Wall clock time and date at job start Tue Mar 31 2020 18:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.47177 * 2 1 4 4 C 1.53003 * 109.47115 * 239.99800 * 2 1 3 5 5 N 1.46496 * 109.46795 * 120.00179 * 2 1 3 6 6 C 1.34812 * 126.59720 * 75.00098 * 5 2 1 7 7 C 1.36594 * 106.84324 * 179.97438 * 6 5 2 8 8 C 1.47523 * 125.77562 * 179.97438 * 7 6 5 9 9 O 1.21603 * 119.99700 * 0.02562 * 8 7 6 10 10 N 1.34777 * 120.00283 * 179.73080 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27861 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.43641 * 307.53279 * 12 11 10 14 14 C 1.54888 * 110.49056 * 70.22608 * 12 11 10 15 15 C 1.54892 * 102.74922 * 156.61971 * 14 12 11 16 16 C 1.54268 * 104.19380 * 322.05426 * 15 14 12 17 17 H 1.09001 * 110.06998 * 142.91947 * 16 15 14 18 18 N 1.46503 * 110.02958 * 264.32870 * 16 15 14 19 19 C 1.36938 * 120.00006 * 272.16581 * 18 16 15 20 20 H 1.08004 * 119.99693 * 0.02562 * 19 18 16 21 21 C 1.38809 * 120.00396 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99470 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00242 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47086 * 59.99996 * 23 21 19 25 25 H 1.48500 * 109.47049 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47103 * 300.00078 * 23 21 19 27 27 C 1.53871 * 106.59888 * 23.61213 * 16 15 14 28 28 N 1.34403 * 108.45820 * 0.26873 * 7 6 5 29 29 N 1.28767 * 109.51941 * 359.54384 * 28 7 6 30 30 H 1.08998 * 109.47222 * 299.99824 * 1 2 3 31 31 H 1.08999 * 109.47246 * 59.99832 * 1 2 3 32 32 H 1.09006 * 109.47357 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47542 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47169 * 300.00215 * 3 2 1 35 35 H 1.09005 * 109.47262 * 60.00106 * 3 2 1 36 36 H 1.08997 * 109.47126 * 300.00295 * 4 2 1 37 37 H 1.09008 * 109.46363 * 60.00505 * 4 2 1 38 38 H 1.09000 * 109.46695 * 179.97438 * 4 2 1 39 39 H 1.08005 * 126.58293 * 359.96806 * 6 5 2 40 40 H 0.96990 * 119.99728 * 0.27139 * 10 8 7 41 41 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 42 42 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 43 43 H 1.08997 * 110.74843 * 274.93180 * 14 12 11 44 44 H 1.08995 * 110.75458 * 38.29732 * 14 12 11 45 45 H 1.09001 * 110.47907 * 203.37627 * 15 14 12 46 46 H 1.08999 * 110.59838 * 80.78937 * 15 14 12 47 47 H 0.96989 * 120.00099 * 92.17511 * 18 16 15 48 48 H 0.96999 * 119.99735 * 180.02562 * 22 21 19 49 49 H 1.09007 * 110.03037 * 240.71130 * 27 16 15 50 50 H 1.09000 * 110.02874 * 119.28636 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1961 6 6 2.0220 -2.0216 1.4105 7 6 2.5636 -2.2216 2.6484 8 6 2.7650 -3.5294 3.3006 9 8 2.4372 -4.5511 2.7284 10 7 3.3176 -3.5923 4.5283 11 6 3.5231 -4.8915 5.1734 12 6 4.1613 -4.6829 6.5481 13 1 5.0554 -4.0653 6.4629 14 6 3.1460 -4.0401 7.5254 15 6 3.6956 -4.4569 8.9123 16 6 4.2068 -5.8968 8.6995 17 1 5.1170 -6.0597 9.2766 18 7 3.1782 -6.8590 9.1026 19 6 3.1085 -7.2821 10.4031 20 1 3.8115 -6.9060 11.1317 21 6 2.1343 -8.1942 10.7850 22 7 1.2773 -8.6521 9.8972 23 14 2.0388 -8.7708 12.5593 24 1 1.8052 -7.6036 13.4471 25 1 0.9199 -9.7359 12.7065 26 1 3.3150 -9.4306 12.9347 27 6 4.5029 -6.0405 7.1964 28 7 2.8763 -1.0250 3.1745 29 7 2.5720 -0.0945 2.3380 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7489 -1.2492 37 1 1.6767 -0.2073 -2.1392 38 1 3.1300 -0.7209 -1.2494 39 1 1.6651 -2.7836 0.7334 40 1 3.5793 -2.7774 4.9846 41 1 2.5634 -5.3948 5.2906 42 1 4.1813 -5.5034 4.5566 43 1 3.1434 -2.9551 7.4211 44 1 2.1472 -4.4469 7.3674 45 1 2.9009 -4.4404 9.6581 46 1 4.5136 -3.8022 9.2131 47 1 2.5468 -7.1965 8.4483 48 1 0.5964 -9.2892 10.1641 49 1 3.8814 -6.8263 6.7669 50 1 5.5570 -6.2724 7.0441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086713928.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:37 Heat of formation + Delta-G solvation = 28.826278 kcal Electronic energy + Delta-G solvation = -28355.405368 eV Core-core repulsion = 24418.327481 eV Total energy + Delta-G solvation = -3937.077887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.32654 -40.64919 -39.39236 -38.29774 -36.29458 -34.95641 -33.05828 -32.60736 -31.87435 -30.19427 -28.85583 -28.42977 -28.41981 -26.12320 -25.09901 -24.69834 -23.80165 -21.87190 -21.29111 -20.89968 -20.44545 -19.12236 -18.61657 -17.39943 -17.31815 -17.16192 -16.64018 -16.47862 -15.96528 -15.71452 -15.70079 -15.21012 -15.11596 -14.95753 -14.83917 -14.37670 -14.19418 -13.65532 -13.51698 -13.38475 -13.32728 -13.18973 -13.11446 -12.92614 -12.78218 -12.45965 -12.44973 -12.38931 -12.35601 -12.15993 -12.00487 -11.92634 -11.69887 -11.61690 -11.47759 -11.41102 -11.28594 -11.19883 -10.86721 -10.45038 -10.03829 -8.94042 -7.90964 -5.18271 0.13817 0.60193 1.02286 1.47161 1.50276 1.56240 2.10929 2.21843 2.58563 3.15466 3.24224 3.40588 3.64126 3.67073 3.72992 3.76669 3.82277 3.86903 3.93429 4.18744 4.22642 4.43663 4.51147 4.56775 4.57638 4.59714 4.62192 4.67323 4.70633 4.75254 4.79219 4.80549 4.81657 4.87659 4.96243 5.07372 5.10361 5.16070 5.18695 5.24511 5.26528 5.34657 5.46080 5.52434 5.53322 5.60405 5.67824 6.32406 6.41132 6.89904 7.11930 7.36991 8.17497 8.38647 9.32504 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026470 B = 0.001798 C = 0.001780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.565484 B =15571.123642 C =15729.865585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.159 3.841 3 C -0.147 4.147 4 C -0.161 4.161 5 N -0.338 5.338 6 C 0.105 3.895 7 C -0.123 4.123 8 C 0.601 3.399 9 O -0.573 6.573 10 N -0.702 5.702 11 C 0.134 3.866 12 C -0.085 4.085 13 H 0.107 0.893 14 C -0.107 4.107 15 C -0.139 4.139 16 C 0.162 3.838 17 H 0.045 0.955 18 N -0.733 5.733 19 C -0.237 4.237 20 H 0.075 0.925 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.280 1.280 25 H -0.298 1.298 26 H -0.277 1.277 27 C -0.115 4.115 28 N -0.225 5.225 29 N -0.082 5.082 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.114 0.886 38 H 0.061 0.939 39 H 0.226 0.774 40 H 0.415 0.585 41 H 0.051 0.949 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.038 0.962 46 H 0.076 0.924 47 H 0.370 0.630 48 H 0.249 0.751 49 H 0.054 0.946 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 22.550 -27.103 35.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.078 3.922 3 C -0.205 4.205 4 C -0.219 4.219 5 N -0.124 5.124 6 C -0.053 4.053 7 C -0.262 4.262 8 C 0.386 3.614 9 O -0.452 6.452 10 N -0.352 5.352 11 C 0.010 3.990 12 C -0.104 4.104 13 H 0.125 0.875 14 C -0.145 4.145 15 C -0.179 4.179 16 C 0.053 3.947 17 H 0.063 0.937 18 N -0.373 5.373 19 C -0.369 4.369 20 H 0.093 0.907 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.801 3.199 24 H -0.206 1.206 25 H -0.224 1.224 26 H -0.204 1.204 27 C -0.153 4.153 28 N -0.098 5.098 29 N -0.062 5.062 30 H 0.073 0.927 31 H 0.132 0.868 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.095 0.905 37 H 0.133 0.867 38 H 0.080 0.920 39 H 0.243 0.757 40 H 0.252 0.748 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.098 0.902 44 H 0.061 0.939 45 H 0.056 0.944 46 H 0.095 0.905 47 H 0.202 0.798 48 H 0.058 0.942 49 H 0.072 0.928 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.930 23.158 -26.664 35.438 hybrid contribution -0.838 -1.368 0.833 1.808 sum 2.092 21.790 -25.831 33.859 Atomic orbital electron populations 1.22322 0.90617 1.04078 1.04725 1.21596 0.96111 0.94406 0.80093 1.22021 1.01879 0.91992 1.04586 1.22348 1.02182 1.01825 0.95518 1.51181 1.40600 1.05045 1.15592 1.23619 0.96628 0.87722 0.97315 1.21400 1.14911 0.93005 0.96927 1.16995 0.76978 0.86126 0.81288 1.90798 1.53319 1.35691 1.65381 1.45733 1.61721 1.10787 1.16971 1.21404 1.00288 0.84175 0.93084 1.22110 0.99077 0.97263 0.91926 0.87528 1.22434 0.97573 1.00202 0.94255 1.22958 1.00064 0.97939 0.96944 1.21133 0.90770 0.88816 0.93939 0.93651 1.42746 1.36284 1.50639 1.07672 1.19624 1.11001 1.18389 0.87876 0.90727 1.25549 0.98783 1.01262 1.01632 1.69823 1.21374 1.36371 1.34675 0.85235 0.76861 0.77585 0.80242 1.20597 1.22394 1.20356 1.22364 1.01947 0.96617 0.94407 1.74613 1.13850 0.98197 1.23156 1.81878 1.16492 1.17153 0.90647 0.92724 0.86811 0.91189 0.92254 0.87198 0.92086 0.90497 0.86734 0.91966 0.75722 0.74804 0.93050 0.90947 0.90166 0.93890 0.94351 0.90517 0.79761 0.94230 0.92765 0.89755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 8.74 71.98 0.63 -0.17 16 2 C 0.16 1.17 1.25 3.60 0.00 1.17 16 3 C -0.15 -0.98 8.11 71.98 0.58 -0.39 16 4 C -0.16 -0.49 8.30 71.98 0.60 0.11 16 5 N -0.34 -5.19 3.44 -306.91 -1.06 -6.25 16 6 C 0.11 1.80 10.43 83.85 0.87 2.67 16 7 C -0.12 -2.88 6.99 40.82 0.29 -2.59 16 8 C 0.60 16.52 7.82 86.69 0.68 17.19 16 9 O -0.57 -18.89 16.86 -4.04 -0.07 -18.96 16 10 N -0.70 -17.51 5.44 -466.27 -2.54 -20.05 16 11 C 0.13 3.60 4.96 86.38 0.43 4.03 16 12 C -0.08 -2.18 2.89 -9.72 -0.03 -2.21 16 13 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 14 C -0.11 -3.16 6.19 31.89 0.20 -2.97 16 15 C -0.14 -4.82 6.54 31.67 0.21 -4.61 16 16 C 0.16 6.36 3.55 45.71 0.16 6.52 16 17 H 0.05 1.80 8.09 -2.39 -0.02 1.78 16 18 N -0.73 -37.68 5.08 -319.51 -1.62 -39.30 16 19 C -0.24 -13.42 9.96 84.03 0.84 -12.58 16 20 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 21 C -0.08 -4.73 5.50 84.86 0.47 -4.26 16 22 N -0.97 -61.10 13.06 21.65 0.28 -60.82 16 23 Si 0.97 47.30 29.55 68.60 2.03 49.32 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 25 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 26 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 27 C -0.11 -3.62 6.14 31.32 0.19 -3.43 16 28 N -0.22 -5.53 12.04 -49.99 -0.60 -6.13 16 29 N -0.08 -1.80 12.91 37.02 0.48 -1.32 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.11 -0.04 8.14 -2.39 -0.02 -0.06 16 32 H 0.07 0.36 8.14 -2.38 -0.02 0.34 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 35 H 0.06 0.60 8.06 -2.38 -0.02 0.58 16 36 H 0.08 0.18 7.44 -2.39 -0.02 0.16 16 37 H 0.11 -0.21 8.14 -2.38 -0.02 -0.23 16 38 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.23 2.50 7.63 -2.91 -0.02 2.48 16 40 H 0.42 9.07 8.12 -92.72 -0.75 8.31 16 41 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 42 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.04 1.49 7.97 -2.39 -0.02 1.47 16 45 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.37 20.66 7.52 -92.72 -0.70 19.96 16 48 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 49 H 0.05 1.94 7.31 -2.38 -0.02 1.92 16 50 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -75.88 409.11 2.51 -73.37 By element: Atomic # 1 Polarization: 32.15 SS G_CDS: -0.51 Total: 31.64 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: 6.12 Total: -1.51 kcal Atomic # 7 Polarization: -128.80 SS G_CDS: -5.06 Total: -133.86 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -0.07 Total: -18.96 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.32 kcal Total: -75.88 2.51 -73.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086713928.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.195 kcal (2) G-P(sol) polarization free energy of solvation -75.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds