Wall clock time and date at job start Tue Mar 31 2020 18:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 N 1.46496 * 109.47487 * 179.97438 * 3 2 1 5 5 C 1.34812 * 126.59533 * 124.71374 * 4 3 2 6 6 C 1.36597 * 106.84327 * 179.90790 * 5 4 3 7 7 C 1.47519 * 125.77021 * 180.13164 * 6 5 4 8 8 O 1.21589 * 120.00570 * 0.24657 * 7 6 5 9 9 N 1.34784 * 119.99864 * 180.24454 * 7 6 5 10 10 C 1.46961 * 120.36356 * 359.72576 * 9 7 6 11 11 C 1.51803 * 109.40061 * 291.90328 * 10 9 7 12 12 C 1.53811 * 109.05243 * 287.19154 * 11 10 9 13 13 C 1.52443 * 109.40069 * 77.79115 * 12 11 10 14 14 C 1.53959 * 110.72703 * 246.26789 * 13 12 11 15 15 C 1.52877 * 109.72986 * 44.37108 * 14 13 12 16 16 H 1.09002 * 109.48476 * 312.92041 * 15 14 13 17 17 N 1.46501 * 109.48172 * 192.87021 * 15 14 13 18 18 C 1.36936 * 119.99608 * 155.08599 * 17 15 14 19 19 H 1.07999 * 120.00346 * 359.97438 * 18 17 15 20 20 C 1.38822 * 119.99827 * 179.97438 * 18 17 15 21 21 N 1.31621 * 119.99656 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99863 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47386 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46783 * 120.00267 * 22 20 18 25 25 H 1.48500 * 109.47242 * 239.99895 * 22 20 18 26 26 C 1.45331 * 120.36775 * 180.02562 * 9 7 6 27 27 N 1.34402 * 108.45521 * 0.36672 * 6 5 4 28 28 N 1.28760 * 109.52212 * 359.77011 * 27 6 5 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.08010 * 126.57729 * 0.03796 * 5 4 3 37 37 H 1.08998 * 109.53260 * 51.52259 * 10 9 7 38 38 H 1.09002 * 109.53321 * 171.75109 * 10 9 7 39 39 H 1.08995 * 109.61419 * 167.29951 * 11 10 9 40 40 H 1.08997 * 109.58875 * 47.06816 * 11 10 9 41 41 H 1.08996 * 109.48305 * 317.80711 * 12 11 10 42 42 H 1.09003 * 109.48927 * 197.77400 * 12 11 10 43 43 H 1.08996 * 109.22326 * 125.95225 * 13 12 11 44 44 H 1.09000 * 109.19411 * 6.56758 * 13 12 11 45 45 H 1.08995 * 109.42667 * 284.28651 * 14 13 12 46 46 H 1.08997 * 109.42504 * 164.44797 * 14 13 12 47 47 H 0.96995 * 120.00430 * 335.08534 * 17 15 14 48 48 H 0.96993 * 119.99349 * 180.02562 * 21 20 18 49 49 H 1.09004 * 109.67515 * 256.39270 * 26 9 7 50 50 H 1.09000 * 109.67671 * 16.88668 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.3090 2.0588 -0.8888 6 6 5.5945 1.7977 -0.5076 7 6 6.8108 2.2761 -1.1916 8 8 6.7164 2.9710 -2.1849 9 7 8.0269 1.9429 -0.7155 10 6 8.1504 1.1084 0.4879 11 6 7.6634 1.8893 1.6952 12 6 8.7007 2.9693 2.0464 13 6 8.5605 4.1395 1.0794 14 6 9.8109 4.2640 0.1899 15 6 10.2254 2.8816 -0.3144 16 1 10.2272 2.1768 0.5171 17 7 11.5681 2.9558 -0.8955 18 6 12.3551 1.8363 -0.9460 19 1 11.9861 0.8988 -0.5570 20 6 13.6273 1.9065 -1.4971 21 7 14.0771 3.0492 -1.9708 22 14 14.7011 0.3795 -1.5653 23 1 13.9686 -0.7678 -0.9716 24 1 15.0371 0.0734 -2.9791 25 1 15.9511 0.6188 -0.8001 26 6 9.2305 2.4102 -1.3827 27 7 5.5636 1.0270 0.5931 28 7 4.3405 0.7965 0.9228 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9564 -0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.9967 2.6479 -1.7386 37 1 7.5425 0.2111 0.3731 38 1 9.1938 0.8272 0.6309 39 1 7.5396 1.2142 2.5419 40 1 6.7091 2.3623 1.4638 41 1 9.7035 2.5499 1.9666 42 1 8.5323 3.3176 3.0654 43 1 8.4309 5.0607 1.6473 44 1 7.6858 3.9804 0.4488 45 1 10.6259 4.6982 0.7688 46 1 9.5881 4.9083 -0.6606 47 1 11.8997 3.7979 -1.2446 48 1 14.9659 3.0980 -2.3562 49 1 9.6699 1.5963 -1.9595 50 1 8.9839 3.2389 -2.0464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088407306.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:43 Heat of formation + Delta-G solvation = 89.821439 kcal Electronic energy + Delta-G solvation = -30355.046642 eV Core-core repulsion = 26420.613704 eV Total energy + Delta-G solvation = -3934.432939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.40737 -39.94501 -37.48132 -36.39464 -34.79720 -33.70557 -32.94606 -32.18314 -30.89278 -29.83097 -27.70763 -26.95178 -25.99337 -24.24802 -23.30572 -22.87621 -22.06003 -21.82664 -21.23317 -19.66976 -18.64267 -17.56454 -17.15163 -16.40553 -16.35353 -16.12815 -15.54978 -15.32574 -14.92010 -14.57710 -14.18530 -14.15111 -13.87168 -13.65341 -13.58865 -13.22456 -13.10497 -12.78414 -12.64282 -12.39952 -12.29233 -12.25312 -12.02428 -11.55081 -11.38677 -11.37610 -11.22049 -10.96244 -10.85520 -10.79855 -10.50898 -10.36827 -10.27898 -10.12403 -10.07347 -9.81449 -9.67823 -9.54866 -9.32388 -8.90477 -8.10108 -6.94683 -5.75701 -3.04831 1.00487 1.72520 1.82183 3.29251 3.44040 3.45341 3.50661 3.52586 3.90262 4.11971 4.20158 4.46266 4.57911 4.60960 4.68142 4.80887 4.84289 5.01292 5.08340 5.17365 5.25475 5.28333 5.40997 5.44084 5.51316 5.57157 5.60192 5.64098 5.67541 5.78343 5.87308 5.99437 6.05957 6.10206 6.16768 6.23439 6.31609 6.35818 6.43029 6.48167 6.58036 6.70227 6.76468 6.88723 6.90792 7.17120 7.71114 7.71995 7.86543 8.40938 8.44000 9.53950 10.11029 10.45850 11.46703 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.020864 B = 0.002677 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.725680 B =10457.461416 C =10720.323746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.122 3.878 4 N -0.365 5.365 5 C 0.088 3.912 6 C -0.096 4.096 7 C 0.594 3.406 8 O -0.548 6.548 9 N -0.579 5.579 10 C 0.111 3.889 11 C -0.121 4.121 12 C -0.131 4.131 13 C -0.112 4.112 14 C -0.123 4.123 15 C 0.157 3.843 16 H 0.068 0.932 17 N -0.719 5.719 18 C -0.240 4.240 19 H 0.071 0.929 20 C -0.012 4.012 21 N -0.930 5.930 22 Si 0.905 3.095 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.089 3.911 27 N -0.190 5.190 28 N -0.075 5.075 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.202 0.798 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.053 0.947 43 H 0.049 0.951 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.070 0.930 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.693 -2.637 6.380 28.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C 0.001 3.999 4 N -0.150 5.150 5 C -0.068 4.068 6 C -0.234 4.234 7 C 0.380 3.620 8 O -0.426 6.426 9 N -0.309 5.309 10 C -0.012 4.012 11 C -0.160 4.160 12 C -0.169 4.169 13 C -0.150 4.150 14 C -0.161 4.161 15 C 0.047 3.953 16 H 0.085 0.915 17 N -0.360 5.360 18 C -0.371 4.371 19 H 0.089 0.911 20 C -0.208 4.208 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.036 4.036 27 N -0.064 5.064 28 N -0.055 5.055 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.115 0.885 36 H 0.218 0.782 37 H 0.096 0.904 38 H 0.108 0.892 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.082 0.918 46 H 0.075 0.925 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.088 0.912 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -27.599 -3.311 7.114 28.693 hybrid contribution 0.513 0.104 -1.150 1.263 sum -27.087 -3.207 5.965 27.920 Atomic orbital electron populations 1.21706 0.93922 1.02851 1.02307 1.21828 0.96876 0.94653 1.04256 1.22113 0.72833 0.99972 1.05001 1.50509 1.08627 1.35706 1.20130 1.23354 0.90260 0.97309 0.95921 1.21574 0.94678 1.08299 0.98863 1.16765 0.81882 0.80222 0.83156 1.90782 1.86376 1.39475 1.26001 1.47720 1.05438 1.49839 1.27944 1.21636 1.02511 0.93388 0.83681 1.22015 0.98436 0.97956 0.97553 1.21931 1.00436 0.96323 0.98194 1.21632 0.98563 0.97474 0.97360 1.22006 0.96961 0.98126 0.98989 1.20922 0.85430 0.95107 0.93851 0.91461 1.42426 1.10654 1.10807 1.72083 1.19267 0.95314 0.89437 1.33067 0.91089 1.24755 0.97739 0.96911 1.01430 1.69676 1.18442 1.23846 1.45845 0.86145 0.80604 0.82375 0.77226 1.20512 1.21907 1.21905 1.22665 0.83277 1.00261 0.97385 1.75024 1.11828 1.09730 1.09834 1.81975 0.93751 1.17334 1.12425 0.92100 0.91659 0.92250 0.90004 0.91045 0.87860 0.88473 0.78171 0.90439 0.89244 0.91194 0.91268 0.90391 0.92859 0.93264 0.92513 0.91760 0.92486 0.78129 0.93544 0.91209 0.90096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.44 9.91 37.16 0.37 -0.07 16 2 C -0.14 -0.64 6.14 -26.73 -0.16 -0.81 16 3 C 0.12 0.57 6.54 -4.04 -0.03 0.54 16 4 N -0.36 -3.27 3.69 -61.06 -0.23 -3.50 16 5 C 0.09 0.90 11.27 -16.84 -0.19 0.71 16 6 C -0.10 -1.30 5.92 -83.55 -0.49 -1.80 16 7 C 0.59 9.83 6.25 -12.47 -0.08 9.76 16 8 O -0.55 -10.42 16.30 5.29 0.09 -10.33 16 9 N -0.58 -9.62 1.70 -175.94 -0.30 -9.92 16 10 C 0.11 1.63 4.85 -4.40 -0.02 1.61 16 11 C -0.12 -1.63 4.39 -26.92 -0.12 -1.74 16 12 C -0.13 -1.85 5.49 -26.59 -0.15 -2.00 16 13 C -0.11 -1.71 5.40 -26.52 -0.14 -1.85 16 14 C -0.12 -2.17 5.22 -26.29 -0.14 -2.30 16 15 C 0.16 3.11 2.29 -67.78 -0.16 2.96 16 16 H 0.07 1.32 3.29 -51.93 -0.17 1.15 16 17 N -0.72 -17.81 5.13 -53.28 -0.27 -18.08 16 18 C -0.24 -6.52 9.88 -15.06 -0.15 -6.67 16 19 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 21 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 C 0.09 1.72 5.60 -4.46 -0.02 1.69 16 27 N -0.19 -2.54 6.77 32.85 0.22 -2.32 16 28 N -0.07 -0.90 13.65 60.35 0.82 -0.07 16 29 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 30 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.23 8.08 -51.93 -0.42 -0.19 16 35 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.20 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.08 1.11 6.64 -51.93 -0.34 0.76 16 38 H 0.09 1.38 6.06 -51.93 -0.31 1.06 16 39 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.07 0.99 4.71 -51.93 -0.24 0.74 16 41 H 0.08 1.21 5.47 -51.93 -0.28 0.92 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.91 5.37 -51.93 -0.28 0.63 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.06 1.03 7.87 -51.93 -0.41 0.62 16 47 H 0.38 10.25 7.80 -40.82 -0.32 9.93 16 48 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 49 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 50 H 0.08 1.67 6.79 -51.93 -0.35 1.31 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -32.80 381.62 -7.54 -40.34 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -7.75 Total: 8.51 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: -1.58 Total: -0.41 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: 0.97 Total: -61.17 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.09 Total: -10.33 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.80 -7.54 -40.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088407306.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.162 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds