Wall clock time and date at job start Tue Mar 31 2020 18:30:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.52996 * 109.47177 * 2 1
4 4 C 1.53003 * 109.47115 * 239.99800 * 2 1 3
5 5 N 1.46496 * 109.46795 * 120.00179 * 2 1 3
6 6 C 1.34812 * 126.59720 * 75.00098 * 5 2 1
7 7 C 1.36594 * 106.84324 * 179.97438 * 6 5 2
8 8 C 1.47523 * 125.77562 * 179.97438 * 7 6 5
9 9 O 1.21603 * 119.99700 * 0.02562 * 8 7 6
10 10 N 1.34777 * 120.00283 * 179.73080 * 8 7 6
11 11 C 1.46504 * 119.99854 * 180.27861 * 10 8 7
12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8
13 13 H 1.08996 * 110.43641 * 307.53279 * 12 11 10
14 14 C 1.54888 * 110.49056 * 70.22608 * 12 11 10
15 15 C 1.54892 * 102.74922 * 156.61971 * 14 12 11
16 16 C 1.54268 * 104.19380 * 322.05426 * 15 14 12
17 17 H 1.09001 * 110.06998 * 142.91947 * 16 15 14
18 18 N 1.46503 * 110.02958 * 264.32870 * 16 15 14
19 19 C 1.36938 * 120.00006 * 272.16581 * 18 16 15
20 20 H 1.08004 * 119.99693 * 0.02562 * 19 18 16
21 21 C 1.38809 * 120.00396 * 180.02562 * 19 18 16
22 22 N 1.31620 * 119.99470 * 359.97438 * 21 19 18
23 23 Si 1.86799 * 120.00242 * 180.02562 * 21 19 18
24 24 H 1.48502 * 109.47086 * 59.99996 * 23 21 19
25 25 H 1.48500 * 109.47049 * 179.97438 * 23 21 19
26 26 H 1.48494 * 109.47103 * 300.00078 * 23 21 19
27 27 C 1.53871 * 106.59888 * 23.61213 * 16 15 14
28 28 N 1.34403 * 108.45820 * 0.26873 * 7 6 5
29 29 N 1.28767 * 109.51941 * 359.54384 * 28 7 6
30 30 H 1.08998 * 109.47222 * 299.99824 * 1 2 3
31 31 H 1.08999 * 109.47246 * 59.99832 * 1 2 3
32 32 H 1.09006 * 109.47357 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47542 * 179.97438 * 3 2 1
34 34 H 1.08999 * 109.47169 * 300.00215 * 3 2 1
35 35 H 1.09005 * 109.47262 * 60.00106 * 3 2 1
36 36 H 1.08997 * 109.47126 * 300.00295 * 4 2 1
37 37 H 1.09008 * 109.46363 * 60.00505 * 4 2 1
38 38 H 1.09000 * 109.46695 * 179.97438 * 4 2 1
39 39 H 1.08005 * 126.58293 * 359.96806 * 6 5 2
40 40 H 0.96990 * 119.99728 * 0.27139 * 10 8 7
41 41 H 1.08998 * 109.46968 * 299.99782 * 11 10 8
42 42 H 1.08997 * 109.47198 * 59.99605 * 11 10 8
43 43 H 1.08997 * 110.74843 * 274.93180 * 14 12 11
44 44 H 1.08995 * 110.75458 * 38.29732 * 14 12 11
45 45 H 1.09001 * 110.47907 * 203.37627 * 15 14 12
46 46 H 1.08999 * 110.59838 * 80.78937 * 15 14 12
47 47 H 0.96989 * 120.00099 * 92.17511 * 18 16 15
48 48 H 0.96999 * 119.99735 * 180.02562 * 22 21 19
49 49 H 1.09007 * 110.03037 * 240.71130 * 27 16 15
50 50 H 1.09000 * 110.02874 * 119.28636 * 27 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 -1.2492
5 7 2.0182 -0.6906 1.1961
6 6 2.0220 -2.0216 1.4105
7 6 2.5636 -2.2216 2.6484
8 6 2.7650 -3.5294 3.3006
9 8 2.4372 -4.5511 2.7284
10 7 3.3176 -3.5923 4.5283
11 6 3.5231 -4.8915 5.1734
12 6 4.1613 -4.6829 6.5481
13 1 5.0554 -4.0653 6.4629
14 6 3.1460 -4.0401 7.5254
15 6 3.6956 -4.4569 8.9123
16 6 4.2068 -5.8968 8.6995
17 1 5.1170 -6.0597 9.2766
18 7 3.1782 -6.8590 9.1026
19 6 3.1085 -7.2821 10.4031
20 1 3.8115 -6.9060 11.1317
21 6 2.1343 -8.1942 10.7850
22 7 1.2773 -8.6521 9.8972
23 14 2.0388 -8.7708 12.5593
24 1 1.8052 -7.6036 13.4471
25 1 0.9199 -9.7359 12.7065
26 1 3.3150 -9.4306 12.9347
27 6 4.5029 -6.0405 7.1964
28 7 2.8763 -1.0250 3.1745
29 7 2.5720 -0.0945 2.3380
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8899
32 1 -0.3634 -1.0277 -0.0005
33 1 3.1300 1.4425 0.0005
34 1 1.6766 1.9563 -0.8899
35 1 1.6767 1.9563 0.8900
36 1 1.6766 -1.7489 -1.2492
37 1 1.6767 -0.2073 -2.1392
38 1 3.1300 -0.7209 -1.2494
39 1 1.6651 -2.7836 0.7334
40 1 3.5793 -2.7774 4.9846
41 1 2.5634 -5.3948 5.2906
42 1 4.1813 -5.5034 4.5566
43 1 3.1434 -2.9551 7.4211
44 1 2.1472 -4.4469 7.3674
45 1 2.9009 -4.4404 9.6581
46 1 4.5136 -3.8022 9.2131
47 1 2.5468 -7.1965 8.4483
48 1 0.5964 -9.2892 10.1641
49 1 3.8814 -6.8263 6.7669
50 1 5.5570 -6.2724 7.0441
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001086713928.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:30:37
Heat of formation + Delta-G solvation = 28.826278 kcal
Electronic energy + Delta-G solvation = -28355.405368 eV
Core-core repulsion = 24418.327481 eV
Total energy + Delta-G solvation = -3937.077887 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.206 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-43.32654 -40.64919 -39.39236 -38.29774 -36.29458 -34.95641 -33.05828 -32.60736
-31.87435 -30.19427 -28.85583 -28.42977 -28.41981 -26.12320 -25.09901 -24.69834
-23.80165 -21.87190 -21.29111 -20.89968 -20.44545 -19.12236 -18.61657 -17.39943
-17.31815 -17.16192 -16.64018 -16.47862 -15.96528 -15.71452 -15.70079 -15.21012
-15.11596 -14.95753 -14.83917 -14.37670 -14.19418 -13.65532 -13.51698 -13.38475
-13.32728 -13.18973 -13.11446 -12.92614 -12.78218 -12.45965 -12.44973 -12.38931
-12.35601 -12.15993 -12.00487 -11.92634 -11.69887 -11.61690 -11.47759 -11.41102
-11.28594 -11.19883 -10.86721 -10.45038 -10.03829 -8.94042 -7.90964 -5.18271
0.13817 0.60193 1.02286 1.47161 1.50276 1.56240 2.10929 2.21843
2.58563 3.15466 3.24224 3.40588 3.64126 3.67073 3.72992 3.76669
3.82277 3.86903 3.93429 4.18744 4.22642 4.43663 4.51147 4.56775
4.57638 4.59714 4.62192 4.67323 4.70633 4.75254 4.79219 4.80549
4.81657 4.87659 4.96243 5.07372 5.10361 5.16070 5.18695 5.24511
5.26528 5.34657 5.46080 5.52434 5.53322 5.60405 5.67824 6.32406
6.41132 6.89904 7.11930 7.36991 8.17497 8.38647 9.32504
Molecular weight = 335.21amu
Principal moments of inertia in cm(-1)
A = 0.026470 B = 0.001798 C = 0.001780
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1057.565484 B =15571.123642 C =15729.865585
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.159 4.159
2 C 0.159 3.841
3 C -0.147 4.147
4 C -0.161 4.161
5 N -0.338 5.338
6 C 0.105 3.895
7 C -0.123 4.123
8 C 0.601 3.399
9 O -0.573 6.573
10 N -0.702 5.702
11 C 0.134 3.866
12 C -0.085 4.085
13 H 0.107 0.893
14 C -0.107 4.107
15 C -0.139 4.139
16 C 0.162 3.838
17 H 0.045 0.955
18 N -0.733 5.733
19 C -0.237 4.237
20 H 0.075 0.925
21 C -0.080 4.080
22 N -0.971 5.971
23 Si 0.971 3.029
24 H -0.280 1.280
25 H -0.298 1.298
26 H -0.277 1.277
27 C -0.115 4.115
28 N -0.225 5.225
29 N -0.082 5.082
30 H 0.054 0.946
31 H 0.113 0.887
32 H 0.069 0.931
33 H 0.058 0.942
34 H 0.109 0.891
35 H 0.060 0.940
36 H 0.076 0.924
37 H 0.114 0.886
38 H 0.061 0.939
39 H 0.226 0.774
40 H 0.415 0.585
41 H 0.051 0.949
42 H 0.072 0.928
43 H 0.080 0.920
44 H 0.042 0.958
45 H 0.038 0.962
46 H 0.076 0.924
47 H 0.370 0.630
48 H 0.249 0.751
49 H 0.054 0.946
50 H 0.084 0.916
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.714 22.550 -27.103 35.361
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.217 4.217
2 C 0.078 3.922
3 C -0.205 4.205
4 C -0.219 4.219
5 N -0.124 5.124
6 C -0.053 4.053
7 C -0.262 4.262
8 C 0.386 3.614
9 O -0.452 6.452
10 N -0.352 5.352
11 C 0.010 3.990
12 C -0.104 4.104
13 H 0.125 0.875
14 C -0.145 4.145
15 C -0.179 4.179
16 C 0.053 3.947
17 H 0.063 0.937
18 N -0.373 5.373
19 C -0.369 4.369
20 H 0.093 0.907
21 C -0.272 4.272
22 N -0.622 5.622
23 Si 0.801 3.199
24 H -0.206 1.206
25 H -0.224 1.224
26 H -0.204 1.204
27 C -0.153 4.153
28 N -0.098 5.098
29 N -0.062 5.062
30 H 0.073 0.927
31 H 0.132 0.868
32 H 0.088 0.912
33 H 0.077 0.923
34 H 0.128 0.872
35 H 0.079 0.921
36 H 0.095 0.905
37 H 0.133 0.867
38 H 0.080 0.920
39 H 0.243 0.757
40 H 0.252 0.748
41 H 0.069 0.931
42 H 0.091 0.909
43 H 0.098 0.902
44 H 0.061 0.939
45 H 0.056 0.944
46 H 0.095 0.905
47 H 0.202 0.798
48 H 0.058 0.942
49 H 0.072 0.928
50 H 0.102 0.898
Dipole moment (debyes) X Y Z Total
from point charges 2.930 23.158 -26.664 35.438
hybrid contribution -0.838 -1.368 0.833 1.808
sum 2.092 21.790 -25.831 33.859
Atomic orbital electron populations
1.22322 0.90617 1.04078 1.04725 1.21596 0.96111 0.94406 0.80093
1.22021 1.01879 0.91992 1.04586 1.22348 1.02182 1.01825 0.95518
1.51181 1.40600 1.05045 1.15592 1.23619 0.96628 0.87722 0.97315
1.21400 1.14911 0.93005 0.96927 1.16995 0.76978 0.86126 0.81288
1.90798 1.53319 1.35691 1.65381 1.45733 1.61721 1.10787 1.16971
1.21404 1.00288 0.84175 0.93084 1.22110 0.99077 0.97263 0.91926
0.87528 1.22434 0.97573 1.00202 0.94255 1.22958 1.00064 0.97939
0.96944 1.21133 0.90770 0.88816 0.93939 0.93651 1.42746 1.36284
1.50639 1.07672 1.19624 1.11001 1.18389 0.87876 0.90727 1.25549
0.98783 1.01262 1.01632 1.69823 1.21374 1.36371 1.34675 0.85235
0.76861 0.77585 0.80242 1.20597 1.22394 1.20356 1.22364 1.01947
0.96617 0.94407 1.74613 1.13850 0.98197 1.23156 1.81878 1.16492
1.17153 0.90647 0.92724 0.86811 0.91189 0.92254 0.87198 0.92086
0.90497 0.86734 0.91966 0.75722 0.74804 0.93050 0.90947 0.90166
0.93890 0.94351 0.90517 0.79761 0.94230 0.92765 0.89755
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -0.80 8.74 71.98 0.63 -0.17 16
2 C 0.16 1.17 1.25 3.60 0.00 1.17 16
3 C -0.15 -0.98 8.11 71.98 0.58 -0.39 16
4 C -0.16 -0.49 8.30 71.98 0.60 0.11 16
5 N -0.34 -5.19 3.44 -306.91 -1.06 -6.25 16
6 C 0.11 1.80 10.43 83.85 0.87 2.67 16
7 C -0.12 -2.88 6.99 40.82 0.29 -2.59 16
8 C 0.60 16.52 7.82 86.69 0.68 17.19 16
9 O -0.57 -18.89 16.86 -4.04 -0.07 -18.96 16
10 N -0.70 -17.51 5.44 -466.27 -2.54 -20.05 16
11 C 0.13 3.60 4.96 86.38 0.43 4.03 16
12 C -0.08 -2.18 2.89 -9.72 -0.03 -2.21 16
13 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16
14 C -0.11 -3.16 6.19 31.89 0.20 -2.97 16
15 C -0.14 -4.82 6.54 31.67 0.21 -4.61 16
16 C 0.16 6.36 3.55 45.71 0.16 6.52 16
17 H 0.05 1.80 8.09 -2.39 -0.02 1.78 16
18 N -0.73 -37.68 5.08 -319.51 -1.62 -39.30 16
19 C -0.24 -13.42 9.96 84.03 0.84 -12.58 16
20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16
21 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16
22 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16
23 Si 0.97 47.30 29.55 68.60 2.03 49.32 16
24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16
25 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16
26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16
27 C -0.11 -3.62 6.14 31.32 0.19 -3.43 16
28 N -0.22 -5.53 12.04 -49.99 -0.60 -6.13 16
29 N -0.08 -1.80 12.91 37.02 0.48 -1.32 16
30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
31 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16
32 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16
33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16
34 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16
35 H 0.06 0.60 8.06 -2.38 -0.02 0.58 16
36 H 0.08 0.18 7.44 -2.39 -0.02 0.16 16
37 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16
38 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16
39 H 0.23 2.50 7.63 -2.91 -0.02 2.48 16
40 H 0.42 9.07 8.12 -92.72 -0.75 8.31 16
41 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16
42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16
43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16
44 H 0.04 1.49 7.97 -2.39 -0.02 1.47 16
45 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16
46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16
47 H 0.37 20.66 7.52 -92.72 -0.70 19.96 16
48 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16
49 H 0.05 1.94 7.31 -2.38 -0.02 1.92 16
50 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16
Total: -1.00 -75.88 409.11 2.51 -73.37
By element:
Atomic # 1 Polarization: 32.15 SS G_CDS: -0.51 Total: 31.64 kcal
Atomic # 6 Polarization: -7.63 SS G_CDS: 6.12 Total: -1.51 kcal
Atomic # 7 Polarization: -128.80 SS G_CDS: -5.06 Total: -133.86 kcal
Atomic # 8 Polarization: -18.89 SS G_CDS: -0.07 Total: -18.96 kcal
Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal
Total: -75.88 2.51 -73.37 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001086713928.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 102.195 kcal
(2) G-P(sol) polarization free energy of solvation -75.876 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.318 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal
(6) G-S(sol) free energy of system = (1) + (5) 28.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds