Wall clock time and date at job start Tue Mar 31 2020 18:30:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 C 1.53003 * 109.47115 * 239.99800 * 2 1 3 5 5 N 1.46496 * 109.46795 * 120.00179 * 2 1 3 6 6 C 1.34812 * 126.59720 * 75.00098 * 5 2 1 7 7 C 1.36594 * 106.84324 * 179.97438 * 6 5 2 8 8 C 1.47523 * 125.77562 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99700 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00283 * 179.73080 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27861 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.43641 * 307.53279 * 12 11 10 14 14 C 1.54888 * 110.49056 * 70.22608 * 12 11 10 15 15 C 1.54892 * 102.74922 * 156.61971 * 14 12 11 16 16 C 1.54268 * 104.19380 * 322.05426 * 15 14 12 17 17 H 1.09001 * 110.06998 * 142.91947 * 16 15 14 18 18 N 1.46503 * 110.02958 * 264.32870 * 16 15 14 19 19 C 1.36938 * 120.00006 * 272.16581 * 18 16 15 20 20 H 1.08004 * 119.99693 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00396 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99470 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47086 * 59.99996 * 23 21 19 25 25 H 1.48500 * 109.47049 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47103 * 300.00078 * 23 21 19 27 27 C 1.53871 * 106.59888 * 23.61213 * 16 15 14 28 28 N 1.34403 * 108.45820 * 0.26873 * 7 6 5 29 29 N 1.28767 * 109.51941 * 359.54384 * 28 7 6 30 30 H 1.08998 * 109.47222 * 299.99824 * 1 2 3 31 31 H 1.08999 * 109.47246 * 59.99832 * 1 2 3 32 32 H 1.09006 * 109.47357 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47542 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47169 * 300.00215 * 3 2 1 35 35 H 1.09005 * 109.47262 * 60.00106 * 3 2 1 36 36 H 1.08997 * 109.47126 * 300.00295 * 4 2 1 37 37 H 1.09008 * 109.46363 * 60.00505 * 4 2 1 38 38 H 1.09000 * 109.46695 * 179.97438 * 4 2 1 39 39 H 1.08005 * 126.58293 * 359.96806 * 6 5 2 40 40 H 0.96990 * 119.99728 * 0.27139 * 10 8 7 41 41 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 42 42 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 43 43 H 1.08997 * 110.74843 * 274.93180 * 14 12 11 44 44 H 1.08995 * 110.75458 * 38.29732 * 14 12 11 45 45 H 1.09001 * 110.47907 * 203.37627 * 15 14 12 46 46 H 1.08999 * 110.59838 * 80.78937 * 15 14 12 47 47 H 0.96989 * 120.00099 * 92.17511 * 18 16 15 48 48 H 0.96999 * 119.99735 * 180.02562 * 22 21 19 49 49 H 1.09007 * 110.03037 * 240.71130 * 27 16 15 50 50 H 1.09000 * 110.02874 * 119.28636 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1961 6 6 2.0220 -2.0216 1.4105 7 6 2.5636 -2.2216 2.6484 8 6 2.7650 -3.5294 3.3006 9 8 2.4372 -4.5511 2.7284 10 7 3.3176 -3.5923 4.5283 11 6 3.5231 -4.8915 5.1734 12 6 4.1613 -4.6829 6.5481 13 1 5.0554 -4.0653 6.4629 14 6 3.1460 -4.0401 7.5254 15 6 3.6956 -4.4569 8.9123 16 6 4.2068 -5.8968 8.6995 17 1 5.1170 -6.0597 9.2766 18 7 3.1782 -6.8590 9.1026 19 6 3.1085 -7.2821 10.4031 20 1 3.8115 -6.9060 11.1317 21 6 2.1343 -8.1942 10.7850 22 7 1.2773 -8.6521 9.8972 23 14 2.0388 -8.7708 12.5593 24 1 1.8052 -7.6036 13.4471 25 1 0.9199 -9.7359 12.7065 26 1 3.3150 -9.4306 12.9347 27 6 4.5029 -6.0405 7.1964 28 7 2.8763 -1.0250 3.1745 29 7 2.5720 -0.0945 2.3380 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.6651 -2.7836 0.7334 40 1 3.5793 -2.7774 4.9846 41 1 2.5634 -5.3948 5.2906 42 1 4.1813 -5.5034 4.5566 43 1 3.1434 -2.9551 7.4211 44 1 2.1472 -4.4469 7.3674 45 1 2.9009 -4.4404 9.6581 46 1 4.5136 -3.8022 9.2131 47 1 2.5468 -7.1965 8.4483 48 1 0.5964 -9.2892 10.1641 49 1 3.8814 -6.8263 6.7669 50 1 5.5570 -6.2724 7.0441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086713928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:39 Heat of formation + Delta-G solvation = 52.300845 kcal Electronic energy + Delta-G solvation = -28354.387434 eV Core-core repulsion = 24418.327481 eV Total energy + Delta-G solvation = -3936.059954 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.55620 -39.54241 -38.07282 -37.76317 -34.86470 -33.24703 -32.34831 -31.31300 -30.45956 -28.87928 -28.19597 -28.11867 -27.24025 -24.81452 -23.98808 -23.21343 -22.75937 -21.07110 -20.26585 -19.67417 -19.06593 -17.89459 -17.04912 -16.65100 -16.42916 -16.15804 -15.38625 -15.02650 -14.94394 -14.80381 -14.71981 -14.35890 -14.11760 -13.58973 -13.32330 -13.24238 -13.16473 -13.07316 -12.92915 -12.59145 -12.56717 -12.46237 -12.14499 -12.04524 -11.77258 -11.45960 -11.34436 -11.12714 -10.76252 -10.68076 -10.65662 -10.52311 -10.41510 -10.22030 -10.15061 -10.10010 -9.84249 -9.56630 -9.56089 -8.97255 -8.81788 -6.87243 -5.70447 -2.98404 0.87466 1.53313 1.61809 3.11903 3.22533 3.47850 3.52216 3.53239 3.69030 3.94631 3.96738 4.07562 4.44045 4.62171 4.64494 4.74643 4.77927 4.90393 4.92687 4.94996 4.98318 5.05306 5.08084 5.10357 5.19976 5.29884 5.43161 5.46716 5.61061 5.64918 5.67663 5.80063 5.83837 6.00183 6.09279 6.09818 6.17491 6.21753 6.30146 6.43850 6.47156 6.55894 6.73735 6.85114 6.99223 7.18266 7.42570 7.74733 7.76327 8.15545 8.49052 9.59390 10.19711 10.53738 11.52170 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.001798 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.565484 B =15571.123642 C =15729.865585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.169 3.831 3 C -0.149 4.149 4 C -0.163 4.163 5 N -0.352 5.352 6 C 0.093 3.907 7 C -0.100 4.100 8 C 0.601 3.399 9 O -0.541 6.541 10 N -0.709 5.709 11 C 0.126 3.874 12 C -0.103 4.103 13 H 0.075 0.925 14 C -0.113 4.113 15 C -0.146 4.146 16 C 0.174 3.826 17 H 0.048 0.952 18 N -0.720 5.720 19 C -0.238 4.238 20 H 0.069 0.931 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.121 4.121 28 N -0.207 5.207 29 N -0.063 5.063 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.201 0.799 40 H 0.408 0.592 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.073 0.927 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.831 20.744 -25.511 32.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.087 3.913 3 C -0.206 4.206 4 C -0.221 4.221 5 N -0.138 5.138 6 C -0.064 4.064 7 C -0.239 4.239 8 C 0.385 3.615 9 O -0.418 6.418 10 N -0.359 5.359 11 C 0.004 3.996 12 C -0.122 4.122 13 H 0.094 0.906 14 C -0.151 4.151 15 C -0.186 4.186 16 C 0.064 3.936 17 H 0.066 0.934 18 N -0.362 5.362 19 C -0.369 4.369 20 H 0.087 0.913 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.160 4.160 28 N -0.080 5.080 29 N -0.043 5.043 30 H 0.089 0.911 31 H 0.104 0.896 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.089 0.911 39 H 0.218 0.782 40 H 0.243 0.757 41 H 0.093 0.907 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.091 0.909 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.998 21.269 -25.076 32.941 hybrid contribution -0.582 -0.914 0.436 1.168 sum 1.415 20.355 -24.639 31.991 Atomic orbital electron populations 1.22298 0.91758 1.03815 1.04136 1.21109 0.95276 0.94139 0.80805 1.21997 1.02555 0.92200 1.03897 1.22309 1.02707 1.01356 0.95776 1.50830 1.42155 1.05228 1.15557 1.23248 0.98197 0.86955 0.98013 1.21516 1.12866 0.93815 0.95699 1.16764 0.77673 0.85761 0.81343 1.90822 1.51881 1.34475 1.64596 1.45830 1.62026 1.10907 1.17142 1.21594 1.01410 0.83742 0.92894 1.22239 0.98545 0.98618 0.92843 0.90619 1.22501 0.98613 0.98603 0.95356 1.23114 1.00250 0.98873 0.96408 1.20806 0.92300 0.88857 0.91669 0.93403 1.42536 1.35327 1.49532 1.08763 1.19221 1.11703 1.19401 0.86591 0.91295 1.24735 0.98482 1.00244 0.97620 1.69654 1.20430 1.35287 1.32798 0.86287 0.76976 0.78178 0.84861 1.21376 1.21782 1.21343 1.22464 1.00927 0.95616 0.96953 1.74651 1.13090 0.97987 1.22305 1.81956 1.15705 1.16977 0.89663 0.91139 0.89575 0.91278 0.91207 0.90090 0.90575 0.91055 0.89338 0.91109 0.78241 0.75720 0.90697 0.91371 0.92816 0.91318 0.91018 0.93321 0.78262 0.93540 0.90876 0.92051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 8.74 37.16 0.32 -0.27 16 2 C 0.17 0.80 1.25 -131.82 -0.16 0.63 16 3 C -0.15 -0.62 8.11 37.16 0.30 -0.32 16 4 C -0.16 -0.48 8.30 37.16 0.31 -0.17 16 5 N -0.35 -2.91 3.44 -48.36 -0.17 -3.08 16 6 C 0.09 0.85 10.43 -16.84 -0.18 0.67 16 7 C -0.10 -1.20 6.99 -83.55 -0.58 -1.78 16 8 C 0.60 8.34 7.82 -12.48 -0.10 8.25 16 9 O -0.54 -8.91 16.86 5.27 0.09 -8.83 16 10 N -0.71 -9.12 5.44 -61.35 -0.33 -9.46 16 11 C 0.13 1.74 4.96 -4.04 -0.02 1.72 16 12 C -0.10 -1.42 2.89 -88.96 -0.26 -1.68 16 13 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 14 C -0.11 -1.73 6.19 -24.74 -0.15 -1.89 16 15 C -0.15 -2.60 6.54 -25.07 -0.16 -2.76 16 16 C 0.17 3.45 3.55 -66.81 -0.24 3.22 16 17 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 18 N -0.72 -18.10 5.08 -52.34 -0.27 -18.37 16 19 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16 20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C -0.12 -1.97 6.14 -25.61 -0.16 -2.12 16 28 N -0.21 -2.58 12.04 32.85 0.40 -2.19 16 29 N -0.06 -0.71 12.91 60.35 0.78 0.07 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16 36 H 0.07 0.19 7.44 -51.93 -0.39 -0.20 16 37 H 0.09 0.09 8.14 -51.92 -0.42 -0.33 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.20 1.30 7.63 -52.48 -0.40 0.90 16 40 H 0.41 4.74 8.12 -40.82 -0.33 4.41 16 41 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16 45 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.38 10.27 7.52 -40.82 -0.31 9.97 16 48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 49 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16 50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 409.11 15.07 6.17 6.17 Total: -1.00 -33.93 409.11 -7.47 -41.39 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.51 Total: 8.25 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: -1.32 Total: -3.83 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 1.13 Total: -60.82 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.93 -7.47 -41.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086713928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.695 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds