Wall clock time and date at job start Tue Mar 31 2020 18:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47435 * 2 1 4 4 H 1.09006 * 109.46955 * 55.00348 * 3 2 1 5 5 C 1.52990 * 109.47373 * 295.00130 * 3 2 1 6 6 C 1.53007 * 109.47142 * 174.99748 * 3 2 1 7 7 C 1.50695 * 109.47019 * 185.00040 * 6 3 2 8 8 O 1.21283 * 120.00238 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99686 * 179.97438 * 7 6 3 10 10 C 1.47423 * 125.64857 * 0.03317 * 9 7 6 11 11 C 1.54914 * 104.83153 * 155.83117 * 10 9 7 12 12 C 1.55161 * 101.58246 * 37.00787 * 11 10 9 13 13 H 1.08995 * 110.72070 * 83.03606 * 12 11 10 14 14 N 1.46492 * 110.72048 * 206.13686 * 12 11 10 15 15 C 1.35317 * 125.86956 * 33.55812 * 14 12 11 16 16 C 1.35349 * 106.17446 * 179.97438 * 15 14 12 17 17 C 1.50703 * 126.75129 * 179.97438 * 16 15 14 18 18 N 1.46499 * 109.47470 * 95.04643 * 17 16 15 19 19 C 1.36932 * 120.00287 * 179.97438 * 18 17 16 20 20 H 1.08004 * 119.99540 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00200 * 180.02562 * 19 18 17 22 22 N 1.31620 * 119.99983 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47294 * 89.99997 * 23 21 19 25 25 H 1.48503 * 109.46988 * 210.00048 * 23 21 19 26 26 H 1.48506 * 109.47040 * 330.00013 * 23 21 19 27 27 N 1.33777 * 106.49799 * 0.02562 * 16 15 14 28 28 N 1.28634 * 108.88349 * 359.97438 * 27 16 15 29 29 C 1.47027 * 125.64625 * 179.97438 * 9 7 6 30 30 H 1.09004 * 109.47738 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46677 * 300.00052 * 1 2 3 32 32 H 1.09000 * 109.47085 * 59.99820 * 1 2 3 33 33 H 1.09006 * 109.47078 * 239.99678 * 2 1 3 34 34 H 1.09004 * 109.46615 * 120.00749 * 2 1 3 35 35 H 1.09002 * 109.47375 * 60.00115 * 5 3 2 36 36 H 1.08999 * 109.47644 * 179.97438 * 5 3 2 37 37 H 1.09006 * 109.47258 * 300.00032 * 5 3 2 38 38 H 1.08999 * 109.46681 * 65.00162 * 6 3 2 39 39 H 1.08999 * 109.47209 * 305.00635 * 6 3 2 40 40 H 1.08993 * 110.37184 * 36.99021 * 10 9 7 41 41 H 1.09004 * 110.36546 * 274.66585 * 10 9 7 42 42 H 1.08999 * 111.00284 * 278.93101 * 11 10 9 43 43 H 1.08999 * 111.00108 * 155.07873 * 11 10 9 44 44 H 1.07994 * 126.91360 * 359.93700 * 15 14 12 45 45 H 1.09001 * 109.47240 * 215.04786 * 17 16 15 46 46 H 1.09006 * 109.46803 * 335.04653 * 17 16 15 47 47 H 0.97002 * 119.99348 * 0.02562 * 18 17 16 48 48 H 0.96997 * 120.00045 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.87987 * 61.68287 * 29 9 7 50 50 H 1.09002 * 109.88123 * 300.51640 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6353 2.1265 -1.3072 6 6 3.5649 1.4442 0.1258 7 6 4.0571 2.8631 0.2493 8 8 3.2662 3.7825 0.2383 9 7 5.3762 3.1104 0.3730 10 6 6.4423 2.0925 0.4013 11 6 7.7165 2.8397 -0.0656 12 6 7.5173 4.2332 0.5872 13 1 7.8499 4.2239 1.6252 14 7 8.2241 5.2672 -0.1724 15 6 8.4046 5.2820 -1.5134 16 6 9.1030 6.4085 -1.7875 17 6 9.5557 6.8809 -3.1451 18 7 8.5750 7.8255 -3.6856 19 6 8.7755 8.3912 -4.9164 20 1 9.6565 8.1408 -5.4888 21 6 7.8466 9.2866 -5.4283 22 7 6.7732 9.5922 -4.7305 23 14 8.1197 10.0579 -7.1076 24 1 7.5008 9.2025 -8.1518 25 1 7.4983 11.4063 -7.1399 26 1 9.5771 10.1781 -7.3659 27 7 9.3134 7.0195 -0.6162 28 7 8.7800 6.3181 0.3210 29 6 5.9904 4.4401 0.5009 30 1 -0.3635 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5140 0.8900 35 1 0.5490 2.1253 -1.3968 36 1 1.9983 3.1543 -1.3071 37 1 2.0699 1.5874 -2.1491 38 1 4.0030 0.9834 -0.7596 39 1 3.8571 0.8798 1.0113 40 1 6.2076 1.2782 -0.2840 41 1 6.5757 1.7110 1.4136 42 1 7.7473 2.9182 -1.1523 43 1 8.6153 2.3548 0.3153 44 1 8.0611 4.5432 -2.2223 45 1 10.5235 7.3742 -3.0541 46 1 9.6452 6.0263 -3.8159 47 1 7.7840 8.0506 -3.1713 48 1 6.1243 10.2182 -5.0880 49 1 5.6309 4.9289 1.4063 50 1 5.7472 5.0463 -0.3718 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098664470.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:12 Heat of formation + Delta-G solvation = 44.591452 kcal Electronic energy + Delta-G solvation = -28709.501109 eV Core-core repulsion = 24773.106851 eV Total energy + Delta-G solvation = -3936.394258 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.34263 -41.31439 -39.16377 -37.17636 -36.83043 -35.26116 -33.73135 -32.15271 -31.70134 -31.38775 -30.10652 -28.49580 -27.66722 -25.73360 -24.84458 -24.35269 -23.85367 -22.23355 -21.64505 -21.04358 -20.16433 -19.41483 -18.60261 -18.04216 -17.45245 -16.90118 -16.76983 -16.57810 -16.04537 -15.80011 -15.69237 -15.49205 -15.12471 -14.95690 -14.71535 -14.35531 -14.27213 -13.96400 -13.79853 -13.65278 -13.46106 -13.17869 -13.03656 -12.91323 -12.80851 -12.78252 -12.72863 -12.59084 -12.20427 -12.10442 -12.04759 -11.89552 -11.82232 -11.74494 -11.54799 -11.39489 -11.12647 -10.97426 -10.78936 -10.26292 -9.82162 -9.04346 -7.94854 -5.25901 0.51376 1.17533 1.42035 1.49362 1.51095 1.57634 1.59967 1.94419 2.58185 3.03737 3.12543 3.35068 3.42088 3.62810 3.68931 3.81775 3.85629 3.91514 3.97990 4.09847 4.19467 4.21728 4.24741 4.36156 4.44640 4.48939 4.56334 4.59195 4.65077 4.67248 4.74025 4.81886 4.83836 4.85087 4.89807 4.97621 5.08664 5.09914 5.15480 5.17579 5.18225 5.25724 5.30856 5.49352 5.51513 5.58092 5.63155 6.24209 6.38141 7.10015 7.30663 7.46495 8.02205 8.27728 9.29219 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.010618 B = 0.002477 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.477301 B =11300.431106 C =13299.227487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 C -0.077 4.077 4 H 0.055 0.945 5 C -0.155 4.155 6 C -0.121 4.121 7 C 0.519 3.481 8 O -0.584 6.584 9 N -0.619 5.619 10 C 0.101 3.899 11 C -0.134 4.134 12 C 0.131 3.869 13 H 0.153 0.847 14 N -0.277 5.277 15 C -0.017 4.017 16 C -0.035 4.035 17 C 0.235 3.765 18 N -0.741 5.741 19 C -0.242 4.242 20 H 0.088 0.912 21 C -0.082 4.082 22 N -0.976 5.976 23 Si 0.981 3.019 24 H -0.282 1.282 25 H -0.300 1.300 26 H -0.265 1.265 27 N -0.296 5.296 28 N -0.108 5.108 29 C 0.100 3.900 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.037 0.963 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.127 0.873 40 H 0.119 0.881 41 H 0.111 0.889 42 H 0.092 0.908 43 H 0.134 0.866 44 H 0.221 0.779 45 H 0.031 0.969 46 H 0.065 0.935 47 H 0.369 0.631 48 H 0.250 0.750 49 H 0.073 0.927 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -31.336 13.832 34.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.149 4.149 3 C -0.096 4.096 4 H 0.074 0.926 5 C -0.213 4.213 6 C -0.160 4.160 7 C 0.310 3.690 8 O -0.464 6.464 9 N -0.354 5.354 10 C -0.020 4.020 11 C -0.172 4.172 12 C 0.030 3.970 13 H 0.171 0.829 14 N -0.071 5.071 15 C -0.168 4.168 16 C -0.174 4.174 17 C 0.107 3.893 18 N -0.383 5.383 19 C -0.373 4.373 20 H 0.105 0.895 21 C -0.273 4.273 22 N -0.626 5.626 23 Si 0.809 3.191 24 H -0.209 1.209 25 H -0.227 1.227 26 H -0.189 1.189 27 N -0.163 5.163 28 N -0.087 5.087 29 C -0.025 4.025 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.079 0.921 38 H 0.138 0.862 39 H 0.145 0.855 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.111 0.889 43 H 0.152 0.848 44 H 0.238 0.762 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.199 0.801 48 H 0.058 0.942 49 H 0.092 0.908 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.256 -30.069 14.990 33.867 hybrid contribution -0.854 1.117 -1.499 2.056 sum -5.110 -28.952 13.491 32.347 Atomic orbital electron populations 1.21845 0.96264 1.01961 1.01482 1.21539 0.95762 0.94301 1.03276 1.20924 0.93591 0.97118 0.97969 0.92642 1.21976 1.01343 1.00443 0.97496 1.21820 0.96752 0.90606 1.06816 1.21361 0.79856 0.93171 0.74602 1.90724 1.55149 1.48815 1.51701 1.48569 1.06438 1.07336 1.73086 1.22756 0.83239 0.91094 1.04942 1.23411 1.01016 0.90169 1.02625 1.23006 0.89394 0.85912 0.98700 0.82945 1.47460 1.36069 1.17309 1.06260 1.23611 1.04144 1.02724 0.86333 1.22302 1.04303 0.95033 0.95713 1.19002 0.91865 0.92786 0.85640 1.42542 1.24653 1.51838 1.19297 1.19721 1.04883 1.18607 0.94115 0.89466 1.25703 0.97179 1.01497 1.02950 1.69875 1.13270 1.39478 1.40026 0.85027 0.77978 0.76918 0.79141 1.20927 1.22685 1.18923 1.75037 1.19000 1.23790 0.98456 1.78171 1.12251 0.95710 1.22537 1.21999 0.91560 0.87037 1.01895 0.91699 0.93400 0.93222 0.90698 0.90252 0.92740 0.94359 0.92109 0.86221 0.85466 0.86313 0.87146 0.88912 0.84763 0.76232 0.95066 0.91723 0.80067 0.94156 0.90842 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 9.67 71.98 0.70 -0.95 16 2 C -0.11 -0.95 5.40 30.59 0.17 -0.78 16 3 C -0.08 -1.07 2.04 -10.80 -0.02 -1.09 16 4 H 0.06 1.02 7.96 -2.38 -0.02 1.01 16 5 C -0.16 -2.92 8.69 71.98 0.63 -2.30 16 6 C -0.12 -1.17 4.18 29.85 0.12 -1.04 16 7 C 0.52 10.08 7.57 87.66 0.66 10.74 16 8 O -0.58 -18.19 14.29 -3.04 -0.04 -18.23 16 9 N -0.62 -9.20 3.33 -811.78 -2.70 -11.90 16 10 C 0.10 0.35 6.69 86.86 0.58 0.93 16 11 C -0.13 -0.79 6.48 31.99 0.21 -0.58 16 12 C 0.13 1.99 3.98 46.18 0.18 2.17 16 13 H 0.15 1.68 8.14 -2.39 -0.02 1.66 16 14 N -0.28 -7.25 3.28 -321.56 -1.05 -8.30 16 15 C -0.02 -0.47 10.59 83.49 0.88 0.41 16 16 C -0.04 -1.35 6.62 41.60 0.28 -1.07 16 17 C 0.23 9.92 6.82 85.63 0.58 10.51 16 18 N -0.74 -40.03 5.59 -347.17 -1.94 -41.97 16 19 C -0.24 -13.87 9.99 84.03 0.84 -13.03 16 20 H 0.09 4.64 7.83 -2.91 -0.02 4.62 16 21 C -0.08 -4.87 5.50 84.86 0.47 -4.40 16 22 N -0.98 -63.14 13.06 21.65 0.28 -62.86 16 23 Si 0.98 47.37 29.55 68.60 2.03 49.40 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 26 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 27 N -0.30 -12.37 12.41 -48.60 -0.60 -12.98 16 28 N -0.11 -3.82 13.16 37.02 0.49 -3.33 16 29 C 0.10 2.07 6.62 86.73 0.57 2.64 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.05 0.60 6.57 -2.39 -0.02 0.58 16 33 H 0.07 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.08 0.42 8.14 -2.39 -0.02 0.41 16 35 H 0.05 0.99 6.57 -2.39 -0.02 0.98 16 36 H 0.04 1.01 5.95 -2.39 -0.01 1.00 16 37 H 0.06 0.95 8.14 -2.38 -0.02 0.94 16 38 H 0.12 0.61 7.85 -2.39 -0.02 0.59 16 39 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.12 -0.16 7.48 -2.39 -0.02 -0.18 16 41 H 0.11 -0.16 8.14 -2.38 -0.02 -0.18 16 42 H 0.09 0.67 6.39 -2.39 -0.02 0.65 16 43 H 0.13 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.22 4.52 7.01 -2.91 -0.02 4.50 16 45 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 47 H 0.37 22.06 7.66 -92.71 -0.71 21.35 16 48 H 0.25 15.66 8.31 -92.71 -0.77 14.89 16 49 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.04 1.22 8.03 -2.39 -0.02 1.20 16 Total: -1.00 -87.98 402.13 3.53 -84.44 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.23 Total: 23.57 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 6.85 Total: 2.16 kcal Atomic # 7 Polarization: -135.81 SS G_CDS: -5.53 Total: -141.34 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: -0.04 Total: -18.23 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.40 kcal Total: -87.98 3.53 -84.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098664470.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.036 kcal (2) G-P(sol) polarization free energy of solvation -87.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds