Wall clock time and date at job start Tue Mar 31 2020 18:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47073 * 2 1 4 4 H 1.09003 * 109.87577 * 53.86685 * 3 2 1 5 5 C 1.54322 * 109.88341 * 292.85194 * 3 2 1 6 6 H 1.09007 * 110.71867 * 336.75122 * 5 3 2 7 7 N 1.46502 * 110.72383 * 100.02569 * 5 3 2 8 8 C 1.34767 * 120.00022 * 205.00268 * 7 5 3 9 9 O 1.21557 * 120.00215 * 359.97438 * 8 7 5 10 10 C 1.47879 * 119.99933 * 180.02562 * 8 7 5 11 11 N 1.34545 * 126.04498 * 359.68663 * 10 8 7 12 12 C 1.30871 * 107.26690 * 179.89653 * 11 10 8 13 13 N 1.34592 * 107.62410 * 0.36507 * 12 11 10 14 14 C 1.46497 * 125.74896 * 179.73639 * 13 12 11 15 15 C 1.53003 * 109.47484 * 75.01038 * 14 13 12 16 16 C 1.53001 * 109.47156 * 195.01620 * 14 13 12 17 17 C 1.53010 * 109.46863 * 315.01327 * 14 13 12 18 18 N 1.28846 * 108.50085 * 359.76507 * 13 12 11 19 19 C 1.55395 * 102.82877 * 218.48426 * 5 3 2 20 20 C 1.54915 * 101.66772 * 35.33154 * 19 5 3 21 21 N 1.47020 * 109.88141 * 174.88316 * 3 2 1 22 22 C 1.36938 * 125.64666 * 298.39123 * 21 3 2 23 23 H 1.08001 * 120.00393 * 345.37218 * 22 21 3 24 24 C 1.38815 * 120.00081 * 165.36920 * 22 21 3 25 25 N 1.31618 * 119.99701 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00108 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47028 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47008 * 119.99913 * 26 24 22 29 29 H 1.48500 * 109.46660 * 239.99964 * 26 24 22 30 30 H 1.09004 * 109.47082 * 185.52498 * 1 2 3 31 31 H 1.09003 * 109.47181 * 305.51794 * 1 2 3 32 32 H 1.08994 * 109.47276 * 65.52179 * 1 2 3 33 33 H 1.08997 * 109.46944 * 240.00169 * 2 1 3 34 34 H 1.09000 * 109.47153 * 119.99986 * 2 1 3 35 35 H 0.96997 * 119.99670 * 24.99735 * 7 5 3 36 36 H 1.07993 * 126.19000 * 180.13304 * 12 11 10 37 37 H 1.09003 * 109.46394 * 60.00111 * 15 14 13 38 38 H 1.08998 * 109.47131 * 180.02562 * 15 14 13 39 39 H 1.08992 * 109.47241 * 300.00514 * 15 14 13 40 40 H 1.09002 * 109.46913 * 59.99756 * 16 14 13 41 41 H 1.09004 * 109.46630 * 179.97438 * 16 14 13 42 42 H 1.08993 * 109.46705 * 299.99668 * 16 14 13 43 43 H 1.09002 * 109.46907 * 60.00135 * 17 14 13 44 44 H 1.08996 * 109.47193 * 179.97438 * 17 14 13 45 45 H 1.08994 * 109.47210 * 300.00090 * 17 14 13 46 46 H 1.09003 * 110.89273 * 277.26459 * 19 5 3 47 47 H 1.09002 * 111.04346 * 153.47001 * 19 5 3 48 48 H 1.08995 * 110.36695 * 204.23430 * 20 19 5 49 49 H 1.09007 * 110.36356 * 81.91809 * 20 19 5 50 50 H 0.97001 * 120.00119 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5937 1.9934 0.8279 5 6 1.6836 2.1252 -1.3373 6 1 1.5339 1.3829 -2.1214 7 7 0.4961 2.9700 -1.1878 8 6 -0.2743 3.2452 -2.2588 9 8 0.0164 2.7928 -3.3490 10 6 -1.4727 4.0984 -2.1080 11 7 -1.9085 4.6562 -0.9638 12 6 -2.9910 5.3337 -1.2496 13 7 -3.2274 5.1876 -2.5665 14 6 -4.3463 5.7772 -3.3059 15 6 -4.0902 7.2714 -3.5127 16 6 -4.4778 5.0891 -4.6661 17 6 -5.6396 5.5867 -2.5108 18 7 -2.3041 4.4414 -3.0673 19 6 2.9426 2.9875 -1.6308 20 6 4.0755 2.0852 -1.0810 21 7 3.5050 1.4549 0.1233 22 6 4.2210 0.9618 1.1813 23 1 3.7224 0.7353 2.1122 24 6 5.5878 0.7530 1.0574 25 7 6.1955 1.0294 -0.0768 26 14 6.5644 0.0797 2.5005 27 1 5.6542 -0.1462 3.6518 28 1 7.2000 -1.2048 2.1118 29 1 7.6154 1.0557 2.8851 30 1 -0.3633 -1.0229 0.0989 31 1 -0.3634 0.5970 0.8365 32 1 -0.3633 0.4258 -0.9352 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.2643 3.3311 -0.3179 36 1 -3.5889 5.9037 -0.5539 37 1 -3.1688 7.4070 -4.0791 38 1 -4.9229 7.7100 -4.0624 39 1 -3.9965 7.7615 -2.5437 40 1 -4.6603 4.0246 -4.5186 41 1 -5.3107 5.5275 -5.2159 42 1 -3.5565 5.2248 -5.2324 43 1 -5.5459 6.0769 -1.5417 44 1 -6.4721 6.0257 -3.0606 45 1 -5.8221 4.5223 -2.3634 46 1 2.9001 3.9337 -1.0912 47 1 3.0614 3.1552 -2.7013 48 1 4.9458 2.6866 -0.8184 49 1 4.3456 1.3259 -1.8149 50 1 7.1505 0.8832 -0.1636 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087724989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:22 Heat of formation + Delta-G solvation = 52.243047 kcal Electronic energy + Delta-G solvation = -29688.010801 eV Core-core repulsion = 25751.948342 eV Total energy + Delta-G solvation = -3936.062460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -44.52260 -41.02700 -39.28157 -38.17960 -35.70385 -34.38487 -33.70300 -33.35962 -32.04883 -30.79339 -28.53501 -28.38451 -28.22674 -26.67127 -25.33097 -23.99625 -23.52630 -22.22021 -21.63207 -21.15200 -21.05518 -18.82417 -18.74618 -17.64396 -17.55766 -17.37417 -16.73146 -16.08195 -15.93522 -15.73258 -15.40982 -15.27827 -15.03493 -14.87445 -14.68542 -14.34796 -13.81022 -13.76170 -13.56875 -13.29332 -13.24668 -13.22365 -13.00613 -12.89610 -12.75078 -12.71124 -12.63543 -12.37165 -12.23364 -12.03212 -11.99141 -11.97933 -11.92068 -11.57849 -11.45725 -11.43108 -11.40206 -11.31724 -10.67372 -10.58063 -10.04793 -8.81952 -7.83838 -5.21948 0.32920 1.12220 1.16641 1.48594 1.49379 1.59747 1.97266 2.26317 2.52204 3.07846 3.28140 3.36614 3.58900 3.68029 3.78694 3.81144 3.82439 3.88046 3.91297 4.17310 4.35897 4.40259 4.56654 4.59620 4.60306 4.62294 4.63293 4.70626 4.73422 4.79698 4.82154 4.83155 4.94227 5.00398 5.11100 5.12363 5.17273 5.18858 5.23870 5.27019 5.39306 5.43759 5.49835 5.57152 5.63094 5.71145 5.72651 6.24414 6.36712 6.95653 7.10431 7.12953 7.77414 8.45192 9.27876 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.026692 B = 0.002353 C = 0.002317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.758951 B =11895.146368 C =12084.222198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.125 4.125 3 C 0.160 3.840 4 H 0.051 0.949 5 C 0.156 3.844 6 H 0.083 0.917 7 N -0.678 5.678 8 C 0.615 3.385 9 O -0.562 6.562 10 C 0.116 3.884 11 N -0.502 5.502 12 C 0.202 3.798 13 N -0.286 5.286 14 C 0.157 3.843 15 C -0.156 4.156 16 C -0.149 4.149 17 C -0.155 4.155 18 N -0.271 5.271 19 C -0.143 4.143 20 C 0.184 3.816 21 N -0.612 5.612 22 C -0.230 4.230 23 H 0.083 0.917 24 C -0.064 4.064 25 N -0.950 5.950 26 Si 0.976 3.024 27 H -0.263 1.263 28 H -0.295 1.295 29 H -0.293 1.293 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.042 0.958 33 H 0.039 0.961 34 H 0.053 0.947 35 H 0.417 0.583 36 H 0.272 0.728 37 H 0.044 0.956 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.110 0.890 42 H 0.049 0.951 43 H 0.091 0.909 44 H 0.114 0.886 45 H 0.057 0.943 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.043 0.957 49 H -0.003 1.003 50 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.514 14.141 -3.573 32.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.164 4.164 3 C 0.053 3.947 4 H 0.069 0.931 5 C 0.050 3.950 6 H 0.101 0.899 7 N -0.330 5.330 8 C 0.398 3.602 9 O -0.438 6.438 10 C -0.162 4.162 11 N -0.228 5.228 12 C -0.093 4.093 13 N -0.083 5.083 14 C 0.076 3.924 15 C -0.214 4.214 16 C -0.207 4.207 17 C -0.213 4.213 18 N -0.112 5.112 19 C -0.182 4.182 20 C 0.058 3.942 21 N -0.336 5.336 22 C -0.359 4.359 23 H 0.101 0.899 24 C -0.257 4.257 25 N -0.598 5.598 26 Si 0.805 3.195 27 H -0.187 1.187 28 H -0.222 1.222 29 H -0.220 1.220 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.072 0.928 35 H 0.254 0.746 36 H 0.287 0.713 37 H 0.064 0.936 38 H 0.132 0.868 39 H 0.101 0.899 40 H 0.070 0.930 41 H 0.128 0.872 42 H 0.069 0.931 43 H 0.110 0.890 44 H 0.132 0.868 45 H 0.076 0.924 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.062 0.938 49 H 0.015 0.985 50 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -28.864 13.512 -4.633 32.205 hybrid contribution 1.135 -0.398 0.741 1.413 sum -27.728 13.113 -3.892 30.919 Atomic orbital electron populations 1.21642 0.94205 1.01904 1.01379 1.21892 0.96120 0.97522 1.00890 1.21221 0.84820 0.94650 0.94009 0.93131 1.21825 0.83304 0.91966 0.97888 0.89857 1.45496 1.25603 1.50502 1.11352 1.16546 0.80597 0.78995 0.84072 1.90790 1.72398 1.53511 1.27148 1.23347 0.99736 1.05660 0.87499 1.71236 1.11957 1.13176 1.26454 1.27219 0.95559 1.00142 0.86349 1.48208 1.19201 1.32360 1.08532 1.21671 0.82813 0.94716 0.93160 1.22289 1.03872 0.90891 1.04348 1.22018 1.03705 1.00634 0.94313 1.22305 0.93857 1.03520 1.01636 1.74220 1.00624 1.09988 1.26355 1.23312 0.95464 0.98821 1.00650 1.21128 0.93474 0.92455 0.87136 1.44673 1.00480 1.69263 1.19227 1.19345 0.90487 1.34955 0.91089 0.89915 1.25728 0.98294 1.02048 0.99635 1.70146 1.09011 1.54700 1.25969 0.85041 0.78463 0.77091 0.78938 1.18726 1.22243 1.22031 0.91971 0.91803 0.93887 0.94235 0.92793 0.74552 0.71296 0.93636 0.86807 0.89894 0.93025 0.87166 0.93136 0.89032 0.86783 0.92399 0.90899 0.91281 0.93829 0.98466 0.94372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.65 71.98 0.69 -3.37 16 2 C -0.12 -4.82 5.43 30.60 0.17 -4.65 16 3 C 0.16 6.61 2.91 45.34 0.13 6.74 16 4 H 0.05 1.99 7.71 -2.39 -0.02 1.97 16 5 C 0.16 6.03 2.10 46.26 0.10 6.13 16 6 H 0.08 3.52 7.18 -2.38 -0.02 3.50 16 7 N -0.68 -22.60 4.96 -439.35 -2.18 -24.78 16 8 C 0.61 22.07 7.83 86.80 0.68 22.75 16 9 O -0.56 -24.16 16.73 -3.89 -0.07 -24.23 16 10 C 0.12 3.56 7.96 137.13 1.09 4.66 16 11 N -0.50 -12.30 11.09 -193.03 -2.14 -14.44 16 12 C 0.20 3.10 11.71 180.30 2.11 5.21 16 13 N -0.29 -5.03 3.17 -311.57 -0.99 -6.01 16 14 C 0.16 1.38 1.23 3.61 0.00 1.39 16 15 C -0.16 -0.81 8.72 71.98 0.63 -0.18 16 16 C -0.15 -1.69 8.04 71.98 0.58 -1.11 16 17 C -0.16 -0.33 8.28 71.99 0.60 0.27 16 18 N -0.27 -7.62 11.09 -52.43 -0.58 -8.20 16 19 C -0.14 -5.97 6.78 32.07 0.22 -5.75 16 20 C 0.18 9.48 5.41 86.86 0.47 9.95 16 21 N -0.61 -31.50 3.13 -668.27 -2.09 -33.59 16 22 C -0.23 -12.75 9.71 84.03 0.82 -11.93 16 23 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 24 C -0.06 -3.64 5.47 84.86 0.46 -3.18 16 25 N -0.95 -57.88 10.57 21.65 0.23 -57.65 16 26 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 29 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 30 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 31 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.04 1.35 7.47 -2.39 -0.02 1.34 16 33 H 0.04 1.65 8.02 -2.39 -0.02 1.63 16 34 H 0.05 2.20 7.84 -2.39 -0.02 2.18 16 35 H 0.42 12.40 8.08 -92.71 -0.75 11.65 16 36 H 0.27 0.88 7.53 -2.91 -0.02 0.86 16 37 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.08 0.22 8.14 -2.39 -0.02 0.20 16 40 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 41 H 0.11 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.05 0.84 8.02 -2.39 -0.02 0.82 16 43 H 0.09 -0.15 7.34 -2.39 -0.02 -0.17 16 44 H 0.11 -0.28 8.14 -2.39 -0.02 -0.30 16 45 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 46 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.04 2.49 6.93 -2.39 -0.02 2.47 16 49 H 0.00 -0.15 8.06 -2.38 -0.02 -0.17 16 50 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 Total: -1.00 -79.16 402.75 3.14 -76.02 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.18 Total: 17.89 kcal Atomic # 6 Polarization: 18.17 SS G_CDS: 8.75 Total: 26.91 kcal Atomic # 7 Polarization: -136.92 SS G_CDS: -7.75 Total: -144.67 kcal Atomic # 8 Polarization: -24.16 SS G_CDS: -0.07 Total: -24.23 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -79.16 3.14 -76.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087724989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.265 kcal (2) G-P(sol) polarization free energy of solvation -79.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.022 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds