Wall clock time and date at job start Tue Mar 31 2020 18:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47435 * 2 1 4 4 H 1.09006 * 109.46955 * 55.00348 * 3 2 1 5 5 C 1.52990 * 109.47373 * 295.00130 * 3 2 1 6 6 C 1.53007 * 109.47142 * 174.99748 * 3 2 1 7 7 C 1.50695 * 109.47019 * 185.00040 * 6 3 2 8 8 O 1.21283 * 120.00238 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99686 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64857 * 0.03317 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64625 * 179.97438 * 9 7 6 30 30 H 1.09004 * 109.47738 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46677 * 300.00052 * 1 2 3 32 32 H 1.09000 * 109.47085 * 59.99820 * 1 2 3 33 33 H 1.09006 * 109.47078 * 239.99678 * 2 1 3 34 34 H 1.09004 * 109.46615 * 120.00749 * 2 1 3 35 35 H 1.09002 * 109.47375 * 60.00115 * 5 3 2 36 36 H 1.08999 * 109.47644 * 179.97438 * 5 3 2 37 37 H 1.09006 * 109.47258 * 300.00032 * 5 3 2 38 38 H 1.08999 * 109.46681 * 65.00162 * 6 3 2 39 39 H 1.08999 * 109.47209 * 305.00635 * 6 3 2 40 40 H 1.08993 * 110.37184 * 36.99021 * 10 9 7 41 41 H 1.09004 * 110.36546 * 274.66585 * 10 9 7 42 42 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 43 43 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 44 44 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 45 45 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 46 46 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 47 47 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 48 48 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.87987 * 61.68287 * 29 9 7 50 50 H 1.09002 * 109.88123 * 300.51640 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3072 6 6 3.5649 1.4442 0.1258 7 6 4.0571 2.8631 0.2493 8 8 3.2662 3.7825 0.2383 9 7 5.3762 3.1104 0.3730 10 6 6.4423 2.0925 0.4013 11 6 7.7165 2.8397 -0.0656 12 6 7.5173 4.2332 0.5872 13 1 7.8499 4.2239 1.6252 14 7 8.2241 5.2672 -0.1724 15 6 8.4046 5.2820 -1.5134 16 6 9.1030 6.4085 -1.7875 17 6 9.5557 6.8809 -3.1451 18 7 8.5750 7.8255 -3.6856 19 6 8.7755 8.3912 -4.9164 20 1 9.6565 8.1408 -5.4888 21 6 7.8466 9.2866 -5.4283 22 7 6.7732 9.5922 -4.7305 23 14 8.1197 10.0579 -7.1076 24 1 7.5008 9.2025 -8.1518 25 1 7.4983 11.4063 -7.1399 26 1 9.5771 10.1781 -7.3659 27 7 9.3134 7.0195 -0.6162 28 7 8.7800 6.3181 0.3210 29 6 5.9904 4.4401 0.5009 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5140 0.8900 35 1 0.5490 2.1253 -1.3968 36 1 1.9983 3.1543 -1.3071 37 1 2.0699 1.5874 -2.1491 38 1 4.0030 0.9834 -0.7596 39 1 3.8571 0.8798 1.0113 40 1 6.2076 1.2782 -0.2840 41 1 6.5757 1.7110 1.4136 42 1 7.7473 2.9182 -1.1523 43 1 8.6153 2.3548 0.3153 44 1 8.0611 4.5432 -2.2223 45 1 10.5235 7.3742 -3.0541 46 1 9.6452 6.0263 -3.8159 47 1 7.7840 8.0506 -3.1713 48 1 6.1243 10.2182 -5.0880 49 1 5.6309 4.9289 1.4063 50 1 5.7472 5.0463 -0.3718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098664470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:13 Heat of formation + Delta-G solvation = 71.008706 kcal Electronic energy + Delta-G solvation = -28708.355571 eV Core-core repulsion = 24773.106851 eV Total energy + Delta-G solvation = -3935.248720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.07428 -40.59061 -38.43442 -36.53375 -35.06549 -34.04268 -31.97523 -31.36355 -30.82238 -29.96575 -29.36447 -27.78881 -25.87814 -24.99617 -23.69119 -23.19917 -22.73250 -20.89366 -20.68928 -20.41677 -19.53478 -17.87990 -17.44124 -17.01831 -16.36398 -16.21519 -15.74572 -15.22762 -15.12179 -14.76404 -14.53217 -14.39051 -14.02208 -13.87115 -13.63742 -13.29099 -13.19276 -13.06476 -12.88435 -12.66351 -12.54136 -12.29592 -12.26825 -12.07232 -11.96531 -11.71488 -11.53466 -11.26147 -11.17391 -10.96747 -10.90194 -10.88335 -10.78993 -10.46742 -10.09898 -10.05178 -9.87942 -9.71215 -9.12211 -8.88937 -8.84554 -6.89906 -5.71343 -3.01468 1.72864 2.10175 2.30209 2.66397 2.88902 3.47295 3.52178 3.54650 3.65725 3.77139 4.20246 4.27001 4.35140 4.38288 4.48565 4.57734 4.64801 4.73941 4.75205 4.85944 4.90648 5.06448 5.08799 5.16700 5.18250 5.27642 5.29631 5.33501 5.35274 5.41958 5.43750 5.49692 5.63238 5.63864 5.68399 5.72942 5.74929 5.84118 5.89019 6.07496 6.18731 6.25200 6.38692 6.64259 6.72395 6.78072 7.02480 7.72904 7.81670 8.45514 8.80478 9.57195 10.12801 10.48542 11.51298 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.002477 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.477301 B =11300.431106 C =13299.227487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.078 4.078 4 H 0.078 0.922 5 C -0.157 4.157 6 C -0.131 4.131 7 C 0.529 3.471 8 O -0.524 6.524 9 N -0.622 5.622 10 C 0.102 3.898 11 C -0.143 4.143 12 C 0.138 3.862 13 H 0.130 0.870 14 N -0.294 5.294 15 C -0.042 4.042 16 C -0.002 4.002 17 C 0.232 3.768 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.073 0.927 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.909 3.091 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.281 1.281 27 N -0.250 5.250 28 N -0.093 5.093 29 C 0.098 3.902 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.048 0.952 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.102 0.898 44 H 0.186 0.814 45 H 0.039 0.961 46 H 0.037 0.963 47 H 0.385 0.615 48 H 0.255 0.745 49 H 0.086 0.914 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.518 -27.004 13.904 30.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.097 0.903 5 C -0.214 4.214 6 C -0.171 4.171 7 C 0.318 3.682 8 O -0.399 6.399 9 N -0.359 5.359 10 C -0.021 4.021 11 C -0.182 4.182 12 C 0.034 3.966 13 H 0.148 0.852 14 N -0.088 5.088 15 C -0.192 4.192 16 C -0.139 4.139 17 C 0.103 3.897 18 N -0.371 5.371 19 C -0.372 4.372 20 H 0.091 0.909 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.740 3.260 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.071 5.071 29 C -0.026 4.026 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.067 0.933 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.114 0.886 43 H 0.121 0.879 44 H 0.203 0.797 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.219 0.781 48 H 0.065 0.935 49 H 0.104 0.896 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.668 -25.665 15.031 30.278 hybrid contribution -0.413 -0.146 -1.618 1.677 sum -6.081 -25.811 13.412 29.717 Atomic orbital electron populations 1.21811 0.95620 1.01487 1.02241 1.21583 0.96332 0.95893 1.01855 1.20954 0.92364 0.96191 1.00136 0.90341 1.22013 1.01459 1.02217 0.95695 1.21765 0.98020 0.93110 1.04167 1.20510 0.79839 0.92068 0.75734 1.90739 1.53419 1.46801 1.48980 1.48462 1.05943 1.07279 1.74190 1.22357 0.85632 0.91863 1.02237 1.23292 0.99040 0.92954 1.02941 1.22492 0.91338 0.85343 0.97409 0.85235 1.47109 1.37718 1.17772 1.06250 1.23262 1.06761 1.03766 0.85432 1.22481 1.01634 0.93105 0.96721 1.18955 0.93605 0.93191 0.83918 1.42306 1.24201 1.50795 1.19761 1.19217 1.04999 1.19460 0.93489 0.90879 1.24772 0.97146 1.00228 0.98793 1.69683 1.12015 1.38280 1.37944 0.86158 0.77406 0.78563 0.83850 1.21744 1.21783 1.20660 1.75113 1.17091 1.22072 0.97511 1.78291 1.11415 0.94599 1.22812 1.22217 0.90011 0.85954 1.04394 0.92854 0.92706 0.92266 0.91895 0.92077 0.92517 0.90691 0.93267 0.88752 0.88869 0.89266 0.90228 0.88636 0.87913 0.79664 0.94278 0.94514 0.78093 0.93476 0.89588 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.12 -0.67 5.40 -26.74 -0.14 -0.81 16 3 C -0.08 -0.58 2.04 -90.62 -0.18 -0.77 16 4 H 0.08 0.71 7.96 -51.93 -0.41 0.30 16 5 C -0.16 -1.45 8.69 37.15 0.32 -1.12 16 6 C -0.13 -0.83 4.18 -27.88 -0.12 -0.95 16 7 C 0.53 5.36 7.57 -10.99 -0.08 5.27 16 8 O -0.52 -7.67 14.29 5.55 0.08 -7.59 16 9 N -0.62 -5.23 3.33 -170.52 -0.57 -5.79 16 10 C 0.10 0.43 6.69 -2.53 -0.02 0.42 16 11 C -0.14 -0.75 6.48 -24.58 -0.16 -0.91 16 12 C 0.14 1.20 3.98 -66.10 -0.26 0.93 16 13 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 14 N -0.29 -4.01 3.28 -52.99 -0.17 -4.18 16 15 C -0.04 -0.63 10.59 -17.04 -0.18 -0.81 16 16 C 0.00 -0.04 6.62 -82.77 -0.55 -0.58 16 17 C 0.23 4.91 6.82 -5.19 -0.04 4.88 16 18 N -0.73 -19.26 5.59 -61.08 -0.34 -19.60 16 19 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 20 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -29.23 13.06 55.49 0.72 -28.51 16 23 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 N -0.25 -5.11 12.41 33.29 0.41 -4.70 16 28 N -0.09 -1.63 13.16 60.35 0.79 -0.83 16 29 C 0.10 1.02 6.62 -3.06 -0.02 1.00 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.37 6.57 -51.93 -0.34 0.03 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.49 6.57 -51.93 -0.34 0.15 16 36 H 0.07 0.92 5.95 -51.93 -0.31 0.61 16 37 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.46 7.85 -51.93 -0.41 0.05 16 39 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.09 0.23 7.48 -51.93 -0.39 -0.16 16 41 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.10 0.56 6.39 -51.93 -0.33 0.23 16 43 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.19 2.17 7.01 -52.49 -0.37 1.80 16 45 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.39 11.11 7.66 -40.82 -0.31 10.79 16 48 H 0.26 7.73 8.31 -40.82 -0.34 7.40 16 49 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.08 1.14 8.03 -51.93 -0.42 0.73 16 LS Contribution 402.13 15.07 6.06 6.06 Total: -1.00 -37.12 402.13 -7.60 -44.72 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -8.25 Total: 4.14 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -1.32 Total: -1.51 kcal Atomic # 7 Polarization: -64.46 SS G_CDS: 0.85 Total: -63.61 kcal Atomic # 8 Polarization: -7.67 SS G_CDS: 0.08 Total: -7.59 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -37.12 -7.60 -44.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098664470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.728 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds