Wall clock time and date at job start Tue Mar 31 2020 18:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52991 * 109.47175 * 2 1 4 4 C 1.52995 * 109.46834 * 240.00104 * 2 1 3 5 5 N 1.46502 * 109.46738 * 120.00356 * 2 1 3 6 6 C 1.34583 * 125.75233 * 75.00357 * 5 2 1 7 7 N 1.30871 * 107.62411 * 180.25857 * 6 5 2 8 8 C 1.34552 * 107.26834 * 359.64035 * 7 6 5 9 9 C 1.47871 * 126.04508 * 180.11807 * 8 7 6 10 10 O 1.21550 * 120.00043 * 180.27975 * 9 8 7 11 11 N 1.34778 * 120.00162 * 0.28622 * 9 8 7 12 12 C 1.46503 * 120.00191 * 179.97438 * 11 9 8 13 13 C 1.52996 * 109.47199 * 180.02562 * 12 11 9 14 14 H 1.09004 * 110.43182 * 307.54017 * 13 12 11 15 15 C 1.54885 * 110.49235 * 70.22006 * 13 12 11 16 16 C 1.54887 * 102.75020 * 156.62003 * 15 13 12 17 17 C 1.54265 * 104.19563 * 322.06096 * 16 15 13 18 18 H 1.08999 * 110.06835 * 142.91711 * 17 16 15 19 19 N 1.46501 * 110.03141 * 264.32355 * 17 16 15 20 20 C 1.36934 * 120.00072 * 272.16542 * 19 17 16 21 21 H 1.08009 * 119.99993 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00274 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99875 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00258 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47251 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47317 * 120.00206 * 24 22 20 27 27 H 1.48506 * 109.47114 * 240.00223 * 24 22 20 28 28 C 1.53876 * 106.59750 * 23.61076 * 17 16 15 29 29 N 1.28854 * 125.74457 * 255.03577 * 5 2 1 30 30 H 1.09003 * 109.47025 * 300.00017 * 1 2 3 31 31 H 1.08997 * 109.47231 * 59.99580 * 1 2 3 32 32 H 1.08996 * 109.47109 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47018 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47384 * 300.00326 * 3 2 1 35 35 H 1.09003 * 109.47158 * 60.00064 * 3 2 1 36 36 H 1.09010 * 109.47312 * 299.99675 * 4 2 1 37 37 H 1.09000 * 109.47681 * 60.00167 * 4 2 1 38 38 H 1.09002 * 109.46999 * 180.02562 * 4 2 1 39 39 H 1.08002 * 126.18341 * 359.97438 * 6 5 2 40 40 H 0.97004 * 119.99592 * 0.02562 * 11 9 8 41 41 H 1.09001 * 109.46451 * 299.99686 * 12 11 9 42 42 H 1.08999 * 109.46866 * 59.99506 * 12 11 9 43 43 H 1.09006 * 110.75670 * 274.94144 * 15 13 12 44 44 H 1.09006 * 110.75459 * 38.30398 * 15 13 12 45 45 H 1.08999 * 110.48418 * 203.38077 * 16 15 13 46 46 H 1.09000 * 110.59874 * 80.79851 * 16 15 13 47 47 H 0.97002 * 119.99808 * 92.17122 * 19 17 16 48 48 H 0.97002 * 120.00028 * 179.97438 * 23 22 20 49 49 H 1.09004 * 110.02772 * 240.71150 * 28 17 16 50 50 H 1.09000 * 110.02998 * 119.28587 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1962 6 6 2.0139 -2.0222 1.3922 7 7 2.5226 -2.2500 2.5763 8 6 2.8483 -1.0574 3.1073 9 6 3.4579 -0.8338 4.4358 10 8 3.7031 0.2966 4.8095 11 7 3.7418 -1.8833 5.2324 12 6 4.3462 -1.6617 6.5484 13 6 4.5644 -3.0076 7.2425 14 1 3.6399 -3.5850 7.2523 15 6 5.6953 -3.8016 6.5426 16 6 6.1808 -4.7602 7.6581 17 6 6.1118 -3.9103 8.9437 18 1 5.7874 -4.5263 9.7824 19 7 7.4242 -3.3251 9.2295 20 6 8.3386 -4.0240 9.9714 21 1 8.0925 -5.0068 10.3457 22 6 9.5822 -3.4698 10.2417 23 7 9.8823 -2.2724 9.7853 24 14 10.8299 -4.4235 11.2533 25 1 10.2518 -5.7341 11.6448 26 1 12.0567 -4.6443 10.4461 27 1 11.1728 -3.6499 12.4737 28 6 5.0840 -2.7960 8.6794 29 7 2.5238 -0.1256 2.2381 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 -1.7490 -1.2492 37 1 1.6767 -0.2074 -2.1393 38 1 3.1300 -0.7216 -1.2490 39 1 1.6514 -2.7674 0.6997 40 1 3.5465 -2.7854 4.9339 41 1 5.3043 -1.1561 6.4276 42 1 3.6829 -1.0437 7.1534 43 1 5.3049 -4.3629 5.6937 44 1 6.4987 -3.1348 6.2295 45 1 7.2050 -5.0803 7.4669 46 1 5.5204 -5.6239 7.7358 47 1 7.6453 -2.4426 8.8931 48 1 10.7513 -1.8849 9.9745 49 1 5.5617 -1.8199 8.7638 50 1 4.2604 -2.8718 9.3893 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086801740.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:06 Heat of formation + Delta-G solvation = 27.810617 kcal Electronic energy + Delta-G solvation = -28433.127693 eV Core-core repulsion = 24496.005763 eV Total energy + Delta-G solvation = -3937.121930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.54666 -40.79519 -39.43088 -38.21787 -36.35515 -35.02232 -33.64624 -32.57965 -32.00314 -30.30559 -28.90966 -28.45981 -28.39690 -26.55007 -25.25068 -24.32334 -24.00583 -21.77515 -21.12559 -21.04065 -20.63758 -19.17036 -18.86047 -17.65148 -17.50155 -17.42367 -16.69731 -16.57575 -16.07259 -15.87828 -15.54198 -15.17827 -15.09577 -14.96926 -14.88388 -14.43326 -14.19738 -13.80475 -13.55202 -13.29870 -13.24673 -13.13125 -13.02490 -12.97345 -12.76898 -12.48320 -12.39085 -12.34373 -12.09924 -12.00314 -11.98740 -11.72751 -11.63351 -11.49695 -11.48517 -11.44778 -11.41506 -11.31994 -10.89133 -10.63162 -10.15615 -8.94482 -7.91648 -5.19012 0.30375 1.09285 1.15338 1.46948 1.47816 1.57851 1.99179 2.23488 2.57978 3.07056 3.27533 3.40510 3.65928 3.66440 3.75911 3.78157 3.81542 3.85707 3.91403 4.21688 4.43374 4.53603 4.55449 4.58547 4.59754 4.61485 4.68879 4.70594 4.77910 4.80393 4.80949 4.85153 4.90575 4.94516 5.09870 5.10742 5.15461 5.16274 5.22209 5.24769 5.26069 5.36463 5.46585 5.52608 5.59664 5.67798 5.69202 6.31914 6.33216 6.93497 7.09889 7.36289 8.16949 8.37704 9.32333 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026495 B = 0.001812 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.563528 B =15448.587294 C =15619.834532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.157 3.843 3 C -0.150 4.150 4 C -0.156 4.156 5 N -0.287 5.287 6 C 0.202 3.798 7 N -0.500 5.500 8 C 0.114 3.886 9 C 0.608 3.392 10 O -0.567 6.567 11 N -0.688 5.688 12 C 0.133 3.867 13 C -0.083 4.083 14 H 0.111 0.889 15 C -0.107 4.107 16 C -0.138 4.138 17 C 0.162 3.838 18 H 0.047 0.953 19 N -0.734 5.734 20 C -0.233 4.233 21 H 0.077 0.923 22 C -0.083 4.083 23 N -0.973 5.973 24 Si 0.971 3.029 25 H -0.264 1.264 26 H -0.296 1.296 27 H -0.295 1.295 28 C -0.116 4.116 29 N -0.275 5.275 30 H 0.046 0.954 31 H 0.113 0.887 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.092 0.908 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.272 0.728 40 H 0.420 0.580 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.040 0.960 45 H 0.038 0.962 46 H 0.079 0.921 47 H 0.370 0.630 48 H 0.248 0.752 49 H 0.051 0.949 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.853 -0.603 -27.611 37.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 C -0.207 4.207 4 C -0.214 4.214 5 N -0.083 5.083 6 C -0.092 4.092 7 N -0.226 5.226 8 C -0.165 4.165 9 C 0.391 3.609 10 O -0.444 6.444 11 N -0.341 5.341 12 C 0.010 3.990 13 C -0.102 4.102 14 H 0.129 0.871 15 C -0.145 4.145 16 C -0.178 4.178 17 C 0.053 3.947 18 H 0.065 0.935 19 N -0.374 5.374 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.274 4.274 23 N -0.624 5.624 24 Si 0.801 3.199 25 H -0.188 1.188 26 H -0.224 1.224 27 H -0.223 1.223 28 C -0.155 4.155 29 N -0.116 5.116 30 H 0.065 0.935 31 H 0.131 0.869 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.128 0.872 35 H 0.069 0.931 36 H 0.111 0.889 37 H 0.132 0.868 38 H 0.074 0.926 39 H 0.288 0.712 40 H 0.258 0.742 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.102 0.898 44 H 0.059 0.941 45 H 0.057 0.943 46 H 0.098 0.902 47 H 0.202 0.798 48 H 0.057 0.943 49 H 0.070 0.930 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.469 0.416 -26.911 37.054 hybrid contribution 1.326 -0.115 0.460 1.408 sum -24.143 0.301 -26.451 35.814 Atomic orbital electron populations 1.22282 0.89919 1.04735 1.04357 1.21662 0.96586 0.93887 0.80219 1.22020 1.01372 0.93271 1.04069 1.22311 1.01864 1.02428 0.94798 1.48200 1.40147 1.06864 1.13127 1.27235 0.99530 0.86896 0.95563 1.71219 1.17624 1.25094 1.08706 1.23440 1.08216 0.86969 0.97892 1.16619 0.77738 0.84674 0.81891 1.90803 1.54716 1.24268 1.74567 1.45566 1.61625 1.09544 1.17316 1.21465 0.97504 0.98068 0.81960 1.22106 0.99817 0.94174 0.94072 0.87104 1.22445 0.96819 0.97534 0.97685 1.22949 1.00013 0.98382 0.96448 1.21145 0.84747 0.93526 0.95257 0.93493 1.42785 1.12676 1.19281 1.62697 1.19709 0.94253 0.99286 1.23268 0.90533 1.25563 1.00195 0.98037 1.03630 1.69842 1.22413 1.17688 1.52470 0.85089 0.78940 0.78181 0.77687 1.18829 1.22387 1.22287 1.22375 0.98423 0.98562 0.96095 1.74230 1.14088 1.26548 0.96690 0.93519 0.86890 0.89744 0.93232 0.87193 0.93050 0.88896 0.86807 0.92589 0.71244 0.74208 0.93171 0.91022 0.89782 0.94096 0.94285 0.90236 0.79845 0.94281 0.92991 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 8.72 71.98 0.63 0.08 16 2 C 0.16 1.19 1.23 3.60 0.00 1.20 16 3 C -0.15 -1.58 8.04 71.98 0.58 -1.00 16 4 C -0.16 -0.20 8.28 71.98 0.60 0.39 16 5 N -0.29 -4.57 3.17 -311.59 -0.99 -5.55 16 6 C 0.20 2.66 11.71 180.30 2.11 4.77 16 7 N -0.50 -10.77 11.09 -193.03 -2.14 -12.91 16 8 C 0.11 3.19 7.96 137.13 1.09 4.28 16 9 C 0.61 19.67 7.83 86.79 0.68 20.35 16 10 O -0.57 -22.87 17.09 -3.87 -0.07 -22.94 16 11 N -0.69 -18.33 5.44 -465.94 -2.54 -20.86 16 12 C 0.13 3.78 4.96 86.38 0.43 4.21 16 13 C -0.08 -2.14 2.89 -9.72 -0.03 -2.17 16 14 H 0.11 2.22 8.14 -2.38 -0.02 2.20 16 15 C -0.11 -3.13 6.19 31.88 0.20 -2.93 16 16 C -0.14 -4.70 6.54 31.67 0.21 -4.49 16 17 C 0.16 6.33 3.55 45.72 0.16 6.49 16 18 H 0.05 1.85 8.08 -2.39 -0.02 1.83 16 19 N -0.73 -37.87 5.08 -319.51 -1.62 -39.49 16 20 C -0.23 -13.21 9.96 84.03 0.84 -12.37 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.08 -4.88 5.50 84.86 0.47 -4.42 16 23 N -0.97 -61.75 13.06 21.65 0.28 -61.46 16 24 Si 0.97 47.51 29.55 68.60 2.03 49.53 16 25 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 27 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 28 C -0.12 -3.69 6.14 31.32 0.19 -3.50 16 29 N -0.28 -7.26 11.09 -52.44 -0.58 -7.84 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 32 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.05 0.80 8.02 -2.39 -0.02 0.79 16 36 H 0.09 -0.26 7.34 -2.38 -0.02 -0.28 16 37 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 38 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 39 H 0.27 0.30 7.53 -2.91 -0.02 0.27 16 40 H 0.42 9.23 8.15 -92.71 -0.76 8.47 16 41 H 0.05 1.70 8.02 -2.39 -0.02 1.68 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.08 1.98 8.14 -2.38 -0.02 1.96 16 44 H 0.04 1.43 7.97 -2.38 -0.02 1.41 16 45 H 0.04 1.58 8.04 -2.39 -0.02 1.56 16 46 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.37 20.82 7.52 -92.71 -0.70 20.12 16 48 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 49 H 0.05 1.90 7.31 -2.38 -0.02 1.88 16 50 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -83.25 408.21 2.02 -81.24 By element: Atomic # 1 Polarization: 29.91 SS G_CDS: -0.51 Total: 29.39 kcal Atomic # 6 Polarization: 2.73 SS G_CDS: 8.15 Total: 10.88 kcal Atomic # 7 Polarization: -140.53 SS G_CDS: -7.59 Total: -148.11 kcal Atomic # 8 Polarization: -22.87 SS G_CDS: -0.07 Total: -22.94 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.53 kcal Total: -83.25 2.02 -81.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086801740.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.046 kcal (2) G-P(sol) polarization free energy of solvation -83.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds