Wall clock time and date at job start Tue Mar 31 2020 18:58:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.34814 * 126.59927 * 85.00403 * 4 2 1 6 6 C 1.36588 * 106.84295 * 179.97438 * 5 4 2 7 7 C 1.47524 * 125.77250 * 180.02562 * 6 5 4 8 8 O 1.21594 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00111 * 179.97438 * 7 6 5 10 10 C 1.46957 * 120.35521 * 0.02562 * 9 7 6 11 11 C 1.52340 * 109.08671 * 68.37621 * 10 9 7 12 12 C 1.53798 * 109.16334 * 72.70583 * 11 10 9 13 13 C 1.52449 * 109.42107 * 282.12463 * 12 11 10 14 14 C 1.53967 * 110.73289 * 113.72743 * 13 12 11 15 15 C 1.52875 * 109.71739 * 315.65405 * 14 13 12 16 16 H 1.09006 * 109.48417 * 47.08239 * 15 14 13 17 17 N 1.46503 * 109.48255 * 167.11007 * 15 14 13 18 18 C 1.36939 * 120.00079 * 204.99383 * 17 15 14 19 19 H 1.08004 * 120.00026 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99897 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47196 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47138 * 120.00409 * 22 20 18 25 25 H 1.48501 * 109.47412 * 240.00344 * 22 20 18 26 26 C 1.45338 * 120.35348 * 179.72415 * 9 7 6 27 27 N 1.34405 * 108.46204 * 359.97438 * 6 5 4 28 28 N 1.28766 * 109.51706 * 359.75323 * 27 6 5 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.07999 * 126.57748 * 359.93306 * 5 4 2 37 37 H 1.09001 * 109.53742 * 188.25972 * 10 9 7 38 38 H 1.08998 * 109.53132 * 308.49472 * 10 9 7 39 39 H 1.09007 * 109.52080 * 192.61160 * 11 10 9 40 40 H 1.09000 * 109.52253 * 312.79648 * 11 10 9 41 41 H 1.08996 * 109.48235 * 42.11092 * 12 11 10 42 42 H 1.09000 * 109.47676 * 162.13115 * 12 11 10 43 43 H 1.08998 * 109.22403 * 234.05699 * 13 12 11 44 44 H 1.09005 * 109.22302 * 353.41184 * 13 12 11 45 45 H 1.09001 * 109.42514 * 75.72587 * 14 13 12 46 46 H 1.08995 * 109.43281 * 195.56913 * 14 13 12 47 47 H 0.97001 * 119.99747 * 24.99734 * 17 15 14 48 48 H 0.96998 * 120.00266 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.67796 * 343.07533 * 26 9 7 50 50 H 1.08995 * 109.67632 * 103.61727 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1973 -0.1513 -2.4188 6 6 2.6642 -1.1487 -3.2268 7 6 3.0017 -1.0135 -4.6565 8 8 2.8702 0.0594 -5.2134 9 7 3.4557 -2.0792 -5.3455 10 6 3.6170 -3.3797 -4.6804 11 6 2.2420 -3.9328 -4.3278 12 6 1.5419 -4.4027 -5.6140 13 6 0.9948 -3.1936 -6.3641 14 6 1.7301 -3.0046 -7.7036 15 6 3.2346 -3.1778 -7.4949 16 1 3.4189 -4.0751 -6.9042 17 7 3.8969 -3.3045 -8.7956 18 6 5.0969 -3.9571 -8.8922 19 1 5.5549 -4.3788 -8.0096 20 6 5.7241 -4.0776 -10.1246 21 7 5.1657 -3.5642 -11.2003 22 14 7.3606 -4.9685 -10.2566 23 1 7.7717 -5.4502 -8.9134 24 1 7.2213 -6.1263 -11.1760 25 1 8.3898 -4.0376 -10.7854 26 6 3.7848 -1.9561 -6.7557 27 7 2.7652 -2.2740 -2.4988 28 7 2.3956 -2.0378 -1.2881 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 2.0073 0.8727 -2.7046 37 1 4.1271 -4.0712 -5.3510 38 1 4.2034 -3.2533 -3.7703 39 1 2.3525 -4.7750 -3.6446 40 1 1.6465 -3.1530 -3.8529 41 1 2.2573 -4.9292 -6.2457 42 1 0.7216 -5.0730 -5.3571 43 1 -0.0681 -3.3409 -6.5557 44 1 1.1283 -2.3013 -5.7525 45 1 1.3756 -3.7462 -8.4195 46 1 1.5301 -2.0050 -8.0892 47 1 3.4854 -2.9260 -9.5883 48 1 5.6042 -3.6481 -12.0614 49 1 3.3341 -1.0496 -7.1601 50 1 4.8671 -1.9143 -6.8778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088406075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:30 Heat of formation + Delta-G solvation = 93.207623 kcal Electronic energy + Delta-G solvation = -30697.345840 eV Core-core repulsion = 26763.059738 eV Total energy + Delta-G solvation = -3934.286103 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.43159 -39.95185 -37.47597 -36.84956 -34.77699 -33.68954 -32.29142 -31.69751 -30.82612 -29.80332 -28.01146 -27.13948 -26.13674 -24.56264 -23.92083 -22.93442 -22.21376 -21.30637 -21.02998 -19.76411 -18.61495 -17.54878 -17.14508 -16.39153 -16.10628 -16.02894 -15.48442 -15.21191 -14.87659 -14.48398 -14.20975 -14.09246 -13.80520 -13.62497 -13.47326 -13.18498 -13.10518 -12.92800 -12.79886 -12.42423 -12.28618 -12.28066 -12.12403 -11.78822 -11.45387 -11.38198 -11.21778 -10.94956 -10.86420 -10.79639 -10.50571 -10.36632 -10.27621 -10.11844 -10.07112 -9.80626 -9.67405 -9.54465 -9.31184 -8.90377 -8.09376 -6.94619 -5.75444 -3.04656 1.02843 1.74073 1.80485 3.29729 3.44792 3.45970 3.50883 3.52782 3.85821 4.12712 4.17973 4.36756 4.53516 4.61088 4.77486 4.83890 4.92836 5.01664 5.04143 5.08866 5.21922 5.26191 5.28724 5.45038 5.49106 5.51773 5.57742 5.62957 5.67867 5.78729 5.87596 5.99665 6.06568 6.10336 6.21196 6.23841 6.32380 6.36302 6.43335 6.48469 6.58344 6.70739 6.76933 6.89003 6.91237 7.17836 7.71369 7.72872 7.88597 8.41470 8.44622 9.54179 10.11215 10.46049 11.46975 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.002845 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.834895 B = 9838.822115 C =10034.704262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.145 3.855 3 C -0.169 4.169 4 N -0.359 5.359 5 C 0.090 3.910 6 C -0.096 4.096 7 C 0.594 3.406 8 O -0.549 6.549 9 N -0.579 5.579 10 C 0.111 3.889 11 C -0.121 4.121 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.158 3.842 16 H 0.068 0.932 17 N -0.719 5.719 18 C -0.239 4.239 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.089 3.911 27 N -0.191 5.191 28 N -0.077 5.077 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.199 0.801 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.056 0.944 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.081 0.919 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.900 7.484 24.935 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.043 3.957 3 C -0.227 4.227 4 N -0.145 5.145 5 C -0.067 4.067 6 C -0.234 4.234 7 C 0.380 3.620 8 O -0.427 6.427 9 N -0.309 5.309 10 C -0.012 4.012 11 C -0.159 4.159 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.161 4.161 15 C 0.047 3.953 16 H 0.085 0.915 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.736 3.264 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.036 4.036 27 N -0.064 5.064 28 N -0.057 5.057 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.131 0.869 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.216 0.784 37 H 0.107 0.893 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.099 0.901 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.651 6.623 25.414 28.341 hybrid contribution 0.636 0.703 -0.786 1.231 sum -10.016 7.326 24.629 27.578 Atomic orbital electron populations 1.22256 0.92596 1.03842 1.03763 1.21591 0.95595 0.93367 0.85130 1.22267 1.02712 0.93430 1.04335 1.50696 1.44906 1.09917 1.08987 1.23214 0.97786 1.01050 0.84634 1.21559 1.14054 0.90314 0.97500 1.16768 0.77740 0.84184 0.83316 1.90781 1.55655 1.26823 1.69411 1.47713 1.62611 1.09406 1.11206 1.21749 0.97755 0.84230 0.97480 1.22104 0.96503 1.00690 0.96626 1.21922 1.00250 0.97786 0.96905 1.21634 0.98443 0.98179 0.96769 1.22017 0.96079 1.01483 0.96526 1.20842 0.90348 0.95287 0.88812 0.91467 1.42427 1.23387 1.66726 1.03440 1.19265 0.96641 1.27575 0.93580 0.91093 1.24746 0.98998 1.01415 0.95650 1.69674 1.39526 1.50161 0.98479 0.86148 0.83816 0.78992 0.77417 1.20503 1.21909 1.21904 1.22585 1.01085 1.02236 0.77686 1.75014 1.10851 1.22508 0.98072 1.81998 1.18815 0.91891 1.12969 0.91214 0.89802 0.91443 0.86931 0.89387 0.91095 0.91022 0.78439 0.89275 0.90380 0.91247 0.91274 0.90391 0.92858 0.93279 0.92516 0.91778 0.92494 0.78131 0.93541 0.90096 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 9.52 37.16 0.35 -0.33 16 2 C 0.14 0.74 3.96 -67.93 -0.27 0.47 16 3 C -0.17 -0.57 8.85 37.16 0.33 -0.25 16 4 N -0.36 -3.31 3.54 -54.56 -0.19 -3.51 16 5 C 0.09 0.94 10.40 -16.84 -0.18 0.77 16 6 C -0.10 -1.32 5.92 -83.55 -0.49 -1.81 16 7 C 0.59 9.90 6.25 -12.48 -0.08 9.82 16 8 O -0.55 -10.47 16.30 5.28 0.09 -10.38 16 9 N -0.58 -9.65 1.69 -175.86 -0.30 -9.95 16 10 C 0.11 1.64 4.89 -4.13 -0.02 1.62 16 11 C -0.12 -1.63 4.40 -26.65 -0.12 -1.75 16 12 C -0.13 -1.85 5.49 -26.60 -0.15 -2.00 16 13 C -0.11 -1.71 5.40 -26.51 -0.14 -1.85 16 14 C -0.12 -2.17 5.21 -26.29 -0.14 -2.31 16 15 C 0.16 3.12 2.29 -67.98 -0.16 2.97 16 16 H 0.07 1.32 3.29 -51.93 -0.17 1.15 16 17 N -0.72 -17.83 5.13 -53.47 -0.27 -18.10 16 18 C -0.24 -6.51 9.88 -15.06 -0.15 -6.66 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 21 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 22 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.09 1.72 5.57 -4.65 -0.03 1.69 16 27 N -0.19 -2.58 6.78 32.85 0.22 -2.36 16 28 N -0.08 -0.95 13.78 60.35 0.83 -0.12 16 29 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 34 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.24 7.23 -51.93 -0.38 -0.14 16 36 H 0.20 1.59 7.34 -52.49 -0.39 1.20 16 37 H 0.09 1.38 6.07 -51.93 -0.32 1.06 16 38 H 0.08 1.12 6.66 -51.93 -0.35 0.78 16 39 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 40 H 0.07 0.99 4.71 -51.93 -0.24 0.75 16 41 H 0.08 1.21 5.47 -51.93 -0.28 0.93 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.92 5.38 -51.93 -0.28 0.64 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.03 7.85 -51.93 -0.41 0.62 16 47 H 0.38 10.25 7.80 -40.82 -0.32 9.94 16 48 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 49 H 0.08 1.67 6.77 -51.93 -0.35 1.32 16 50 H 0.07 1.48 8.08 -51.93 -0.42 1.06 16 LS Contribution 378.89 15.07 5.71 5.71 Total: -1.00 -32.75 378.89 -7.21 -39.96 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -7.67 Total: 8.81 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: -1.32 Total: -0.07 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 1.01 Total: -61.33 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.75 -7.21 -39.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088406075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.164 kcal (2) G-P(sol) polarization free energy of solvation -32.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.956 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds