Wall clock time and date at job start Tue Mar 31 2020 18:30:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52996 * 109.47177 * 2 1
4 4 C 1.53003 * 109.47115 * 239.99800 * 2 1 3
5 5 N 1.46496 * 109.46795 * 120.00179 * 2 1 3
6 6 C 1.34812 * 126.59720 * 75.00098 * 5 2 1
7 7 C 1.36594 * 106.84324 * 179.97438 * 6 5 2
8 8 C 1.47523 * 125.77562 * 179.97438 * 7 6 5
9 9 O 1.21603 * 119.99700 * 0.02562 * 8 7 6
10 10 N 1.34777 * 120.00283 * 179.73080 * 8 7 6
11 11 C 1.46504 * 119.99854 * 180.27861 * 10 8 7
12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8
13 13 H 1.08996 * 110.43641 * 307.53279 * 12 11 10
14 14 C 1.54888 * 110.49056 * 70.22608 * 12 11 10
15 15 C 1.54892 * 102.74922 * 156.61971 * 14 12 11
16 16 C 1.54268 * 104.19380 * 322.05426 * 15 14 12
17 17 H 1.09001 * 110.06998 * 142.91947 * 16 15 14
18 18 N 1.46503 * 110.02958 * 264.32870 * 16 15 14
19 19 C 1.36938 * 120.00006 * 272.16581 * 18 16 15
20 20 H 1.08004 * 119.99693 * 0.02562 * 19 18 16
21 21 C 1.38809 * 120.00396 * 180.02562 * 19 18 16
22 22 N 1.31620 * 119.99470 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00242 * 180.02562 * 21 19 18
24 24 H 1.48502 * 109.47086 * 59.99996 * 23 21 19
25 25 H 1.48500 * 109.47049 * 179.97438 * 23 21 19
26 26 H 1.48494 * 109.47103 * 300.00078 * 23 21 19
27 27 C 1.53871 * 106.59888 * 23.61213 * 16 15 14
28 28 N 1.34403 * 108.45820 * 0.26873 * 7 6 5
29 29 N 1.28767 * 109.51941 * 359.54384 * 28 7 6
30 30 H 1.08998 * 109.47222 * 299.99824 * 1 2 3
31 31 H 1.08999 * 109.47246 * 59.99832 * 1 2 3
32 32 H 1.09006 * 109.47357 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47542 * 179.97438 * 3 2 1
34 34 H 1.08999 * 109.47169 * 300.00215 * 3 2 1
35 35 H 1.09005 * 109.47262 * 60.00106 * 3 2 1
36 36 H 1.08997 * 109.47126 * 300.00295 * 4 2 1
37 37 H 1.09008 * 109.46363 * 60.00505 * 4 2 1
38 38 H 1.09000 * 109.46695 * 179.97438 * 4 2 1
39 39 H 1.08005 * 126.58293 * 359.96806 * 6 5 2
40 40 H 0.96990 * 119.99728 * 0.27139 * 10 8 7
41 41 H 1.08998 * 109.46968 * 299.99782 * 11 10 8
42 42 H 1.08997 * 109.47198 * 59.99605 * 11 10 8
43 43 H 1.08997 * 110.74843 * 274.93180 * 14 12 11
44 44 H 1.08995 * 110.75458 * 38.29732 * 14 12 11
45 45 H 1.09001 * 110.47907 * 203.37627 * 15 14 12
46 46 H 1.08999 * 110.59838 * 80.78937 * 15 14 12
47 47 H 0.96989 * 120.00099 * 92.17511 * 18 16 15
48 48 H 0.96999 * 119.99735 * 180.02562 * 22 21 19
49 49 H 1.09007 * 110.03037 * 240.71130 * 27 16 15
50 50 H 1.09000 * 110.02874 * 119.28636 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 2.0182 -0.6906 1.1961
6 6 2.0220 -2.0216 1.4105
7 6 2.5636 -2.2216 2.6484
8 6 2.7650 -3.5294 3.3006
9 8 2.4372 -4.5511 2.7284
10 7 3.3176 -3.5923 4.5283
11 6 3.5231 -4.8915 5.1734
12 6 4.1613 -4.6829 6.5481
13 1 5.0554 -4.0653 6.4629
14 6 3.1460 -4.0401 7.5254
15 6 3.6956 -4.4569 8.9123
16 6 4.2068 -5.8968 8.6995
17 1 5.1170 -6.0597 9.2766
18 7 3.1782 -6.8590 9.1026
19 6 3.1085 -7.2821 10.4031
20 1 3.8115 -6.9060 11.1317
21 6 2.1343 -8.1942 10.7850
22 7 1.2773 -8.6521 9.8972
23 14 2.0388 -8.7708 12.5593
24 1 1.8052 -7.6036 13.4471
25 1 0.9199 -9.7359 12.7065
26 1 3.3150 -9.4306 12.9347
27 6 4.5029 -6.0405 7.1964
28 7 2.8763 -1.0250 3.1745
29 7 2.5720 -0.0945 2.3380
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3634 -1.0277 -0.0005
33 1 3.1300 1.4425 0.0005
34 1 1.6766 1.9563 -0.8899
35 1 1.6767 1.9563 0.8900
36 1 1.6766 -1.7489 -1.2492
37 1 1.6767 -0.2073 -2.1392
38 1 3.1300 -0.7209 -1.2494
39 1 1.6651 -2.7836 0.7334
40 1 3.5793 -2.7774 4.9846
41 1 2.5634 -5.3948 5.2906
42 1 4.1813 -5.5034 4.5566
43 1 3.1434 -2.9551 7.4211
44 1 2.1472 -4.4469 7.3674
45 1 2.9009 -4.4404 9.6581
46 1 4.5136 -3.8022 9.2131
47 1 2.5468 -7.1965 8.4483
48 1 0.5964 -9.2892 10.1641
49 1 3.8814 -6.8263 6.7669
50 1 5.5570 -6.2724 7.0441
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001086713928.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:30:39
Heat of formation + Delta-G solvation = 52.300845 kcal
Electronic energy + Delta-G solvation = -28354.387434 eV
Core-core repulsion = 24418.327481 eV
Total energy + Delta-G solvation = -3936.059954 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-42.55620 -39.54241 -38.07282 -37.76317 -34.86470 -33.24703 -32.34831 -31.31300
-30.45956 -28.87928 -28.19597 -28.11867 -27.24025 -24.81452 -23.98808 -23.21343
-22.75937 -21.07110 -20.26585 -19.67417 -19.06593 -17.89459 -17.04912 -16.65100
-16.42916 -16.15804 -15.38625 -15.02650 -14.94394 -14.80381 -14.71981 -14.35890
-14.11760 -13.58973 -13.32330 -13.24238 -13.16473 -13.07316 -12.92915 -12.59145
-12.56717 -12.46237 -12.14499 -12.04524 -11.77258 -11.45960 -11.34436 -11.12714
-10.76252 -10.68076 -10.65662 -10.52311 -10.41510 -10.22030 -10.15061 -10.10010
-9.84249 -9.56630 -9.56089 -8.97255 -8.81788 -6.87243 -5.70447 -2.98404
0.87466 1.53313 1.61809 3.11903 3.22533 3.47850 3.52216 3.53239
3.69030 3.94631 3.96738 4.07562 4.44045 4.62171 4.64494 4.74643
4.77927 4.90393 4.92687 4.94996 4.98318 5.05306 5.08084 5.10357
5.19976 5.29884 5.43161 5.46716 5.61061 5.64918 5.67663 5.80063
5.83837 6.00183 6.09279 6.09818 6.17491 6.21753 6.30146 6.43850
6.47156 6.55894 6.73735 6.85114 6.99223 7.18266 7.42570 7.74733
7.76327 8.15545 8.49052 9.59390 10.19711 10.53738 11.52170
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.026470 B = 0.001798 C = 0.001780
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.565484 B =15571.123642 C =15729.865585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.169 3.831
3 C -0.149 4.149
4 C -0.163 4.163
5 N -0.352 5.352
6 C 0.093 3.907
7 C -0.100 4.100
8 C 0.601 3.399
9 O -0.541 6.541
10 N -0.709 5.709
11 C 0.126 3.874
12 C -0.103 4.103
13 H 0.075 0.925
14 C -0.113 4.113
15 C -0.146 4.146
16 C 0.174 3.826
17 H 0.048 0.952
18 N -0.720 5.720
19 C -0.238 4.238
20 H 0.069 0.931
21 C -0.015 4.015
22 N -0.933 5.933
23 Si 0.906 3.094
24 H -0.287 1.287
25 H -0.292 1.292
26 H -0.287 1.287
27 C -0.121 4.121
28 N -0.207 5.207
29 N -0.063 5.063
30 H 0.070 0.930
31 H 0.085 0.915
32 H 0.068 0.932
33 H 0.069 0.931
34 H 0.080 0.920
35 H 0.075 0.925
36 H 0.070 0.930
37 H 0.088 0.912
38 H 0.070 0.930
39 H 0.201 0.799
40 H 0.408 0.592
41 H 0.075 0.925
42 H 0.068 0.932
43 H 0.053 0.947
44 H 0.068 0.932
45 H 0.071 0.929
46 H 0.048 0.952
47 H 0.383 0.617
48 H 0.255 0.745
49 H 0.073 0.927
50 H 0.061 0.939
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.831 20.744 -25.511 32.931
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C 0.087 3.913
3 C -0.206 4.206
4 C -0.221 4.221
5 N -0.138 5.138
6 C -0.064 4.064
7 C -0.239 4.239
8 C 0.385 3.615
9 O -0.418 6.418
10 N -0.359 5.359
11 C 0.004 3.996
12 C -0.122 4.122
13 H 0.094 0.906
14 C -0.151 4.151
15 C -0.186 4.186
16 C 0.064 3.936
17 H 0.066 0.934
18 N -0.362 5.362
19 C -0.369 4.369
20 H 0.087 0.913
21 C -0.211 4.211
22 N -0.582 5.582
23 Si 0.737 3.263
24 H -0.214 1.214
25 H -0.218 1.218
26 H -0.213 1.213
27 C -0.160 4.160
28 N -0.080 5.080
29 N -0.043 5.043
30 H 0.089 0.911
31 H 0.104 0.896
32 H 0.087 0.913
33 H 0.088 0.912
34 H 0.099 0.901
35 H 0.094 0.906
36 H 0.089 0.911
37 H 0.107 0.893
38 H 0.089 0.911
39 H 0.218 0.782
40 H 0.243 0.757
41 H 0.093 0.907
42 H 0.086 0.914
43 H 0.072 0.928
44 H 0.087 0.913
45 H 0.090 0.910
46 H 0.067 0.933
47 H 0.217 0.783
48 H 0.065 0.935
49 H 0.091 0.909
50 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges 1.998 21.269 -25.076 32.941
hybrid contribution -0.582 -0.914 0.436 1.168
sum 1.415 20.355 -24.639 31.991
Atomic orbital electron populations
1.22298 0.91758 1.03815 1.04136 1.21109 0.95276 0.94139 0.80805
1.21997 1.02555 0.92200 1.03897 1.22309 1.02707 1.01356 0.95776
1.50830 1.42155 1.05228 1.15557 1.23248 0.98197 0.86955 0.98013
1.21516 1.12866 0.93815 0.95699 1.16764 0.77673 0.85761 0.81343
1.90822 1.51881 1.34475 1.64596 1.45830 1.62026 1.10907 1.17142
1.21594 1.01410 0.83742 0.92894 1.22239 0.98545 0.98618 0.92843
0.90619 1.22501 0.98613 0.98603 0.95356 1.23114 1.00250 0.98873
0.96408 1.20806 0.92300 0.88857 0.91669 0.93403 1.42536 1.35327
1.49532 1.08763 1.19221 1.11703 1.19401 0.86591 0.91295 1.24735
0.98482 1.00244 0.97620 1.69654 1.20430 1.35287 1.32798 0.86287
0.76976 0.78178 0.84861 1.21376 1.21782 1.21343 1.22464 1.00927
0.95616 0.96953 1.74651 1.13090 0.97987 1.22305 1.81956 1.15705
1.16977 0.89663 0.91139 0.89575 0.91278 0.91207 0.90090 0.90575
0.91055 0.89338 0.91109 0.78241 0.75720 0.90697 0.91371 0.92816
0.91318 0.91018 0.93321 0.78262 0.93540 0.90876 0.92051
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.59 8.74 37.16 0.32 -0.27 16
2 C 0.17 0.80 1.25 -131.82 -0.16 0.63 16
3 C -0.15 -0.62 8.11 37.16 0.30 -0.32 16
4 C -0.16 -0.48 8.30 37.16 0.31 -0.17 16
5 N -0.35 -2.91 3.44 -48.36 -0.17 -3.08 16
6 C 0.09 0.85 10.43 -16.84 -0.18 0.67 16
7 C -0.10 -1.20 6.99 -83.55 -0.58 -1.78 16
8 C 0.60 8.34 7.82 -12.48 -0.10 8.25 16
9 O -0.54 -8.91 16.86 5.27 0.09 -8.83 16
10 N -0.71 -9.12 5.44 -61.35 -0.33 -9.46 16
11 C 0.13 1.74 4.96 -4.04 -0.02 1.72 16
12 C -0.10 -1.42 2.89 -88.96 -0.26 -1.68 16
13 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16
14 C -0.11 -1.73 6.19 -24.74 -0.15 -1.89 16
15 C -0.15 -2.60 6.54 -25.07 -0.16 -2.76 16
16 C 0.17 3.45 3.55 -66.81 -0.24 3.22 16
17 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16
18 N -0.72 -18.10 5.08 -52.34 -0.27 -18.37 16
19 C -0.24 -6.65 9.96 -15.06 -0.15 -6.80 16
20 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16
21 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16
22 N -0.93 -28.53 13.06 55.49 0.72 -27.80 16
23 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16
24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16
25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16
26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
27 C -0.12 -1.97 6.14 -25.61 -0.16 -2.12 16
28 N -0.21 -2.58 12.04 32.85 0.40 -2.19 16
29 N -0.06 -0.71 12.91 60.35 0.78 0.07 16
30 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16
31 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16
32 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
34 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16
35 H 0.08 0.41 8.06 -51.93 -0.42 -0.01 16
36 H 0.07 0.19 7.44 -51.93 -0.39 -0.20 16
37 H 0.09 0.09 8.14 -51.92 -0.42 -0.33 16
38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16
39 H 0.20 1.30 7.63 -52.48 -0.40 0.90 16
40 H 0.41 4.74 8.12 -40.82 -0.33 4.41 16
41 H 0.07 1.16 8.02 -51.93 -0.42 0.75 16
42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16
43 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16
44 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16
45 H 0.07 1.47 8.04 -51.93 -0.42 1.06 16
46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
47 H 0.38 10.27 7.52 -40.82 -0.31 9.97 16
48 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16
49 H 0.07 1.29 7.31 -51.93 -0.38 0.91 16
50 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
LS Contribution 409.11 15.07 6.17 6.17
Total: -1.00 -33.93 409.11 -7.47 -41.39
By element:
Atomic # 1 Polarization: 16.76 SS G_CDS: -8.51 Total: 8.25 kcal
Atomic # 6 Polarization: -2.51 SS G_CDS: -1.32 Total: -3.83 kcal
Atomic # 7 Polarization: -61.96 SS G_CDS: 1.13 Total: -60.82 kcal
Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.83 kcal
Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal
Total LS contribution 6.17 Total: 6.17 kcal
Total: -33.93 -7.47 -41.39 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086713928.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.695 kcal
(2) G-P(sol) polarization free energy of solvation -33.925 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.769 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.394 kcal
(6) G-S(sol) free energy of system = (1) + (5) 52.301 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds