Wall clock time and date at job start Tue Mar 31 2020 18:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47243 * 2 1 4 4 N 1.46501 * 109.47147 * 180.02562 * 3 2 1 5 5 C 1.34808 * 126.59361 * 125.00261 * 4 3 2 6 6 C 1.36595 * 106.83754 * 180.02562 * 5 4 3 7 7 C 1.47531 * 125.76852 * 179.73649 * 6 5 4 8 8 O 1.21589 * 120.00124 * 0.02562 * 7 6 5 9 9 N 1.34773 * 119.99936 * 179.97438 * 7 6 5 10 10 C 1.46965 * 120.35388 * 359.97438 * 9 7 6 11 11 C 1.52338 * 109.08420 * 68.38047 * 10 9 7 12 12 C 1.53808 * 109.16351 * 72.70213 * 11 10 9 13 13 C 1.52441 * 109.42042 * 282.12706 * 12 11 10 14 14 C 1.53965 * 110.73224 * 113.72942 * 13 12 11 15 15 C 1.52884 * 109.71617 * 315.64459 * 14 13 12 16 16 H 1.08999 * 109.47684 * 47.09294 * 15 14 13 17 17 N 1.46504 * 109.47972 * 167.11215 * 15 14 13 18 18 C 1.36937 * 119.99646 * 205.00113 * 17 15 14 19 19 H 1.07994 * 120.00083 * 0.02562 * 18 17 15 20 20 C 1.38814 * 119.99410 * 180.02562 * 18 17 15 21 21 N 1.31624 * 119.99677 * 179.97438 * 20 18 17 22 22 Si 1.86793 * 120.00287 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47367 * 89.99787 * 22 20 18 24 24 H 1.48506 * 109.47122 * 209.99974 * 22 20 18 25 25 H 1.48497 * 109.47435 * 329.99508 * 22 20 18 26 26 C 1.45338 * 120.35848 * 179.72785 * 9 7 6 27 27 N 1.34401 * 108.46194 * 359.97438 * 6 5 4 28 28 N 1.28757 * 109.51883 * 0.02562 * 27 6 5 29 29 H 1.08998 * 109.47013 * 59.99774 * 1 2 3 30 30 H 1.08993 * 109.46910 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46849 * 299.99952 * 1 2 3 32 32 H 1.08998 * 109.46849 * 240.00048 * 2 1 3 33 33 H 1.08998 * 109.47013 * 120.00226 * 2 1 3 34 34 H 1.08998 * 109.47159 * 60.00237 * 3 2 1 35 35 H 1.08998 * 109.47301 * 300.00050 * 3 2 1 36 36 H 1.07995 * 126.58340 * 0.04031 * 5 4 3 37 37 H 1.08998 * 109.53230 * 188.25883 * 10 9 7 38 38 H 1.08992 * 109.53897 * 308.49984 * 10 9 7 39 39 H 1.09004 * 109.52107 * 192.60485 * 11 10 9 40 40 H 1.08995 * 109.52412 * 312.79979 * 11 10 9 41 41 H 1.09005 * 109.47774 * 42.11397 * 12 11 10 42 42 H 1.09004 * 109.47574 * 162.13224 * 12 11 10 43 43 H 1.09001 * 109.22576 * 234.04982 * 13 12 11 44 44 H 1.09001 * 109.22549 * 353.40677 * 13 12 11 45 45 H 1.08998 * 109.43527 * 75.72192 * 14 13 12 46 46 H 1.08999 * 109.43410 * 195.57360 * 14 13 12 47 47 H 0.97002 * 120.00110 * 25.00551 * 17 15 14 48 48 H 0.97001 * 120.00048 * 180.02562 * 21 20 18 49 49 H 1.09005 * 109.67085 * 343.07221 * 26 9 7 50 50 H 1.08991 * 109.68348 * 103.60590 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.3084 2.0634 -0.8874 6 6 5.5941 1.7980 -0.5102 7 6 6.8100 2.2724 -1.1979 8 8 6.7147 2.9644 -2.1932 9 7 8.0264 1.9397 -0.7225 10 6 8.1506 1.1051 0.4808 11 6 7.6613 -0.3023 0.1635 12 6 8.6964 -1.0073 -0.7293 13 6 8.5549 -0.5064 -2.1621 14 6 9.8055 0.2833 -2.5894 15 6 10.2225 1.2352 -1.4681 16 1 10.2253 0.6995 -0.5189 17 7 11.5657 1.7529 -1.7409 18 6 12.3551 2.1858 -0.7092 19 1 11.9878 2.1452 0.3056 20 6 13.6275 2.6767 -0.9678 21 7 14.3862 3.0933 0.0239 22 14 14.2625 2.7475 -2.7230 23 1 13.9049 4.0564 -3.3265 24 1 15.7392 2.5898 -2.7220 25 1 13.6485 1.6525 -3.5162 26 6 9.2293 2.3978 -1.3972 27 7 5.5642 1.0273 0.5905 28 7 4.3413 0.7964 0.9209 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9563 -0.8900 36 1 3.9955 2.6570 -1.7336 37 1 9.1946 1.0666 0.7914 38 1 7.5459 1.5290 1.2825 39 1 7.5379 -0.8626 1.0904 40 1 6.7067 -0.2468 -0.3596 41 1 9.7001 -0.7881 -0.3650 42 1 8.5268 -2.0838 -0.7020 43 1 8.4233 -1.3586 -2.8289 44 1 7.6806 0.1409 -2.2313 45 1 10.6196 -0.4111 -2.7970 46 1 9.5821 0.8579 -3.4883 47 1 11.8957 1.7890 -2.6524 48 1 15.2752 3.4368 -0.1568 49 1 8.9808 2.7295 -2.4054 50 1 9.6726 3.2218 -0.8382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088407305.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:38 Heat of formation + Delta-G solvation = 72.762632 kcal Electronic energy + Delta-G solvation = -30439.541379 eV Core-core repulsion = 26504.368715 eV Total energy + Delta-G solvation = -3935.172664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.31059 -41.28738 -38.92687 -37.03786 -36.48413 -35.08334 -34.11009 -33.49931 -32.19514 -31.68614 -28.95532 -28.09678 -27.26881 -25.74448 -24.28900 -23.88514 -23.17789 -22.77267 -22.28329 -21.01028 -20.03182 -19.53564 -18.57017 -17.81286 -17.23524 -16.99168 -16.86478 -16.50132 -16.03754 -15.82851 -15.56520 -15.37268 -15.13726 -14.93317 -14.77191 -14.42532 -14.34004 -14.08455 -13.84869 -13.57427 -13.33285 -13.16544 -13.09678 -12.95494 -12.76725 -12.69225 -12.42112 -12.28263 -12.10955 -11.94625 -11.82714 -11.78245 -11.69557 -11.56396 -11.46859 -11.24393 -11.13643 -11.05469 -10.81189 -10.27514 -9.61242 -9.22356 -8.00069 -5.33995 0.18659 0.66804 1.15196 1.39874 1.42438 1.49302 1.99945 2.23900 2.50251 3.15368 3.31318 3.35907 3.58373 3.69870 3.85589 3.85896 3.98727 4.02199 4.08826 4.18681 4.20543 4.24892 4.32757 4.35060 4.46665 4.51149 4.54720 4.63613 4.68281 4.76800 4.81609 4.84938 4.89796 4.99211 5.02089 5.13543 5.19103 5.24053 5.24811 5.30251 5.34823 5.38622 5.42903 5.49515 5.53995 5.69846 5.80648 6.23544 6.40075 6.89663 7.08720 7.14111 7.84044 8.03432 9.20906 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.002692 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.174992 B =10399.459879 C =10533.177622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.111 3.889 4 N -0.349 5.349 5 C 0.109 3.891 6 C -0.126 4.126 7 C 0.597 3.403 8 O -0.577 6.577 9 N -0.582 5.582 10 C 0.114 3.886 11 C -0.109 4.109 12 C -0.130 4.130 13 C -0.104 4.104 14 C -0.120 4.120 15 C 0.160 3.840 16 H 0.076 0.924 17 N -0.747 5.747 18 C -0.225 4.225 19 H 0.061 0.939 20 C -0.062 4.062 21 N -0.981 5.981 22 Si 0.951 3.049 23 H -0.283 1.283 24 H -0.297 1.297 25 H -0.251 1.251 26 C 0.104 3.896 27 N -0.204 5.204 28 N -0.089 5.089 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.112 0.888 35 H 0.137 0.863 36 H 0.232 0.768 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.049 0.951 45 H 0.065 0.935 46 H 0.058 0.942 47 H 0.365 0.635 48 H 0.257 0.743 49 H 0.074 0.926 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.682 -8.121 -2.530 32.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.007 4.007 4 N -0.134 5.134 5 C -0.049 4.049 6 C -0.265 4.265 7 C 0.385 3.615 8 O -0.457 6.457 9 N -0.312 5.312 10 C -0.008 4.008 11 C -0.148 4.148 12 C -0.167 4.167 13 C -0.142 4.142 14 C -0.158 4.158 15 C 0.051 3.949 16 H 0.093 0.907 17 N -0.389 5.389 18 C -0.356 4.356 19 H 0.079 0.921 20 C -0.254 4.254 21 N -0.632 5.632 22 Si 0.778 3.222 23 H -0.209 1.209 24 H -0.224 1.224 25 H -0.176 1.176 26 C -0.022 4.022 27 N -0.078 5.078 28 N -0.070 5.070 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.130 0.870 35 H 0.155 0.845 36 H 0.248 0.752 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.093 0.907 43 H 0.089 0.911 44 H 0.068 0.932 45 H 0.083 0.917 46 H 0.076 0.924 47 H 0.198 0.802 48 H 0.066 0.934 49 H 0.092 0.908 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -31.658 -8.601 -1.557 32.843 hybrid contribution 1.076 1.150 -1.509 2.181 sum -30.582 -7.450 -3.066 31.625 Atomic orbital electron populations 1.21678 0.92411 1.03034 1.03234 1.21769 0.98052 0.94331 1.03004 1.22618 0.70122 1.00535 1.07465 1.50806 1.09960 1.33774 1.18840 1.23745 0.89128 0.95997 0.96005 1.21268 0.94583 1.10217 1.00420 1.17059 0.82343 0.79219 0.82870 1.90749 1.86871 1.40768 1.27300 1.47628 1.04878 1.50361 1.28323 1.21796 1.01819 0.91270 0.85945 1.22012 0.98004 0.94147 1.00605 1.21905 0.99637 1.00294 0.94851 1.21569 0.96587 0.98987 0.97061 1.21978 0.98371 0.97966 0.97467 1.21012 0.82560 0.92056 0.99249 0.90682 1.42773 1.13678 1.77090 1.05374 1.18995 0.95345 1.32447 0.88818 0.92105 1.25447 0.97283 1.01597 1.01033 1.69877 1.10705 1.50329 1.32267 0.85472 0.77052 0.78602 0.81043 1.20900 1.22359 1.17559 1.22047 0.84451 0.98257 0.97409 1.74985 1.12790 1.09776 1.10234 1.81913 0.93667 1.18553 1.12843 0.91017 0.91916 0.91471 0.91843 0.91755 0.86969 0.84478 0.75170 0.90641 0.89982 0.89866 0.91251 0.91994 0.90717 0.91144 0.93192 0.91663 0.92354 0.80173 0.93448 0.90798 0.93891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.43 9.91 71.98 0.71 0.28 16 2 C -0.13 -0.89 6.14 30.59 0.19 -0.70 16 3 C 0.11 0.63 6.54 86.38 0.56 1.20 16 4 N -0.35 -5.23 3.69 -347.11 -1.28 -6.51 16 5 C 0.11 1.89 11.27 83.85 0.95 2.84 16 6 C -0.13 -3.21 5.93 40.82 0.24 -2.97 16 7 C 0.60 19.10 6.25 86.69 0.54 19.64 16 8 O -0.58 -21.09 16.30 -4.00 -0.07 -21.16 16 9 N -0.58 -19.16 1.69 -828.45 -1.40 -20.56 16 10 C 0.11 3.37 4.89 86.07 0.42 3.79 16 11 C -0.11 -2.77 4.40 30.65 0.13 -2.64 16 12 C -0.13 -3.33 5.49 30.68 0.17 -3.16 16 13 C -0.10 -2.82 5.40 30.74 0.17 -2.65 16 14 C -0.12 -3.83 5.21 30.88 0.16 -3.67 16 15 C 0.16 6.12 2.29 44.98 0.10 6.22 16 16 H 0.08 2.94 3.29 -2.39 -0.01 2.93 16 17 N -0.75 -34.95 4.93 -323.00 -1.59 -36.54 16 18 C -0.23 -12.72 10.36 84.03 0.87 -11.85 16 19 H 0.06 3.74 8.06 -2.91 -0.02 3.72 16 20 C -0.06 -3.67 5.50 84.86 0.47 -3.20 16 21 N -0.98 -63.10 13.97 21.65 0.30 -62.79 16 22 Si 0.95 46.10 27.74 68.60 1.90 48.00 16 23 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 24 H -0.30 -14.57 7.11 99.48 0.71 -13.87 16 25 H -0.25 -10.99 6.52 99.48 0.65 -10.34 16 26 C 0.10 3.99 5.58 86.62 0.48 4.47 16 27 N -0.20 -5.18 6.76 -49.99 -0.34 -5.51 16 28 N -0.09 -1.98 13.65 37.02 0.51 -1.47 16 29 H 0.07 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.07 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.14 -0.08 8.08 -2.39 -0.02 -0.10 16 36 H 0.23 2.44 8.06 -2.91 -0.02 2.41 16 37 H 0.08 2.45 6.07 -2.39 -0.01 2.44 16 38 H 0.08 2.39 6.67 -2.39 -0.02 2.37 16 39 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.07 1.83 4.70 -2.39 -0.01 1.82 16 41 H 0.06 1.83 5.47 -2.38 -0.01 1.81 16 42 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 43 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 44 H 0.05 1.45 5.38 -2.39 -0.01 1.44 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.85 7.85 -2.39 -0.02 1.84 16 47 H 0.37 16.59 5.66 -92.71 -0.52 16.06 16 48 H 0.26 15.79 8.31 -92.71 -0.77 15.02 16 49 H 0.07 2.92 6.77 -2.38 -0.02 2.91 16 50 H 0.04 1.89 8.08 -2.39 -0.02 1.87 16 Total: -1.00 -74.90 378.48 4.58 -70.33 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.38 Total: 28.63 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: 6.17 Total: 7.60 kcal Atomic # 7 Polarization: -129.59 SS G_CDS: -3.81 Total: -133.39 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: -0.07 Total: -21.16 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.90 Total: 48.00 kcal Total: -74.90 4.58 -70.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088407305.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.088 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds