Wall clock time and date at job start Tue Mar 31 2020 18:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47337 * 2 1 4 4 H 1.09005 * 109.99626 * 311.51894 * 3 2 1 5 5 C 1.54330 * 109.99528 * 190.47924 * 3 2 1 6 6 H 1.08996 * 110.66743 * 337.04374 * 5 3 2 7 7 N 1.46504 * 110.84773 * 100.19416 * 5 3 2 8 8 C 1.34780 * 119.99790 * 200.14697 * 7 5 3 9 9 O 1.21593 * 120.00093 * 0.02562 * 8 7 5 10 10 C 1.47523 * 119.99984 * 180.02562 * 8 7 5 11 11 N 1.34396 * 125.77028 * 359.69189 * 10 8 7 12 12 N 1.28757 * 109.52469 * 179.85215 * 11 10 8 13 13 N 1.40214 * 108.36656 * 0.40877 * 12 11 10 14 14 C 1.46502 * 126.59476 * 179.74676 * 13 12 11 15 15 C 1.52996 * 109.47343 * 299.99764 * 14 13 12 16 16 C 1.52998 * 109.47042 * 60.00058 * 14 13 12 17 17 C 1.34815 * 106.80932 * 359.74786 * 13 12 11 18 18 C 1.50698 * 126.58046 * 180.02562 * 17 13 12 19 19 C 1.55147 * 103.02258 * 218.66235 * 5 3 2 20 20 C 1.54911 * 101.58561 * 35.30593 * 19 5 3 21 21 N 1.47026 * 109.88595 * 72.60814 * 3 2 1 22 22 C 1.36933 * 125.64764 * 298.40521 * 21 3 2 23 23 H 1.08006 * 120.00589 * 46.90505 * 22 21 3 24 24 C 1.38816 * 119.99775 * 226.90617 * 22 21 3 25 25 N 1.31614 * 119.99877 * 192.81435 * 24 22 21 26 26 Si 1.86798 * 119.99832 * 13.09142 * 24 22 21 27 27 H 1.48497 * 109.47398 * 267.19235 * 26 24 22 28 28 H 1.48508 * 109.47003 * 27.19534 * 26 24 22 29 29 H 1.48508 * 109.47150 * 147.18742 * 26 24 22 30 30 H 1.09004 * 109.46645 * 158.60728 * 1 2 3 31 31 H 1.08998 * 109.47273 * 278.60782 * 1 2 3 32 32 H 1.09001 * 109.46987 * 38.61750 * 1 2 3 33 33 H 1.08995 * 109.47398 * 239.99553 * 2 1 3 34 34 H 1.09002 * 109.47038 * 119.99560 * 2 1 3 35 35 H 0.96999 * 119.99997 * 20.14816 * 7 5 3 36 36 H 1.09002 * 109.46872 * 179.97438 * 14 13 12 37 37 H 1.09010 * 109.46688 * 59.99935 * 15 14 13 38 38 H 1.09000 * 109.46897 * 180.02562 * 15 14 13 39 39 H 1.08996 * 109.47407 * 300.00490 * 15 14 13 40 40 H 1.08999 * 109.47527 * 299.99879 * 16 14 13 41 41 H 1.09007 * 109.47333 * 59.99936 * 16 14 13 42 42 H 1.09000 * 109.47257 * 179.97438 * 16 14 13 43 43 H 1.08996 * 109.47156 * 270.02118 * 18 17 13 44 44 H 1.08999 * 109.47033 * 30.02291 * 18 17 13 45 45 H 1.09000 * 109.47195 * 150.02345 * 18 17 13 46 46 H 1.09002 * 111.00745 * 277.23613 * 19 5 3 47 47 H 1.08999 * 111.00898 * 153.38248 * 19 5 3 48 48 H 1.08994 * 110.37521 * 204.15457 * 20 19 5 49 49 H 1.09001 * 110.36641 * 81.82751 * 20 19 5 50 50 H 0.97005 * 119.99781 * 180.27616 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5241 2.0202 -0.7670 5 6 3.5605 1.4646 -0.2638 6 1 4.0112 0.5088 0.0032 7 7 3.8422 1.7956 -1.6629 8 6 5.0360 1.4798 -2.2028 9 8 5.8790 0.9197 -1.5290 10 6 5.3199 1.8136 -3.6115 11 7 4.4748 2.4236 -4.4600 12 7 5.0429 2.5633 -5.6069 13 7 6.3304 2.0131 -5.5322 14 6 7.3188 1.9535 -6.6120 15 6 6.7459 1.1544 -7.7842 16 6 7.6526 3.3725 -7.0767 17 6 6.4840 1.5495 -4.2756 18 6 7.7056 0.8708 -3.7118 19 6 4.0624 2.5903 0.6785 20 6 3.1229 2.4173 1.8979 21 7 1.8171 2.0517 1.3194 22 6 0.5989 2.2424 1.9148 23 1 -0.1238 1.4400 1.9354 24 6 0.2926 3.4672 2.4920 25 7 -0.7577 3.5805 3.2770 26 14 1.3668 4.9563 2.1483 27 1 2.4085 5.0688 3.2006 28 1 2.0172 4.8020 0.8222 29 1 0.5284 6.1821 2.1486 30 1 -0.3633 -0.9569 -0.3749 31 1 -0.3634 0.1538 1.0161 32 1 -0.3633 0.8030 -0.6414 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.1695 2.2421 -2.2005 36 1 8.2246 1.4679 -6.2490 37 1 5.8401 1.6405 -8.1471 38 1 7.4815 1.1097 -8.5874 39 1 6.5080 0.1436 -7.4532 40 1 6.7470 3.8585 -7.4396 41 1 8.0608 3.9418 -6.2415 42 1 8.3883 3.3282 -7.8798 43 1 7.6278 -0.2052 -3.8673 44 1 8.5956 1.2474 -4.2158 45 1 7.7770 1.0794 -2.6443 46 1 3.9313 3.5707 0.2204 47 1 5.1027 2.4288 0.9607 48 1 3.0438 3.3527 2.4518 49 1 3.4866 1.6207 2.5470 50 1 -0.9740 4.4373 3.6771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087778156.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:18 Heat of formation + Delta-G solvation = 50.572826 kcal Electronic energy + Delta-G solvation = -29854.598569 eV Core-core repulsion = 25918.463683 eV Total energy + Delta-G solvation = -3936.134886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.34635 -40.91338 -39.32865 -37.37034 -35.63565 -34.27022 -33.98868 -33.87500 -32.11944 -30.97713 -29.05133 -28.36713 -28.28150 -26.22060 -25.02102 -24.19175 -23.57892 -22.05781 -21.65958 -21.26541 -20.74709 -18.87379 -18.69232 -17.99190 -17.37465 -17.25244 -16.74180 -16.04247 -15.70472 -15.66324 -15.52428 -15.24891 -15.05574 -14.47315 -14.40713 -14.26506 -14.08209 -14.01936 -13.96093 -13.77058 -13.51381 -13.24525 -13.20176 -13.14787 -12.99786 -12.96130 -12.67928 -12.53365 -12.41800 -12.33708 -12.18242 -11.93759 -11.86337 -11.73704 -11.49801 -11.24769 -11.16458 -11.08177 -10.64364 -10.29221 -9.95695 -8.53846 -8.13528 -5.70410 0.12100 0.60576 1.05031 1.30395 1.39171 1.51378 2.06248 2.21539 2.43190 3.09428 3.14543 3.27808 3.39652 3.55949 3.68421 3.75181 3.80781 3.84437 3.97817 4.11521 4.13636 4.30921 4.41761 4.45807 4.54044 4.61217 4.61942 4.63576 4.64646 4.72658 4.74007 4.74903 4.86308 4.87025 4.92623 5.01659 5.10675 5.14001 5.17877 5.21117 5.22675 5.24215 5.38308 5.53824 5.56717 5.61453 5.99148 6.37453 6.41843 6.88059 6.90643 7.12546 7.54475 8.26096 9.01307 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.018653 B = 0.002762 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.766691 B =10133.357779 C =10407.703646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.116 4.116 3 C 0.151 3.849 4 H 0.039 0.961 5 C 0.153 3.847 6 H 0.103 0.897 7 N -0.700 5.700 8 C 0.609 3.391 9 O -0.554 6.554 10 C -0.132 4.132 11 N -0.228 5.228 12 N -0.086 5.086 13 N -0.346 5.346 14 C 0.132 3.868 15 C -0.159 4.159 16 C -0.161 4.161 17 C 0.133 3.867 18 C -0.094 4.094 19 C -0.136 4.136 20 C 0.114 3.886 21 N -0.613 5.613 22 C -0.234 4.234 23 H 0.068 0.932 24 C -0.014 4.014 25 N -0.950 5.950 26 Si 0.942 3.058 27 H -0.280 1.280 28 H -0.258 1.258 29 H -0.310 1.310 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.409 0.591 36 H 0.144 0.856 37 H 0.055 0.945 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.028 0.972 49 H 0.043 0.957 50 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.348 -6.017 -23.676 33.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.155 4.155 3 C 0.045 3.955 4 H 0.057 0.943 5 C 0.047 3.953 6 H 0.121 0.879 7 N -0.350 5.350 8 C 0.394 3.606 9 O -0.432 6.432 10 C -0.272 4.272 11 N -0.101 5.101 12 N -0.066 5.066 13 N -0.133 5.133 14 C 0.033 3.967 15 C -0.217 4.217 16 C -0.218 4.218 17 C -0.006 4.006 18 C -0.152 4.152 19 C -0.175 4.175 20 C -0.011 4.011 21 N -0.340 5.340 22 C -0.364 4.364 23 H 0.085 0.915 24 C -0.211 4.211 25 N -0.595 5.595 26 Si 0.771 3.229 27 H -0.207 1.207 28 H -0.182 1.182 29 H -0.239 1.239 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.060 0.940 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.245 0.755 36 H 0.161 0.839 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.128 0.872 45 H 0.115 0.885 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.757 -5.588 -24.030 33.564 hybrid contribution -0.126 0.991 0.739 1.243 sum 22.631 -4.596 -23.292 32.799 Atomic orbital electron populations 1.21760 0.96112 1.00390 1.01321 1.21816 0.96205 0.96385 1.01127 1.21410 0.92099 0.93872 0.88114 0.94344 1.21833 0.95043 0.98647 0.79742 0.87881 1.45761 1.16350 1.60320 1.12530 1.16842 0.81906 0.77791 0.84048 1.90729 1.46393 1.44005 1.62099 1.21231 0.94549 1.14528 0.96907 1.74610 1.25938 1.11281 0.98299 1.81835 0.90304 1.19707 1.14728 1.50987 1.13460 1.39149 1.09654 1.22207 0.89103 1.00178 0.85257 1.22162 1.02951 0.99399 0.97184 1.22175 1.03289 0.93320 1.03041 1.22364 0.98309 0.95077 0.84863 1.20850 0.90251 1.00932 1.03150 1.23122 0.99685 0.98648 0.96076 1.21975 0.86256 0.97739 0.95114 1.44587 1.01132 1.72982 1.15343 1.18690 0.91759 0.95554 1.30354 0.91502 1.26298 0.96850 1.00063 0.97910 1.69895 1.30191 1.25704 1.33669 0.85804 0.78106 0.79441 0.79514 1.20661 1.18210 1.23872 0.92216 0.93955 0.94043 0.90970 0.92674 0.75450 0.83855 0.92598 0.86867 0.92212 0.92616 0.92346 0.86840 0.87530 0.87220 0.88544 0.92092 0.89014 0.95347 0.93955 0.92845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 9.12 71.98 0.66 -4.51 16 2 C -0.12 -4.09 5.40 30.59 0.17 -3.93 16 3 C 0.15 5.85 2.93 45.34 0.13 5.99 16 4 H 0.04 1.57 7.44 -2.38 -0.02 1.55 16 5 C 0.15 5.11 2.75 46.18 0.13 5.23 16 6 H 0.10 3.39 7.40 -2.39 -0.02 3.37 16 7 N -0.70 -21.37 5.20 -440.08 -2.29 -23.66 16 8 C 0.61 17.98 7.82 86.69 0.68 18.66 16 9 O -0.55 -17.42 14.44 -4.01 -0.06 -17.48 16 10 C -0.13 -3.52 6.99 40.82 0.29 -3.23 16 11 N -0.23 -6.59 12.04 -50.00 -0.60 -7.19 16 12 N -0.09 -2.19 13.67 37.02 0.51 -1.68 16 13 N -0.35 -6.02 3.28 -313.39 -1.03 -7.05 16 14 C 0.13 1.02 3.68 44.99 0.17 1.18 16 15 C -0.16 -1.05 9.47 71.98 0.68 -0.37 16 16 C -0.16 -1.10 9.47 71.98 0.68 -0.42 16 17 C 0.13 2.59 7.02 41.72 0.29 2.88 16 18 C -0.09 -1.11 9.41 71.24 0.67 -0.44 16 19 C -0.14 -4.82 6.77 31.98 0.22 -4.61 16 20 C 0.11 4.80 6.25 86.86 0.54 5.35 16 21 N -0.61 -28.75 2.47 -668.23 -1.65 -30.40 16 22 C -0.23 -13.09 9.56 84.03 0.80 -12.29 16 23 H 0.07 4.02 5.24 -2.91 -0.02 4.01 16 24 C -0.01 -0.84 5.48 84.86 0.46 -0.38 16 25 N -0.95 -59.60 13.97 21.65 0.30 -59.30 16 26 Si 0.94 47.54 25.12 68.60 1.72 49.26 16 27 H -0.28 -13.67 6.83 99.48 0.68 -12.99 16 28 H -0.26 -12.49 6.93 99.48 0.69 -11.80 16 29 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 30 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 31 H 0.04 1.85 5.53 -2.39 -0.01 1.83 16 32 H 0.04 1.59 7.79 -2.39 -0.02 1.57 16 33 H 0.07 2.17 8.12 -2.39 -0.02 2.15 16 34 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.41 12.31 8.00 -92.71 -0.74 11.57 16 36 H 0.14 0.17 6.79 -2.39 -0.02 0.15 16 37 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 38 H 0.11 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.06 0.49 8.14 -2.38 -0.02 0.48 16 42 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.11 0.47 7.18 -2.39 -0.02 0.46 16 45 H 0.10 1.59 6.43 -2.39 -0.02 1.58 16 46 H 0.06 2.26 7.97 -2.39 -0.02 2.24 16 47 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 48 H 0.03 1.30 4.21 -2.39 -0.01 1.29 16 49 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 50 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 Total: -1.00 -73.69 393.15 3.64 -70.05 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: 0.17 Total: 18.32 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 6.56 Total: 9.12 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -4.76 Total: -129.29 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.06 Total: -17.48 kcal Atomic # 14 Polarization: 47.54 SS G_CDS: 1.72 Total: 49.26 kcal Total: -73.69 3.64 -70.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087778156.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.627 kcal (2) G-P(sol) polarization free energy of solvation -73.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds