.550 Atomic orbital electron populations 1.21979 0.94228 1.02736 1.02305 1.21028 0.96509 0.96187 0.96936 1.21849 1.00998 0.95827 1.02128 1.21904 1.02078 0.92419 0.99750 1.22664 1.02649 0.92748 0.82812 1.50827 1.06800 1.34749 1.20763 1.23860 1.00969 0.91642 0.88413 1.21442 0.90690 1.11713 1.02686 1.16986 0.84770 0.78629 0.80966 1.90790 1.19775 1.58454 1.76114 1.45785 1.11957 1.51978 1.25653 1.21338 0.97082 0.94097 0.85949 1.22503 0.96022 0.97630 0.95532 0.86496 1.23285 0.98506 0.98038 0.97277 1.21952 0.97181 0.83497 0.94076 0.90356 1.42605 1.05890 1.05333 1.82862 1.19702 0.88583 0.91579 1.37831 0.90467 1.25574 0.99378 0.98315 1.03680 1.69822 1.23180 1.11519 1.57684 0.85218 0.78965 0.77405 0.78232 1.22284 1.20536 1.20230 1.23771 0.99747 0.96672 0.99375 1.74621 1.20840 1.06669 1.07706 1.81899 0.97487 1.19723 1.07509 0.92802 0.92069 0.91203 0.89757 0.92917 0.91796 0.92995 0.91653 0.91528 0.86842 0.84374 0.74755 0.74887 0.92726 0.90700 0.91035 0.90107 0.79559 0.94107 0.91915 0.92428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.32 8.95 71.98 0.64 0.33 16 2 C -0.09 -0.30 2.92 -10.79 -0.03 -0.33 16 3 C -0.15 -0.80 9.19 71.98 0.66 -0.13 16 4 C -0.12 -0.75 4.89 30.59 0.15 -0.60 16 5 C 0.11 0.53 6.29 86.38 0.54 1.07 16 6 N -0.35 -4.72 3.69 -347.11 -1.28 -6.00 16 7 C 0.11 1.64 11.27 83.85 0.95 2.58 16 8 C -0.13 -2.81 6.99 40.82 0.29 -2.53 16 9 C 0.60 15.96 7.82 86.69 0.68 16.63 16 10 O -0.57 -18.02 16.86 -4.02 -0.07 -18.08 16 11 N -0.70 -17.38 5.55 -466.25 -2.59 -19.97 16 12 C 0.14 3.63 5.52 86.38 0.48 4.10 16 13 C -0.10 -2.55 3.75 -10.21 -0.04 -2.59 16 14 H 0.12 2.51 8.14 -2.39 -0.02 2.49 16 15 C -0.13 -4.09 7.39 31.12 0.23 -3.86 16 16 C 0.14 5.55 4.47 45.52 0.20 5.75 16 17 H 0.08 2.98 8.11 -2.38 -0.02 2.96 16 18 N -0.73 -37.43 5.41 -320.46 -1.73 -39.17 16 19 C -0.25 -13.82 9.97 84.03 0.84 -12.98 16 20 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 21 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 22 N -0.97 -60.59 13.06 21.65 0.28 -60.31 16 23 Si 0.97 46.79 29.55 68.60 2.03 48.82 16 24 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 27 C -0.15 -5.22 7.45 31.18 0.23 -4.99 16 28 N -0.22 -5.44 12.04 -50.00 -0.60 -6.04 16 29 N -0.09 -1.83 13.65 37.02 0.51 -1.32 16 30 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.07 -0.04 6.57 -2.39 -0.02 -0.05 16 33 H 0.08 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.06 0.27 8.14 -2.39 -0.02 0.26 16 36 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 37 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 38 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 39 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 40 H 0.14 -0.16 6.51 -2.39 -0.02 -0.18 16 41 H 0.24 1.82 8.06 -2.91 -0.02 1.79 16 42 H 0.41 9.21 8.16 -92.71 -0.76 8.46 16 43 H 0.05 1.65 7.86 -2.39 -0.02 1.63 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.07 2.39 8.07 -2.39 -0.02 2.37 16 46 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.37 20.62 7.91 -92.71 -0.73 19.89 16 48 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 49 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 50 H 0.06 2.20 7.91 -2.39 -0.02 2.18 16 Total: -1.00 -75.07 414.62 2.28 -72.79 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.55 Total: 30.90 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: 6.28 Total: -1.61 kcal Atomic # 7 Polarization: -127.39 SS G_CDS: -5.42 Total: -132.81 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.07 Total: -18.08 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.03 Total: 48.82 kcal Total: -75.07 2.28 -72.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086195348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.331 kcal (2) G-P(sol) polarization free energy of solvation -75.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds