Wall clock time and date at job start Tue Mar 31 2020 18:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47175 * 2 1 4 4 C 1.52995 * 109.46834 * 240.00104 * 2 1 3 5 5 N 1.46502 * 109.46738 * 120.00356 * 2 1 3 6 6 C 1.34583 * 125.75233 * 75.00357 * 5 2 1 7 7 N 1.30871 * 107.62411 * 180.25857 * 6 5 2 8 8 C 1.34552 * 107.26834 * 359.64035 * 7 6 5 9 9 C 1.47871 * 126.04508 * 180.11807 * 8 7 6 10 10 O 1.21550 * 120.00043 * 180.27975 * 9 8 7 11 11 N 1.34778 * 120.00162 * 0.28622 * 9 8 7 12 12 C 1.46503 * 120.00191 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47199 * 180.02562 * 12 11 9 14 14 H 1.09004 * 110.43182 * 307.54017 * 13 12 11 15 15 C 1.54885 * 110.49235 * 70.22006 * 13 12 11 16 16 C 1.54887 * 102.75020 * 156.62003 * 15 13 12 17 17 C 1.54265 * 104.19563 * 322.06096 * 16 15 13 18 18 H 1.08999 * 110.06835 * 142.91711 * 17 16 15 19 19 N 1.46501 * 110.03141 * 264.32355 * 17 16 15 20 20 C 1.36934 * 120.00072 * 272.16542 * 19 17 16 21 21 H 1.08009 * 119.99993 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00274 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99875 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00258 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47251 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47317 * 120.00206 * 24 22 20 27 27 H 1.48506 * 109.47114 * 240.00223 * 24 22 20 28 28 C 1.53876 * 106.59750 * 23.61076 * 17 16 15 29 29 N 1.28854 * 125.74457 * 255.03577 * 5 2 1 30 30 H 1.09003 * 109.47025 * 300.00017 * 1 2 3 31 31 H 1.08997 * 109.47231 * 59.99580 * 1 2 3 32 32 H 1.08996 * 109.47109 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47018 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47384 * 300.00326 * 3 2 1 35 35 H 1.09003 * 109.47158 * 60.00064 * 3 2 1 36 36 H 1.09010 * 109.47312 * 299.99675 * 4 2 1 37 37 H 1.09000 * 109.47681 * 60.00167 * 4 2 1 38 38 H 1.09002 * 109.46999 * 180.02562 * 4 2 1 39 39 H 1.08002 * 126.18341 * 359.97438 * 6 5 2 40 40 H 0.97004 * 119.99592 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.46451 * 299.99686 * 12 11 9 42 42 H 1.08999 * 109.46866 * 59.99506 * 12 11 9 43 43 H 1.09006 * 110.75670 * 274.94144 * 15 13 12 44 44 H 1.09006 * 110.75459 * 38.30398 * 15 13 12 45 45 H 1.08999 * 110.48418 * 203.38077 * 16 15 13 46 46 H 1.09000 * 110.59874 * 80.79851 * 16 15 13 47 47 H 0.97002 * 119.99808 * 92.17122 * 19 17 16 48 48 H 0.97002 * 120.00028 * 179.97438 * 23 22 20 49 49 H 1.09004 * 110.02772 * 240.71150 * 28 17 16 50 50 H 1.09000 * 110.02998 * 119.28587 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0139 -2.0222 1.3922 7 7 2.5226 -2.2500 2.5763 8 6 2.8483 -1.0574 3.1073 9 6 3.4579 -0.8338 4.4358 10 8 3.7031 0.2966 4.8095 11 7 3.7418 -1.8833 5.2324 12 6 4.3462 -1.6617 6.5484 13 6 4.5644 -3.0076 7.2425 14 1 3.6399 -3.5850 7.2523 15 6 5.6953 -3.8016 6.5426 16 6 6.1808 -4.7602 7.6581 17 6 6.1118 -3.9103 8.9437 18 1 5.7874 -4.5263 9.7824 19 7 7.4242 -3.3251 9.2295 20 6 8.3386 -4.0240 9.9714 21 1 8.0925 -5.0068 10.3457 22 6 9.5822 -3.4698 10.2417 23 7 9.8823 -2.2724 9.7853 24 14 10.8299 -4.4235 11.2533 25 1 10.2518 -5.7341 11.6448 26 1 12.0567 -4.6443 10.4461 27 1 11.1728 -3.6499 12.4737 28 6 5.0840 -2.7960 8.6794 29 7 2.5238 -0.1256 2.2381 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2490 39 1 1.6514 -2.7674 0.6997 40 1 3.5465 -2.7854 4.9339 41 1 5.3043 -1.1561 6.4276 42 1 3.6829 -1.0437 7.1534 43 1 5.3049 -4.3629 5.6937 44 1 6.4987 -3.1348 6.2295 45 1 7.2050 -5.0803 7.4669 46 1 5.5204 -5.6239 7.7358 47 1 7.6453 -2.4426 8.8931 48 1 10.7513 -1.8849 9.9745 49 1 5.5617 -1.8199 8.7638 50 1 4.2604 -2.8718 9.3893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086801740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:07 Heat of formation + Delta-G solvation = 51.689826 kcal Electronic energy + Delta-G solvation = -28432.092213 eV Core-core repulsion = 24496.005763 eV Total energy + Delta-G solvation = -3936.086449 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.78583 -39.58829 -38.08283 -37.68527 -34.87735 -33.33085 -32.80582 -31.38210 -30.55598 -28.94106 -28.21290 -28.08345 -27.33245 -25.30803 -23.54008 -23.29290 -22.99425 -20.66315 -20.50113 -19.80437 -19.11352 -18.03449 -17.05354 -16.88917 -16.82691 -16.23509 -15.45900 -15.21006 -14.83714 -14.74971 -14.66068 -14.39643 -14.06622 -13.58145 -13.39782 -13.27030 -13.16020 -13.07141 -12.95584 -12.57236 -12.48674 -12.38324 -12.13680 -11.96571 -11.62926 -11.35192 -11.13359 -10.78140 -10.70745 -10.69484 -10.65392 -10.51055 -10.41041 -10.25419 -10.15476 -10.08438 -9.83146 -9.80785 -9.56766 -8.99400 -8.82676 -6.86960 -5.70457 -2.98426 1.21665 1.76640 1.86780 2.98510 3.32029 3.47044 3.52569 3.54913 3.70382 3.89202 3.97350 4.08312 4.36050 4.57496 4.64525 4.73065 4.85899 4.91192 4.94489 4.99581 5.05290 5.05389 5.14496 5.19887 5.26291 5.43409 5.61197 5.62879 5.67065 5.75373 5.80181 5.83867 5.99869 6.05311 6.09555 6.17196 6.20779 6.23350 6.29865 6.43870 6.46196 6.55754 6.73650 6.84908 6.99235 7.18091 7.40939 7.77324 7.81836 8.17167 8.48906 9.59428 10.19828 10.53733 11.52266 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.001812 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.563528 B =15448.587294 C =15619.834532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.166 3.834 3 C -0.150 4.150 4 C -0.161 4.161 5 N -0.293 5.293 6 C 0.188 3.812 7 N -0.484 5.484 8 C 0.141 3.859 9 C 0.612 3.388 10 O -0.520 6.520 11 N -0.704 5.704 12 C 0.127 3.873 13 C -0.103 4.103 14 H 0.076 0.924 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.174 3.826 18 H 0.048 0.952 19 N -0.721 5.721 20 C -0.237 4.237 21 H 0.070 0.930 22 C -0.016 4.016 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.292 1.292 28 C -0.121 4.121 29 N -0.247 5.247 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.221 0.779 40 H 0.409 0.591 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.048 0.952 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.073 0.927 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.110 1.837 -25.315 34.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.085 3.915 3 C -0.207 4.207 4 C -0.219 4.219 5 N -0.090 5.090 6 C -0.107 4.107 7 N -0.209 5.209 8 C -0.139 4.139 9 C 0.393 3.607 10 O -0.393 6.393 11 N -0.356 5.356 12 C 0.005 3.995 13 C -0.122 4.122 14 H 0.094 0.906 15 C -0.151 4.151 16 C -0.186 4.186 17 C 0.064 3.936 18 H 0.066 0.934 19 N -0.362 5.362 20 C -0.368 4.368 21 H 0.088 0.912 22 C -0.212 4.212 23 N -0.581 5.581 24 Si 0.736 3.264 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C -0.160 4.160 29 N -0.085 5.085 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.107 0.893 38 H 0.090 0.910 39 H 0.238 0.762 40 H 0.245 0.755 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.067 0.933 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.092 0.908 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -22.667 2.928 -24.593 33.573 hybrid contribution 0.592 -0.870 -0.128 1.060 sum -22.074 2.057 -24.720 33.205 Atomic orbital electron populations 1.22267 0.91681 1.03641 1.04197 1.21180 0.95326 0.94418 0.80626 1.22005 1.02706 0.92168 1.03835 1.22269 1.02818 1.01138 0.95638 1.47800 1.41490 1.06257 1.13441 1.26301 1.01749 0.86481 0.96175 1.71281 1.16547 1.25956 1.07111 1.23809 1.06294 0.85663 0.98142 1.16286 0.78293 0.85087 0.81042 1.90842 1.52593 1.22541 1.73315 1.45731 1.62559 1.09363 1.17945 1.21627 0.98598 0.97905 0.81419 1.22233 0.99141 0.94467 0.96327 0.90565 1.22505 0.97119 0.98151 0.97304 1.23111 1.01072 0.97328 0.97114 1.20806 0.86345 0.92210 0.94267 0.93384 1.42558 1.10985 1.19785 1.62867 1.19310 0.93839 0.99235 1.24407 0.91176 1.24740 0.97976 0.96900 1.01535 1.69675 1.22221 1.15862 1.50342 0.86145 0.81659 0.78922 0.79642 1.20611 1.21994 1.21967 1.22466 0.98811 1.01041 0.93671 1.74302 1.13310 1.25448 0.95446 0.91208 0.89526 0.91322 0.91173 0.90260 0.90477 0.91095 0.89253 0.91049 0.76249 0.75524 0.90599 0.91248 0.92802 0.91298 0.91016 0.93319 0.78250 0.93630 0.90844 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.51 8.72 37.16 0.32 -0.18 16 2 C 0.17 0.81 1.23 -131.82 -0.16 0.65 16 3 C -0.15 -0.82 8.04 37.15 0.30 -0.52 16 4 C -0.16 -0.39 8.28 37.16 0.31 -0.08 16 5 N -0.29 -2.53 3.17 -49.84 -0.16 -2.69 16 6 C 0.19 1.50 11.71 -90.48 -1.06 0.44 16 7 N -0.48 -5.57 11.09 -12.36 -0.14 -5.71 16 8 C 0.14 1.96 7.96 -156.36 -1.24 0.71 16 9 C 0.61 9.58 7.83 -12.32 -0.10 9.49 16 10 O -0.52 -9.90 17.09 5.32 0.09 -9.81 16 11 N -0.70 -9.48 5.44 -61.24 -0.33 -9.81 16 12 C 0.13 1.80 4.96 -4.04 -0.02 1.78 16 13 C -0.10 -1.42 2.89 -88.97 -0.26 -1.67 16 14 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.11 -1.73 6.19 -24.74 -0.15 -1.88 16 16 C -0.15 -2.58 6.54 -25.07 -0.16 -2.74 16 17 C 0.17 3.45 3.55 -66.81 -0.24 3.21 16 18 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 19 N -0.72 -18.15 5.08 -52.34 -0.27 -18.41 16 20 C -0.24 -6.62 9.96 -15.06 -0.15 -6.77 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 23 N -0.93 -28.64 13.06 55.49 0.72 -27.91 16 24 Si 0.90 22.73 29.55 -169.99 -5.02 17.71 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 26 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 C -0.12 -1.98 6.14 -25.62 -0.16 -2.14 16 29 N -0.25 -3.19 11.09 32.07 0.36 -2.83 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.10 8.14 -51.93 -0.42 -0.32 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.57 8.02 -51.93 -0.42 0.15 16 36 H 0.07 0.08 7.34 -51.92 -0.38 -0.30 16 37 H 0.09 0.06 8.14 -51.93 -0.42 -0.37 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.22 0.68 7.53 -52.49 -0.40 0.28 16 40 H 0.41 4.83 8.15 -40.82 -0.33 4.50 16 41 H 0.08 1.21 8.02 -51.93 -0.42 0.80 16 42 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.19 7.97 -51.93 -0.41 0.77 16 45 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.38 10.32 7.52 -40.82 -0.31 10.02 16 48 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 49 H 0.07 1.31 7.31 -51.93 -0.38 0.93 16 50 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 408.21 15.07 6.15 6.15 Total: -1.00 -35.72 408.21 -9.96 -45.68 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -8.50 Total: 7.89 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: -2.87 Total: -0.26 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: 0.19 Total: -67.37 kcal Atomic # 8 Polarization: -9.90 SS G_CDS: 0.09 Total: -9.81 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -35.72 -9.96 -45.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086801740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.369 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.679 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds