Wall clock time and date at job start Tue Mar 31 2020 18:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 N 1.46501 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59361 * 125.00261 * 4 3 2 6 6 C 1.36595 * 106.83754 * 180.02562 * 5 4 3 7 7 C 1.47531 * 125.76852 * 179.73649 * 6 5 4 8 8 O 1.21589 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.46965 * 120.35388 * 359.97438 * 9 7 6 11 11 C 1.52338 * 109.08420 * 68.38047 * 10 9 7 12 12 C 1.53808 * 109.16351 * 72.70213 * 11 10 9 13 13 C 1.52441 * 109.42042 * 282.12706 * 12 11 10 14 14 C 1.53965 * 110.73224 * 113.72942 * 13 12 11 15 15 C 1.52884 * 109.71617 * 315.64459 * 14 13 12 16 16 H 1.08999 * 109.47684 * 47.09294 * 15 14 13 17 17 N 1.46504 * 109.47972 * 167.11215 * 15 14 13 18 18 C 1.36937 * 119.99646 * 205.00113 * 17 15 14 19 19 H 1.07994 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99410 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99677 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00287 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47367 * 89.99787 * 22 20 18 24 24 H 1.48506 * 109.47122 * 209.99974 * 22 20 18 25 25 H 1.48497 * 109.47435 * 329.99508 * 22 20 18 26 26 C 1.45338 * 120.35848 * 179.72785 * 9 7 6 27 27 N 1.34401 * 108.46194 * 359.97438 * 6 5 4 28 28 N 1.28757 * 109.51883 * 0.02562 * 27 6 5 29 29 H 1.08998 * 109.47013 * 59.99774 * 1 2 3 30 30 H 1.08993 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46849 * 299.99952 * 1 2 3 32 32 H 1.08998 * 109.46849 * 240.00048 * 2 1 3 33 33 H 1.08998 * 109.47013 * 120.00226 * 2 1 3 34 34 H 1.08998 * 109.47159 * 60.00237 * 3 2 1 35 35 H 1.08998 * 109.47301 * 300.00050 * 3 2 1 36 36 H 1.07995 * 126.58340 * 0.04031 * 5 4 3 37 37 H 1.08998 * 109.53230 * 188.25883 * 10 9 7 38 38 H 1.08992 * 109.53897 * 308.49984 * 10 9 7 39 39 H 1.09004 * 109.52107 * 192.60485 * 11 10 9 40 40 H 1.08995 * 109.52412 * 312.79979 * 11 10 9 41 41 H 1.09005 * 109.47774 * 42.11397 * 12 11 10 42 42 H 1.09004 * 109.47574 * 162.13224 * 12 11 10 43 43 H 1.09001 * 109.22576 * 234.04982 * 13 12 11 44 44 H 1.09001 * 109.22549 * 353.40677 * 13 12 11 45 45 H 1.08998 * 109.43527 * 75.72192 * 14 13 12 46 46 H 1.08999 * 109.43410 * 195.57360 * 14 13 12 47 47 H 0.97002 * 120.00110 * 25.00551 * 17 15 14 48 48 H 0.97001 * 120.00048 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.67085 * 343.07221 * 26 9 7 50 50 H 1.08991 * 109.68348 * 103.60590 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3084 2.0634 -0.8874 6 6 5.5941 1.7980 -0.5102 7 6 6.8100 2.2724 -1.1979 8 8 6.7147 2.9644 -2.1932 9 7 8.0264 1.9397 -0.7225 10 6 8.1506 1.1051 0.4808 11 6 7.6613 -0.3023 0.1635 12 6 8.6964 -1.0073 -0.7293 13 6 8.5549 -0.5064 -2.1621 14 6 9.8055 0.2833 -2.5894 15 6 10.2225 1.2352 -1.4681 16 1 10.2253 0.6995 -0.5189 17 7 11.5657 1.7529 -1.7409 18 6 12.3551 2.1858 -0.7092 19 1 11.9878 2.1452 0.3056 20 6 13.6275 2.6767 -0.9678 21 7 14.3862 3.0933 0.0239 22 14 14.2625 2.7475 -2.7230 23 1 13.9049 4.0564 -3.3265 24 1 15.7392 2.5898 -2.7220 25 1 13.6485 1.6525 -3.5162 26 6 9.2293 2.3978 -1.3972 27 7 5.5642 1.0273 0.5905 28 7 4.3413 0.7964 0.9209 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9955 2.6570 -1.7336 37 1 9.1946 1.0666 0.7914 38 1 7.5459 1.5290 1.2825 39 1 7.5379 -0.8626 1.0904 40 1 6.7067 -0.2468 -0.3596 41 1 9.7001 -0.7881 -0.3650 42 1 8.5268 -2.0838 -0.7020 43 1 8.4233 -1.3586 -2.8289 44 1 7.6806 0.1409 -2.2313 45 1 10.6196 -0.4111 -2.7970 46 1 9.5821 0.8579 -3.4883 47 1 11.8957 1.7890 -2.6524 48 1 15.2752 3.4368 -0.1568 49 1 8.9808 2.7295 -2.4054 50 1 9.6726 3.2218 -0.8382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088407305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:39 Heat of formation + Delta-G solvation = 94.059461 kcal Electronic energy + Delta-G solvation = -30438.617879 eV Core-core repulsion = 26504.368715 eV Total energy + Delta-G solvation = -3934.249164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.42501 -40.00121 -37.55861 -36.40884 -34.94216 -33.76686 -32.96187 -32.18944 -30.94478 -30.23209 -27.78453 -27.18323 -26.05821 -24.23676 -23.28869 -22.66643 -22.11017 -21.83653 -21.20014 -19.78281 -18.74729 -17.68295 -17.47983 -16.54900 -16.37287 -16.03698 -15.57305 -15.41936 -14.97164 -14.61048 -14.24759 -14.09012 -13.91338 -13.82455 -13.68780 -13.18860 -13.06706 -12.68446 -12.61987 -12.57307 -12.40889 -12.34564 -12.00484 -11.66564 -11.59478 -11.42522 -11.36691 -11.02350 -10.92822 -10.83557 -10.55339 -10.36128 -10.31655 -10.21274 -10.17186 -9.84132 -9.64916 -9.56554 -9.34413 -8.94097 -8.15669 -7.25739 -5.76398 -3.12401 0.99028 1.70455 1.80808 3.24722 3.40181 3.41397 3.43925 3.48172 3.89049 4.10293 4.19124 4.44907 4.56322 4.60690 4.67244 4.80047 4.82222 5.00483 5.01749 5.14230 5.18344 5.21048 5.40245 5.41763 5.43329 5.46257 5.58364 5.60774 5.63190 5.69575 5.73106 5.92491 5.94173 6.02355 6.14828 6.15333 6.25617 6.29154 6.32598 6.40081 6.47818 6.62085 6.70362 6.74795 6.80844 7.07777 7.67369 7.84298 7.99415 8.37342 8.43310 9.20690 9.93434 10.12964 11.41520 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.002692 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.174992 B =10399.459879 C =10533.177622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.122 3.878 4 N -0.365 5.365 5 C 0.088 3.912 6 C -0.096 4.096 7 C 0.596 3.404 8 O -0.549 6.549 9 N -0.579 5.579 10 C 0.110 3.890 11 C -0.121 4.121 12 C -0.132 4.132 13 C -0.111 4.111 14 C -0.126 4.126 15 C 0.161 3.839 16 H 0.076 0.924 17 N -0.744 5.744 18 C -0.245 4.245 19 H 0.091 0.909 20 C 0.006 3.994 21 N -0.932 5.932 22 Si 0.883 3.117 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.276 1.276 26 C 0.089 3.911 27 N -0.189 5.189 28 N -0.074 5.074 29 H 0.058 0.942 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.103 0.897 36 H 0.201 0.799 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.063 0.937 46 H 0.056 0.944 47 H 0.362 0.638 48 H 0.259 0.741 49 H 0.080 0.920 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.619 -7.028 -0.923 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.068 4.068 6 C -0.235 4.235 7 C 0.381 3.619 8 O -0.427 6.427 9 N -0.309 5.309 10 C -0.013 4.013 11 C -0.159 4.159 12 C -0.170 4.170 13 C -0.150 4.150 14 C -0.165 4.165 15 C 0.051 3.949 16 H 0.094 0.906 17 N -0.386 5.386 18 C -0.375 4.375 19 H 0.109 0.891 20 C -0.190 4.190 21 N -0.579 5.579 22 Si 0.714 3.286 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.036 4.036 27 N -0.063 5.063 28 N -0.054 5.054 29 H 0.077 0.923 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.116 0.884 35 H 0.121 0.879 36 H 0.218 0.782 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.195 0.805 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.506 -7.460 0.041 29.466 hybrid contribution 0.347 0.811 -2.105 2.283 sum -28.159 -6.650 -2.064 29.007 Atomic orbital electron populations 1.21705 0.93921 1.02857 1.02310 1.21827 0.96880 0.94635 1.04259 1.22118 0.72815 0.99991 1.05007 1.50517 1.08645 1.35493 1.20301 1.23342 0.90265 0.97252 0.95958 1.21546 0.94623 1.08029 0.99282 1.16751 0.81864 0.80013 0.83257 1.90778 1.86393 1.39537 1.26026 1.47674 1.05334 1.49939 1.27995 1.21775 1.02722 0.90343 0.86451 1.22112 0.98348 0.95377 1.00098 1.21933 1.00574 0.99028 0.95420 1.21622 0.98345 0.98824 0.96182 1.22060 0.97273 0.98469 0.98659 1.20840 0.84473 0.91634 0.97946 0.90619 1.42772 1.12407 1.77097 1.06313 1.19054 0.95222 1.34253 0.88956 0.89118 1.24669 0.96735 1.00842 0.96726 1.69703 1.10278 1.48140 1.29796 0.86563 0.78139 0.77941 0.85978 1.21053 1.21812 1.20254 1.22505 0.83444 0.99516 0.98119 1.75033 1.11854 1.09372 1.10076 1.81983 0.93718 1.17848 1.11851 0.92263 0.91651 0.92090 0.91053 0.89980 0.88445 0.87880 0.78188 0.89068 0.90258 0.91105 0.91253 0.90320 0.92745 0.93174 0.92386 0.91786 0.92492 0.80512 0.93062 0.90125 0.90759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.91 37.16 0.37 -0.05 16 2 C -0.14 -0.62 6.14 -26.73 -0.16 -0.79 16 3 C 0.12 0.55 6.54 -4.04 -0.03 0.53 16 4 N -0.36 -3.22 3.69 -61.07 -0.23 -3.44 16 5 C 0.09 0.88 11.27 -16.84 -0.19 0.69 16 6 C -0.10 -1.29 5.93 -83.55 -0.50 -1.78 16 7 C 0.60 9.63 6.25 -12.47 -0.08 9.55 16 8 O -0.55 -10.15 16.30 5.29 0.09 -10.07 16 9 N -0.58 -9.42 1.69 -175.82 -0.30 -9.72 16 10 C 0.11 1.60 4.89 -4.13 -0.02 1.58 16 11 C -0.12 -1.59 4.40 -26.65 -0.12 -1.71 16 12 C -0.13 -1.80 5.49 -26.60 -0.15 -1.95 16 13 C -0.11 -1.62 5.40 -26.51 -0.14 -1.76 16 14 C -0.13 -2.10 5.21 -26.29 -0.14 -2.24 16 15 C 0.16 3.06 2.29 -67.95 -0.16 2.91 16 16 H 0.08 1.45 3.29 -51.93 -0.17 1.28 16 17 N -0.74 -17.32 4.93 -53.44 -0.26 -17.58 16 18 C -0.25 -6.74 10.36 -15.06 -0.16 -6.90 16 19 H 0.09 2.65 8.06 -52.49 -0.42 2.23 16 20 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 21 N -0.93 -29.00 13.97 55.49 0.78 -28.23 16 22 Si 0.88 22.13 27.74 -169.99 -4.71 17.42 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 26 C 0.09 1.66 5.58 -4.63 -0.03 1.63 16 27 N -0.19 -2.51 6.76 32.85 0.22 -2.28 16 28 N -0.07 -0.88 13.65 60.35 0.82 -0.05 16 29 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 30 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.10 0.22 8.08 -51.93 -0.42 -0.20 16 36 H 0.20 1.43 8.06 -52.49 -0.42 1.01 16 37 H 0.09 1.42 6.07 -51.93 -0.32 1.10 16 38 H 0.08 1.14 6.67 -51.93 -0.35 0.79 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.96 4.70 -51.93 -0.24 0.72 16 41 H 0.08 1.19 5.47 -51.93 -0.28 0.90 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.89 5.38 -51.93 -0.28 0.61 16 45 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 47 H 0.36 8.40 5.66 -40.82 -0.23 8.17 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 49 H 0.08 1.57 6.77 -51.93 -0.35 1.22 16 50 H 0.07 1.55 8.08 -51.93 -0.42 1.13 16 LS Contribution 378.48 15.07 5.70 5.70 Total: -1.00 -33.56 378.48 -7.18 -40.74 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -7.71 Total: 7.71 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: -1.58 Total: -0.19 kcal Atomic # 7 Polarization: -62.35 SS G_CDS: 1.03 Total: -61.31 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -4.71 Total: 17.42 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.56 -7.18 -40.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088407305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.803 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds