Wall clock time and date at job start Tue Mar 31 2020 18:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86685 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.85194 * 3 2 1 6 6 H 1.09007 * 110.71867 * 336.75122 * 5 3 2 7 7 N 1.46502 * 110.72383 * 100.02569 * 5 3 2 8 8 C 1.34767 * 120.00022 * 205.00268 * 7 5 3 9 9 O 1.21557 * 120.00215 * 359.97438 * 8 7 5 10 10 C 1.47879 * 119.99933 * 180.02562 * 8 7 5 11 11 N 1.34545 * 126.04498 * 359.68663 * 10 8 7 12 12 C 1.30871 * 107.26690 * 179.89653 * 11 10 8 13 13 N 1.34592 * 107.62410 * 0.36507 * 12 11 10 14 14 C 1.46497 * 125.74896 * 179.73639 * 13 12 11 15 15 C 1.53003 * 109.47484 * 75.01038 * 14 13 12 16 16 C 1.53001 * 109.47156 * 195.01620 * 14 13 12 17 17 C 1.53010 * 109.46863 * 315.01327 * 14 13 12 18 18 N 1.28846 * 108.50085 * 359.76507 * 13 12 11 19 19 C 1.55395 * 102.82877 * 218.48426 * 5 3 2 20 20 C 1.54915 * 101.66772 * 35.33154 * 19 5 3 21 21 N 1.47020 * 109.88141 * 174.88316 * 3 2 1 22 22 C 1.36938 * 125.64666 * 298.39123 * 21 3 2 23 23 H 1.08001 * 120.00393 * 345.37218 * 22 21 3 24 24 C 1.38815 * 120.00081 * 165.36920 * 22 21 3 25 25 N 1.31618 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00108 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47028 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47008 * 119.99913 * 26 24 22 29 29 H 1.48500 * 109.46660 * 239.99964 * 26 24 22 30 30 H 1.09004 * 109.47082 * 185.52498 * 1 2 3 31 31 H 1.09003 * 109.47181 * 305.51794 * 1 2 3 32 32 H 1.08994 * 109.47276 * 65.52179 * 1 2 3 33 33 H 1.08997 * 109.46944 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.47153 * 119.99986 * 2 1 3 35 35 H 0.96997 * 119.99670 * 24.99735 * 7 5 3 36 36 H 1.07993 * 126.19000 * 180.13304 * 12 11 10 37 37 H 1.09003 * 109.46394 * 60.00111 * 15 14 13 38 38 H 1.08998 * 109.47131 * 180.02562 * 15 14 13 39 39 H 1.08992 * 109.47241 * 300.00514 * 15 14 13 40 40 H 1.09002 * 109.46913 * 59.99756 * 16 14 13 41 41 H 1.09004 * 109.46630 * 179.97438 * 16 14 13 42 42 H 1.08993 * 109.46705 * 299.99668 * 16 14 13 43 43 H 1.09002 * 109.46907 * 60.00135 * 17 14 13 44 44 H 1.08996 * 109.47193 * 179.97438 * 17 14 13 45 45 H 1.08994 * 109.47210 * 300.00090 * 17 14 13 46 46 H 1.09003 * 110.89273 * 277.26459 * 19 5 3 47 47 H 1.09002 * 111.04346 * 153.47001 * 19 5 3 48 48 H 1.08995 * 110.36695 * 204.23430 * 20 19 5 49 49 H 1.09007 * 110.36356 * 81.91809 * 20 19 5 50 50 H 0.97001 * 120.00119 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6836 2.1252 -1.3373 6 1 1.5339 1.3829 -2.1214 7 7 0.4961 2.9700 -1.1878 8 6 -0.2743 3.2452 -2.2588 9 8 0.0164 2.7928 -3.3490 10 6 -1.4727 4.0984 -2.1080 11 7 -1.9085 4.6562 -0.9638 12 6 -2.9910 5.3337 -1.2496 13 7 -3.2274 5.1876 -2.5665 14 6 -4.3463 5.7772 -3.3059 15 6 -4.0902 7.2714 -3.5127 16 6 -4.4778 5.0891 -4.6661 17 6 -5.6396 5.5867 -2.5108 18 7 -2.3041 4.4414 -3.0673 19 6 2.9426 2.9875 -1.6308 20 6 4.0755 2.0852 -1.0810 21 7 3.5050 1.4549 0.1233 22 6 4.2210 0.9618 1.1813 23 1 3.7224 0.7353 2.1122 24 6 5.5878 0.7530 1.0574 25 7 6.1955 1.0294 -0.0768 26 14 6.5644 0.0797 2.5005 27 1 5.6542 -0.1462 3.6518 28 1 7.2000 -1.2048 2.1118 29 1 7.6154 1.0557 2.8851 30 1 -0.3633 -1.0229 0.0989 31 1 -0.3634 0.5970 0.8365 32 1 -0.3633 0.4258 -0.9352 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.2643 3.3311 -0.3179 36 1 -3.5889 5.9037 -0.5539 37 1 -3.1688 7.4070 -4.0791 38 1 -4.9229 7.7100 -4.0624 39 1 -3.9965 7.7615 -2.5437 40 1 -4.6603 4.0246 -4.5186 41 1 -5.3107 5.5275 -5.2159 42 1 -3.5565 5.2248 -5.2324 43 1 -5.5459 6.0769 -1.5417 44 1 -6.4721 6.0257 -3.0606 45 1 -5.8221 4.5223 -2.3634 46 1 2.9001 3.9337 -1.0912 47 1 3.0614 3.1552 -2.7013 48 1 4.9458 2.6866 -0.8184 49 1 4.3456 1.3259 -1.8149 50 1 7.1505 0.8832 -0.1636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087724989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:23 Heat of formation + Delta-G solvation = 73.755703 kcal Electronic energy + Delta-G solvation = -29687.077943 eV Core-core repulsion = 25751.948342 eV Total energy + Delta-G solvation = -3935.129601 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.64627 -39.52621 -37.84616 -37.37817 -34.01984 -32.88999 -32.54948 -31.67114 -31.06706 -28.93873 -28.13178 -27.99887 -26.70116 -25.00805 -23.83611 -23.19255 -22.02280 -20.55457 -20.36581 -20.07384 -19.55320 -17.77208 -16.81061 -16.72775 -16.62146 -16.01002 -15.10191 -14.81034 -14.72172 -14.65355 -14.14413 -13.95487 -13.85951 -13.65231 -13.33790 -13.09753 -13.02524 -12.88298 -12.62632 -12.40634 -12.26267 -11.97978 -11.88579 -11.85958 -11.58550 -11.53280 -11.06805 -10.85398 -10.79525 -10.55946 -10.55119 -10.50629 -10.38790 -10.27696 -10.01040 -9.84274 -9.67174 -9.64433 -9.59867 -8.58702 -8.49562 -6.74906 -5.70542 -3.06488 1.36446 1.89329 2.03326 3.19818 3.42145 3.48055 3.50278 3.52062 3.80337 4.03786 4.06756 4.16729 4.48798 4.52950 4.74149 4.80789 4.94555 4.99383 5.07335 5.13005 5.21808 5.33788 5.35129 5.42571 5.51975 5.57595 5.61393 5.71648 5.84656 5.86630 5.90579 5.95697 6.15056 6.19905 6.31942 6.35442 6.37702 6.50380 6.54576 6.63116 6.75042 6.81611 7.02292 7.21448 7.57240 7.65385 7.70141 7.84430 8.00738 8.31288 8.42957 9.23246 9.84170 10.52485 11.41573 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002353 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.758951 B =11895.146368 C =12084.222198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.131 4.131 3 C 0.161 3.839 4 H 0.038 0.962 5 C 0.138 3.862 6 H 0.097 0.903 7 N -0.691 5.691 8 C 0.613 3.387 9 O -0.523 6.523 10 C 0.144 3.856 11 N -0.482 5.482 12 C 0.186 3.814 13 N -0.295 5.295 14 C 0.167 3.833 15 C -0.160 4.160 16 C -0.149 4.149 17 C -0.160 4.160 18 N -0.249 5.249 19 C -0.157 4.157 20 C 0.175 3.825 21 N -0.594 5.594 22 C -0.225 4.225 23 H 0.076 0.924 24 C -0.005 4.005 25 N -0.916 5.916 26 Si 0.909 3.091 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.291 1.291 30 H 0.043 0.957 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.057 0.943 34 H 0.065 0.935 35 H 0.407 0.593 36 H 0.220 0.780 37 H 0.069 0.931 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.028 0.972 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.773 12.433 -5.217 29.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.171 4.171 3 C 0.053 3.947 4 H 0.055 0.945 5 C 0.034 3.966 6 H 0.115 0.885 7 N -0.342 5.342 8 C 0.394 3.606 9 O -0.396 6.396 10 C -0.136 4.136 11 N -0.207 5.207 12 C -0.109 4.109 13 N -0.092 5.092 14 C 0.085 3.915 15 C -0.218 4.218 16 C -0.207 4.207 17 C -0.218 4.218 18 N -0.087 5.087 19 C -0.197 4.197 20 C 0.049 3.951 21 N -0.318 5.318 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.202 4.202 25 N -0.563 5.563 26 Si 0.740 3.260 27 H -0.205 1.205 28 H -0.217 1.217 29 H -0.218 1.218 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.243 0.757 36 H 0.236 0.764 37 H 0.088 0.912 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.089 0.911 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.047 0.953 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -25.057 11.783 -6.305 28.398 hybrid contribution 0.131 0.042 1.311 1.318 sum -24.926 11.825 -4.994 28.037 Atomic orbital electron populations 1.21768 0.97264 1.00410 1.01003 1.22011 0.93565 0.99101 1.02405 1.21078 0.87215 0.93435 0.92993 0.94488 1.22231 0.82875 0.92373 0.99136 0.88518 1.45759 1.26558 1.50979 1.10879 1.16267 0.80122 0.79422 0.84817 1.90820 1.71174 1.51878 1.25762 1.23896 0.99586 1.04045 0.86056 1.71301 1.10237 1.12148 1.27019 1.26295 0.96747 1.01758 0.86107 1.47779 1.19648 1.33817 1.07907 1.21152 0.82853 0.94113 0.93392 1.22266 1.03913 0.92148 1.03485 1.21998 1.03814 1.01278 0.93562 1.22262 0.95067 1.03822 1.00656 1.74295 0.99744 1.09029 1.25629 1.23494 0.96500 0.99200 1.00485 1.21431 0.92934 0.93087 0.87603 1.44447 0.98498 1.69194 1.19709 1.18991 0.90069 1.35998 0.90248 0.90633 1.24911 0.97115 1.01075 0.97066 1.69941 1.09241 1.53194 1.23939 0.86082 0.80021 0.78410 0.81482 1.20452 1.21747 1.21811 0.93750 0.93338 0.93438 0.92400 0.91600 0.75699 0.76355 0.91178 0.89610 0.91327 0.91236 0.90353 0.90460 0.91113 0.89349 0.91111 0.91910 0.91802 0.90765 0.95350 0.93718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.65 37.16 0.36 -1.99 16 2 C -0.13 -2.54 5.43 -26.73 -0.15 -2.69 16 3 C 0.16 3.32 2.91 -66.96 -0.19 3.13 16 4 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 5 C 0.14 2.65 2.10 -65.97 -0.14 2.51 16 6 H 0.10 1.98 7.18 -51.93 -0.37 1.61 16 7 N -0.69 -11.61 4.96 -52.83 -0.26 -11.87 16 8 C 0.61 10.89 7.83 -12.32 -0.10 10.80 16 9 O -0.52 -10.90 16.73 5.32 0.09 -10.81 16 10 C 0.14 2.24 7.96 -156.36 -1.24 1.00 16 11 N -0.48 -6.36 11.09 -12.36 -0.14 -6.49 16 12 C 0.19 1.73 11.71 -90.47 -1.06 0.67 16 13 N -0.29 -2.88 3.17 -49.83 -0.16 -3.04 16 14 C 0.17 0.97 1.23 -131.81 -0.16 0.80 16 15 C -0.16 -0.68 8.72 37.16 0.32 -0.35 16 16 C -0.15 -0.94 8.04 37.16 0.30 -0.64 16 17 C -0.16 -0.50 8.28 37.16 0.31 -0.20 16 18 N -0.25 -3.53 11.09 32.07 0.36 -3.18 16 19 C -0.16 -3.21 6.78 -24.45 -0.17 -3.37 16 20 C 0.17 4.31 5.41 -2.53 -0.01 4.29 16 21 N -0.59 -14.96 3.13 -162.58 -0.51 -15.46 16 22 C -0.22 -6.16 9.71 -15.06 -0.15 -6.30 16 23 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 24 C 0.00 -0.14 5.47 -17.43 -0.10 -0.23 16 25 N -0.92 -26.90 10.57 55.49 0.59 -26.31 16 26 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 28 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 29 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.77 7.47 -51.93 -0.39 0.39 16 33 H 0.06 1.18 8.02 -51.93 -0.42 0.77 16 34 H 0.07 1.36 7.84 -51.93 -0.41 0.95 16 35 H 0.41 6.29 8.08 -40.82 -0.33 5.96 16 36 H 0.22 0.96 7.53 -52.49 -0.40 0.56 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 39 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 43 H 0.07 0.14 7.34 -51.93 -0.38 -0.25 16 44 H 0.09 0.12 8.14 -51.93 -0.42 -0.31 16 45 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 47 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 48 H 0.07 2.02 6.93 -51.93 -0.36 1.66 16 49 H 0.03 0.76 8.06 -51.92 -0.42 0.34 16 50 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 402.75 15.07 6.07 6.07 Total: -1.00 -34.27 402.75 -9.64 -43.91 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -8.48 Total: 2.70 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -2.17 Total: 7.43 kcal Atomic # 7 Polarization: -66.23 SS G_CDS: -0.12 Total: -66.35 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.27 -9.64 -43.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087724989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.668 kcal (2) G-P(sol) polarization free energy of solvation -34.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds