Wall clock time and date at job start Tue Mar 31 2020 18:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 N 1.28513 * 124.44321 * 2 1 4 4 C 1.31136 * 109.05824 * 179.97438 * 3 2 1 5 5 C 1.40921 * 105.77621 * 359.97438 * 4 3 2 6 6 C 1.47804 * 127.23673 * 179.97438 * 5 4 3 7 7 O 1.21554 * 119.99771 * 353.04823 * 6 5 4 8 8 N 1.34773 * 119.99863 * 173.05130 * 6 5 4 9 9 C 1.46924 * 120.63171 * 353.21011 * 8 6 5 10 10 C 1.53188 * 108.77883 * 233.58547 * 9 8 6 11 11 C 1.53042 * 109.31440 * 305.36887 * 10 9 8 12 12 C 1.53002 * 109.46011 * 181.37991 * 11 10 9 13 13 C 1.53005 * 109.46925 * 59.97665 * 12 11 10 14 14 C 1.52994 * 109.47455 * 299.97275 * 12 11 10 15 15 C 1.53002 * 109.47026 * 179.97438 * 12 11 10 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 12 11 17 17 C 1.36937 * 120.00353 * 180.02562 * 16 15 12 18 18 H 1.08004 * 119.99238 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00331 * 180.02562 * 17 16 15 20 20 N 1.31623 * 119.99952 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00372 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47114 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47344 * 119.99569 * 21 19 17 24 24 H 1.48497 * 109.47814 * 240.00238 * 21 19 17 25 25 C 1.53041 * 109.52470 * 61.36871 * 11 10 9 26 26 C 1.46926 * 120.63145 * 173.19157 * 8 6 5 27 27 N 1.28590 * 124.44337 * 180.25350 * 2 1 3 28 28 H 1.09008 * 109.46780 * 90.02906 * 1 2 3 29 29 H 1.08996 * 109.46834 * 210.02822 * 1 2 3 30 30 H 1.09000 * 109.47316 * 330.03121 * 1 2 3 31 31 H 1.07999 * 127.11112 * 179.97438 * 4 3 2 32 32 H 1.09007 * 109.58546 * 113.80003 * 9 8 6 33 33 H 1.08997 * 109.70599 * 353.44610 * 9 8 6 34 34 H 1.09000 * 109.50111 * 185.41427 * 10 9 8 35 35 H 1.09007 * 109.49403 * 65.31579 * 10 9 8 36 36 H 1.08993 * 109.45797 * 301.35573 * 11 10 9 37 37 H 1.08993 * 109.46942 * 179.97438 * 13 12 11 38 38 H 1.09002 * 109.46895 * 299.99165 * 13 12 11 39 39 H 1.08994 * 109.47195 * 59.99436 * 13 12 11 40 40 H 1.08998 * 109.47077 * 300.00035 * 14 12 11 41 41 H 1.08997 * 109.47049 * 59.99907 * 14 12 11 42 42 H 1.08993 * 109.47445 * 179.97438 * 14 12 11 43 43 H 1.09008 * 109.46852 * 60.00477 * 15 12 11 44 44 H 1.08994 * 109.47283 * 300.00680 * 15 12 11 45 45 H 0.97000 * 120.00082 * 0.02562 * 16 15 12 46 46 H 0.96999 * 119.99776 * 180.02562 * 20 19 17 47 47 H 1.09000 * 109.49954 * 58.58176 * 25 11 10 48 48 H 1.09006 * 109.49656 * 178.67641 * 25 11 10 49 49 H 1.08996 * 109.58463 * 246.20215 * 26 8 6 50 50 H 1.09009 * 109.58212 * 6.48266 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1919 1.0598 0.0000 4 6 3.4563 0.7119 0.0006 5 6 3.4659 -0.6972 0.0015 6 6 4.6487 -1.5836 0.0019 7 8 5.7616 -1.1118 -0.1261 8 7 4.4932 -2.9147 0.1440 9 6 3.1741 -3.4862 0.4474 10 6 3.2946 -4.3718 1.6915 11 6 4.3940 -5.4126 1.4674 12 6 4.4938 -6.3209 2.6945 13 6 3.1561 -7.0304 2.9141 14 6 4.8328 -5.4789 3.9261 15 6 5.5925 -7.3620 2.4704 16 7 5.6877 -8.2321 3.6451 17 6 6.6085 -9.2453 3.6740 18 1 7.2642 -9.4031 2.8304 19 6 6.6983 -10.0700 4.7867 20 7 5.8988 -9.8780 5.8145 21 14 7.9539 -11.4526 4.8258 22 1 8.7257 -11.4562 3.5572 23 1 8.8807 -11.2475 5.9678 24 1 7.2540 -12.7527 4.9836 25 6 5.7324 -4.7037 1.2476 26 6 5.6395 -3.8221 -0.0018 27 7 2.1923 -1.0605 -0.0047 28 1 -0.3633 -0.0005 -1.0278 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3634 0.8903 0.5133 31 1 4.3130 1.3694 0.0003 32 1 2.8328 -4.0860 -0.3964 33 1 2.4610 -2.6840 0.6376 34 1 2.3460 -4.8776 1.8714 35 1 3.5479 -3.7551 2.5539 36 1 4.1525 -6.0126 0.5901 37 1 3.2274 -7.6778 3.7880 38 1 2.3735 -6.2887 3.0738 39 1 2.9146 -7.6302 2.0367 40 1 5.7858 -4.9736 3.7697 41 1 4.0502 -4.7373 4.0858 42 1 4.9035 -6.1260 4.8004 43 1 6.5455 -6.8565 2.3140 44 1 5.3511 -7.9618 1.5930 45 1 5.0985 -8.0906 4.4026 46 1 5.9619 -10.4541 6.5923 47 1 5.9624 -4.0838 2.1142 48 1 6.5191 -5.4458 1.1113 49 1 5.4994 -4.4492 -0.8822 50 1 6.5548 -3.2401 -0.1097 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101581059.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:56 Heat of formation + Delta-G solvation = 92.825327 kcal Electronic energy + Delta-G solvation = -29848.264175 eV Core-core repulsion = 25913.961495 eV Total energy + Delta-G solvation = -3934.302680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -44.04715 -40.35791 -38.69328 -36.20296 -34.27603 -33.78509 -33.15409 -31.42139 -31.24044 -29.78363 -28.47348 -26.87047 -26.07200 -25.39851 -24.00726 -23.31024 -22.39979 -22.20990 -21.06690 -19.59697 -18.06193 -17.71703 -17.41329 -17.27913 -16.96279 -16.09673 -15.38274 -15.16366 -14.74170 -14.57570 -14.31385 -14.02675 -13.94070 -13.81736 -13.53421 -13.48771 -13.24890 -12.91995 -12.88309 -12.57584 -12.29559 -12.19096 -11.87711 -11.63275 -11.44612 -11.32385 -11.00969 -10.92433 -10.87760 -10.75814 -10.67776 -10.57597 -10.32771 -10.11146 -10.06847 -9.93630 -9.81664 -9.61503 -9.46026 -8.82313 -8.72805 -6.84119 -5.72691 -2.99608 0.93940 1.60256 1.73504 2.76452 3.00308 3.45471 3.51312 3.52904 3.53333 4.25424 4.47451 4.57582 4.62069 4.65333 4.75751 4.81706 4.86298 4.90584 5.10351 5.26447 5.28244 5.33386 5.43371 5.53868 5.55495 5.60048 5.66362 5.68643 5.79055 5.86575 5.94886 6.05265 6.06898 6.13078 6.15247 6.22705 6.27185 6.38347 6.42611 6.46459 6.50081 6.64881 6.76853 6.82033 7.00691 7.02904 7.18020 7.69811 7.74622 7.93184 8.47401 9.58402 10.18667 10.52942 11.50591 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.002306 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.715763 B =12138.698349 C =12761.090716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.147 5.147 3 N -0.290 5.290 4 C 0.035 3.965 5 C -0.039 4.039 6 C 0.606 3.394 7 O -0.532 6.532 8 N -0.592 5.592 9 C 0.088 3.912 10 C -0.131 4.131 11 C -0.072 4.072 12 C -0.064 4.064 13 C -0.137 4.137 14 C -0.138 4.138 15 C 0.162 3.838 16 N -0.730 5.730 17 C -0.233 4.233 18 H 0.069 0.931 19 C -0.017 4.017 20 N -0.935 5.935 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.293 1.293 25 C -0.134 4.134 26 C 0.112 3.888 27 N -0.248 5.248 28 H 0.094 0.906 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.208 0.792 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.049 0.951 40 H 0.052 0.948 41 H 0.043 0.957 42 H 0.064 0.936 43 H 0.021 0.979 44 H 0.015 0.985 45 H 0.384 0.616 46 H 0.253 0.747 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.070 0.930 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.237 21.055 -13.328 28.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.049 5.049 3 N -0.130 5.130 4 C -0.148 4.148 5 C -0.202 4.202 6 C 0.391 3.609 7 O -0.407 6.407 8 N -0.324 5.324 9 C -0.035 4.035 10 C -0.169 4.169 11 C -0.091 4.091 12 C -0.065 4.065 13 C -0.194 4.194 14 C -0.195 4.195 15 C 0.034 3.966 16 N -0.375 5.375 17 C -0.365 4.365 18 H 0.087 0.913 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.220 1.220 24 H -0.220 1.220 25 C -0.171 4.171 26 C -0.010 4.010 27 N -0.097 5.097 28 H 0.112 0.888 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.225 0.775 32 H 0.085 0.915 33 H 0.134 0.866 34 H 0.097 0.903 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.083 0.917 43 H 0.038 0.962 44 H 0.033 0.967 45 H 0.219 0.781 46 H 0.063 0.937 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.088 0.912 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.876 21.197 -13.463 28.690 hybrid contribution 1.257 -0.903 0.361 1.589 sum -12.619 20.293 -13.102 27.253 Atomic orbital electron populations 1.22287 0.69673 1.06387 1.05417 1.48229 1.09317 0.99449 1.47871 1.74026 1.03868 1.15520 1.19540 1.24841 0.94294 0.93623 1.02077 1.23121 0.91248 0.94829 1.10953 1.16732 0.85874 0.81290 0.77020 1.90806 1.24108 1.74812 1.50938 1.47941 1.10914 1.05046 1.68512 1.22441 0.84062 0.99206 0.97784 1.22094 0.99944 0.97404 0.97451 1.21112 0.94202 0.95442 0.98383 1.20684 0.96466 0.95061 0.94274 1.21842 0.95485 0.99638 1.02422 1.21882 1.00259 0.99140 0.98207 1.20736 0.94435 0.90442 0.90942 1.42442 1.43424 1.34967 1.16621 1.19283 1.10865 1.05829 1.00519 0.91294 1.24710 0.99833 0.99963 0.96706 1.69667 1.40850 1.41200 1.06709 0.86140 0.80826 0.82182 0.77210 1.20626 1.21971 1.21986 1.22116 0.98585 0.98935 0.97511 1.21767 0.89022 0.91720 0.98449 1.74327 1.03121 1.14736 1.17492 0.88777 0.87444 0.87519 0.77488 0.91509 0.86604 0.90324 0.91324 0.91178 0.91576 0.93607 0.93221 0.92937 0.93763 0.91702 0.96173 0.96709 0.78078 0.93680 0.91002 0.89659 0.91221 0.88898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.30 11.55 59.85 0.69 0.99 16 2 N -0.15 -1.20 4.35 -16.63 -0.07 -1.27 16 3 N -0.29 -2.76 12.01 30.90 0.37 -2.39 16 4 C 0.03 0.35 12.05 -16.83 -0.20 0.14 16 5 C -0.04 -0.44 6.87 -82.68 -0.57 -1.01 16 6 C 0.61 7.81 7.69 -12.35 -0.09 7.71 16 7 O -0.53 -8.15 16.38 5.32 0.09 -8.06 16 8 N -0.59 -6.90 2.97 -173.90 -0.52 -7.42 16 9 C 0.09 0.89 6.12 -3.71 -0.02 0.86 16 10 C -0.13 -1.41 4.65 -26.61 -0.12 -1.53 16 11 C -0.07 -0.90 1.51 -90.58 -0.14 -1.04 16 12 C -0.06 -1.00 0.33 -154.51 -0.05 -1.05 16 13 C -0.14 -2.11 7.95 37.16 0.30 -1.81 16 14 C -0.14 -2.20 7.60 37.15 0.28 -1.92 16 15 C 0.16 3.20 4.80 -4.04 -0.02 3.18 16 16 N -0.73 -18.24 5.00 -59.91 -0.30 -18.54 16 17 C -0.23 -6.55 9.99 -15.06 -0.15 -6.70 16 18 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 19 C -0.02 -0.48 5.50 -17.43 -0.10 -0.58 16 20 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 21 Si 0.90 22.62 29.55 -169.99 -5.02 17.60 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.94 16 25 C -0.13 -1.66 4.65 -26.61 -0.12 -1.78 16 26 C 0.11 1.29 6.44 -3.71 -0.02 1.26 16 27 N -0.25 -2.43 8.67 33.42 0.29 -2.14 16 28 H 0.09 0.14 8.14 -51.92 -0.42 -0.29 16 29 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 30 H 0.11 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.21 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.12 1.13 4.21 -61.45 -0.26 0.88 16 34 H 0.08 0.79 6.36 -51.93 -0.33 0.46 16 35 H 0.07 0.81 6.51 -51.93 -0.34 0.47 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.22 6.86 -51.93 -0.36 0.86 16 38 H 0.04 0.59 6.40 -51.93 -0.33 0.26 16 39 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.84 6.46 -51.93 -0.34 0.50 16 41 H 0.04 0.61 6.46 -51.93 -0.34 0.28 16 42 H 0.06 1.22 6.86 -51.93 -0.36 0.86 16 43 H 0.02 0.41 6.40 -51.92 -0.33 0.08 16 44 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.38 10.05 5.36 -40.82 -0.22 9.83 16 46 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.07 0.97 6.51 -51.93 -0.34 0.63 16 48 H 0.09 1.11 6.36 -51.93 -0.33 0.78 16 49 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.09 1.14 7.00 -51.92 -0.36 0.77 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -34.34 382.09 -6.60 -40.94 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -7.58 Total: 6.41 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: -0.34 Total: -3.26 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 0.50 Total: -59.38 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.09 Total: -8.06 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.34 -6.60 -40.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101581059.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.764 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds