Wall clock time and date at job start Tue Mar 31 2020 18:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 N 1.46499 * 109.46799 * 240.00475 * 2 1 3 5 5 C 1.34814 * 126.59927 * 85.00403 * 4 2 1 6 6 C 1.36588 * 106.84295 * 179.97438 * 5 4 2 7 7 C 1.47524 * 125.77250 * 180.02562 * 6 5 4 8 8 O 1.21594 * 120.00038 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00111 * 179.97438 * 7 6 5 10 10 C 1.46957 * 120.35521 * 0.02562 * 9 7 6 11 11 C 1.52340 * 109.08671 * 68.37621 * 10 9 7 12 12 C 1.53798 * 109.16334 * 72.70583 * 11 10 9 13 13 C 1.52449 * 109.42107 * 282.12463 * 12 11 10 14 14 C 1.53967 * 110.73289 * 113.72743 * 13 12 11 15 15 C 1.52875 * 109.71739 * 315.65405 * 14 13 12 16 16 H 1.09006 * 109.48417 * 47.08239 * 15 14 13 17 17 N 1.46503 * 109.48255 * 167.11007 * 15 14 13 18 18 C 1.36939 * 120.00079 * 204.99383 * 17 15 14 19 19 H 1.08004 * 120.00026 * 0.02562 * 18 17 15 20 20 C 1.38809 * 119.99897 * 179.97438 * 18 17 15 21 21 N 1.31620 * 120.00240 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99936 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47196 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47138 * 120.00409 * 22 20 18 25 25 H 1.48501 * 109.47412 * 240.00344 * 22 20 18 26 26 C 1.45338 * 120.35348 * 179.72415 * 9 7 6 27 27 N 1.34405 * 108.46204 * 359.97438 * 6 5 4 28 28 N 1.28766 * 109.51706 * 359.75323 * 27 6 5 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 31 31 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 32 32 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 33 33 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 34 34 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 35 35 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 36 36 H 1.07999 * 126.57748 * 359.93306 * 5 4 2 37 37 H 1.09001 * 109.53742 * 188.25972 * 10 9 7 38 38 H 1.08998 * 109.53132 * 308.49472 * 10 9 7 39 39 H 1.09007 * 109.52080 * 192.61160 * 11 10 9 40 40 H 1.09000 * 109.52253 * 312.79648 * 11 10 9 41 41 H 1.08996 * 109.48235 * 42.11092 * 12 11 10 42 42 H 1.09000 * 109.47676 * 162.13115 * 12 11 10 43 43 H 1.08998 * 109.22403 * 234.05699 * 13 12 11 44 44 H 1.09005 * 109.22302 * 353.41184 * 13 12 11 45 45 H 1.09001 * 109.42514 * 75.72587 * 14 13 12 46 46 H 1.08995 * 109.43281 * 195.56913 * 14 13 12 47 47 H 0.97001 * 119.99747 * 24.99734 * 17 15 14 48 48 H 0.96998 * 120.00266 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.67796 * 343.07533 * 26 9 7 50 50 H 1.08995 * 109.67632 * 103.61727 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1973 -0.1513 -2.4188 6 6 2.6642 -1.1487 -3.2268 7 6 3.0017 -1.0135 -4.6565 8 8 2.8702 0.0594 -5.2134 9 7 3.4557 -2.0792 -5.3455 10 6 3.6170 -3.3797 -4.6804 11 6 2.2420 -3.9328 -4.3278 12 6 1.5419 -4.4027 -5.6140 13 6 0.9948 -3.1936 -6.3641 14 6 1.7301 -3.0046 -7.7036 15 6 3.2346 -3.1778 -7.4949 16 1 3.4189 -4.0751 -6.9042 17 7 3.8969 -3.3045 -8.7956 18 6 5.0969 -3.9571 -8.8922 19 1 5.5549 -4.3788 -8.0096 20 6 5.7241 -4.0776 -10.1246 21 7 5.1657 -3.5642 -11.2003 22 14 7.3606 -4.9685 -10.2566 23 1 7.7717 -5.4502 -8.9134 24 1 7.2213 -6.1263 -11.1760 25 1 8.3898 -4.0376 -10.7854 26 6 3.7848 -1.9561 -6.7557 27 7 2.7652 -2.2740 -2.4988 28 7 2.3956 -2.0378 -1.2881 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 1.6768 1.9562 0.8901 34 1 3.1301 1.4425 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 2.0073 0.8727 -2.7046 37 1 4.1271 -4.0712 -5.3510 38 1 4.2034 -3.2533 -3.7703 39 1 2.3525 -4.7750 -3.6446 40 1 1.6465 -3.1530 -3.8529 41 1 2.2573 -4.9292 -6.2457 42 1 0.7216 -5.0730 -5.3571 43 1 -0.0681 -3.3409 -6.5557 44 1 1.1283 -2.3013 -5.7525 45 1 1.3756 -3.7462 -8.4195 46 1 1.5301 -2.0050 -8.0892 47 1 3.4854 -2.9260 -9.5883 48 1 5.6042 -3.6481 -12.0614 49 1 3.3341 -1.0496 -7.1601 50 1 4.8671 -1.9143 -6.8778 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088406075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:28 Heat of formation + Delta-G solvation = 72.830862 kcal Electronic energy + Delta-G solvation = -30698.229443 eV Core-core repulsion = 26763.059738 eV Total energy + Delta-G solvation = -3935.169705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.34931 -41.27922 -38.88979 -37.45833 -36.42833 -35.07025 -34.02141 -32.46949 -31.93555 -31.42898 -28.70632 -28.26331 -27.50158 -25.97696 -25.01617 -24.32704 -23.41169 -22.68597 -21.75153 -20.96189 -19.92685 -19.18615 -18.52060 -17.75327 -17.08428 -17.02147 -16.87095 -16.35148 -15.89664 -15.70838 -15.49817 -15.26842 -15.14115 -15.00532 -14.72422 -14.30132 -14.22037 -13.84193 -13.72126 -13.54646 -13.27251 -13.19634 -13.02425 -12.98312 -12.76616 -12.67411 -12.56396 -12.32040 -12.13859 -12.08633 -11.97226 -11.77453 -11.74243 -11.54289 -11.44620 -11.24329 -11.13607 -11.06037 -10.78323 -10.28868 -9.53412 -8.97838 -7.92249 -5.21558 0.17577 0.66501 1.10946 1.48897 1.49499 1.59296 2.00582 2.23921 2.58263 3.14292 3.35009 3.41227 3.64381 3.79015 3.82173 3.89264 3.96708 4.02958 4.06213 4.14029 4.24038 4.25963 4.33838 4.41576 4.51340 4.57465 4.62338 4.65068 4.66857 4.77604 4.78226 4.87721 4.88179 4.93640 5.00048 5.04676 5.18079 5.21295 5.25390 5.25805 5.33540 5.41487 5.43738 5.48242 5.54474 5.58312 5.73227 6.29011 6.41613 6.89935 7.14363 7.35478 8.08770 8.33173 9.31387 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.021323 B = 0.002845 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.834895 B = 9838.822115 C =10034.704262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.135 3.865 3 C -0.166 4.166 4 N -0.343 5.343 5 C 0.107 3.893 6 C -0.123 4.123 7 C 0.595 3.405 8 O -0.580 6.580 9 N -0.580 5.580 10 C 0.113 3.887 11 C -0.110 4.110 12 C -0.128 4.128 13 C -0.103 4.103 14 C -0.116 4.116 15 C 0.160 3.840 16 H 0.076 0.924 17 N -0.732 5.732 18 C -0.234 4.234 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.969 5.969 22 Si 0.969 3.031 23 H -0.264 1.264 24 H -0.294 1.294 25 H -0.297 1.297 26 C 0.106 3.894 27 N -0.202 5.202 28 N -0.091 5.091 29 H 0.055 0.945 30 H 0.111 0.889 31 H 0.064 0.936 32 H 0.123 0.877 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.074 0.926 36 H 0.223 0.777 37 H 0.080 0.920 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.074 0.926 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.057 0.943 46 H 0.047 0.953 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.064 0.936 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.817 7.513 28.180 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.036 3.964 3 C -0.224 4.224 4 N -0.129 5.129 5 C -0.051 4.051 6 C -0.261 4.261 7 C 0.383 3.617 8 O -0.460 6.460 9 N -0.310 5.310 10 C -0.009 4.009 11 C -0.148 4.148 12 C -0.165 4.165 13 C -0.142 4.142 14 C -0.154 4.154 15 C 0.051 3.949 16 H 0.094 0.906 17 N -0.371 5.371 18 C -0.366 4.366 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.620 5.620 22 Si 0.799 3.201 23 H -0.188 1.188 24 H -0.221 1.221 25 H -0.225 1.225 26 C -0.020 4.020 27 N -0.076 5.076 28 N -0.070 5.070 29 H 0.074 0.926 30 H 0.129 0.871 31 H 0.083 0.917 32 H 0.141 0.859 33 H 0.132 0.868 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.239 0.761 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.066 0.934 47 H 0.204 0.796 48 H 0.059 0.941 49 H 0.082 0.918 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.587 6.632 28.760 31.708 hybrid contribution 0.833 0.792 -1.612 1.980 sum -10.754 7.425 27.149 30.130 Atomic orbital electron populations 1.22256 0.91458 1.03290 1.05005 1.22078 0.96419 0.94187 0.83736 1.22299 1.02160 0.92170 1.05795 1.51034 1.43191 1.08979 1.09677 1.23513 0.95771 1.01350 0.84433 1.21229 1.16799 0.91822 0.96291 1.17093 0.76760 0.83392 0.84455 1.90754 1.56935 1.27850 1.70444 1.47656 1.62854 1.10511 1.10027 1.21835 0.98835 0.83056 0.97189 1.22013 0.95279 1.01021 0.96500 1.21891 1.00618 0.97321 0.96680 1.21573 0.99127 0.98463 0.94999 1.21921 0.94694 1.00736 0.98075 1.20988 0.91382 0.95663 0.86844 0.90629 1.42615 1.23117 1.66523 1.04809 1.19630 0.97053 1.26251 0.93626 0.90350 1.25535 1.02517 1.03119 0.95559 1.69829 1.41115 1.52302 0.98767 0.85129 0.79713 0.77464 0.77816 1.18799 1.22120 1.22455 1.22070 0.99167 1.01047 0.79689 1.74957 1.11360 1.22776 0.98468 1.81915 1.19178 0.93556 1.12376 0.92624 0.87073 0.91710 0.85881 0.86815 0.91956 0.90730 0.76066 0.90152 0.89728 0.89550 0.91527 0.91811 0.90737 0.91517 0.93346 0.92384 0.93395 0.79603 0.94123 0.91788 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 9.52 71.98 0.69 -0.17 16 2 C 0.14 0.99 3.96 44.99 0.18 1.17 16 3 C -0.17 -0.59 8.85 71.98 0.64 0.05 16 4 N -0.34 -5.56 3.54 -326.54 -1.16 -6.71 16 5 C 0.11 2.05 10.40 83.85 0.87 2.93 16 6 C -0.12 -3.25 5.92 40.81 0.24 -3.01 16 7 C 0.60 19.82 6.25 86.69 0.54 20.36 16 8 O -0.58 -22.39 16.30 -4.01 -0.07 -22.46 16 9 N -0.58 -19.52 1.69 -828.55 -1.40 -20.92 16 10 C 0.11 3.27 4.89 86.07 0.42 3.69 16 11 C -0.11 -2.79 4.40 30.64 0.13 -2.65 16 12 C -0.13 -3.39 5.49 30.68 0.17 -3.22 16 13 C -0.10 -3.05 5.40 30.74 0.17 -2.88 16 14 C -0.12 -4.15 5.21 30.88 0.16 -3.99 16 15 C 0.16 6.47 2.29 44.96 0.10 6.57 16 16 H 0.08 2.97 3.29 -2.38 -0.01 2.97 16 17 N -0.73 -37.28 5.13 -323.09 -1.66 -38.93 16 18 C -0.23 -12.90 9.88 84.03 0.83 -12.07 16 19 H 0.08 4.13 7.83 -2.91 -0.02 4.10 16 20 C -0.08 -4.33 5.50 84.86 0.47 -3.87 16 21 N -0.97 -59.98 13.06 21.65 0.28 -59.69 16 22 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 23 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 24 H -0.29 -14.09 7.11 99.48 0.71 -13.39 16 25 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 26 C 0.11 4.25 5.57 86.61 0.48 4.73 16 27 N -0.20 -5.19 6.78 -50.00 -0.34 -5.53 16 28 N -0.09 -2.05 13.78 37.02 0.51 -1.54 16 29 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.11 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 34 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.07 0.25 7.23 -2.39 -0.02 0.23 16 36 H 0.22 3.03 7.34 -2.91 -0.02 3.01 16 37 H 0.08 2.46 6.07 -2.39 -0.01 2.44 16 38 H 0.08 2.37 6.66 -2.39 -0.02 2.35 16 39 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 40 H 0.07 1.80 4.71 -2.39 -0.01 1.78 16 41 H 0.06 1.90 5.47 -2.39 -0.01 1.89 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 44 H 0.05 1.52 5.38 -2.38 -0.01 1.51 16 45 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 46 H 0.05 1.78 7.85 -2.39 -0.02 1.76 16 47 H 0.37 20.62 7.80 -92.71 -0.72 19.90 16 48 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.06 2.77 6.77 -2.39 -0.02 2.75 16 50 H 0.04 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -72.26 378.89 4.53 -67.73 By element: Atomic # 1 Polarization: 31.64 SS G_CDS: 0.24 Total: 31.88 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: 6.09 Total: 7.64 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -3.76 Total: -133.33 kcal Atomic # 8 Polarization: -22.39 SS G_CDS: -0.07 Total: -22.46 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -72.26 4.53 -67.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088406075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.558 kcal (2) G-P(sol) polarization free energy of solvation -72.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds