Wall clock time and date at job start Tue Mar 31 2020 18:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 C 1.53001 * 109.46939 * 239.99828 * 2 1 3 5 5 N 1.46505 * 109.47092 * 60.00556 * 4 2 1 6 6 C 1.36936 * 120.00051 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99762 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99665 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00216 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99703 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47063 * 59.99732 * 10 8 6 12 12 H 1.48505 * 109.46904 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46932 * 299.99864 * 10 8 6 14 14 C 1.53004 * 109.46993 * 120.00288 * 2 1 3 15 15 C 1.53346 * 109.40818 * 60.12097 * 14 2 1 16 16 C 1.53195 * 109.14901 * 178.68126 * 15 14 2 17 17 N 1.46919 * 108.89273 * 54.57640 * 16 15 14 18 18 C 1.34778 * 120.63255 * 126.34238 * 17 16 15 19 19 O 1.21279 * 120.00169 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.50708 * 109.47079 * 180.02562 * 20 18 17 22 22 N 1.33234 * 125.52424 * 269.69248 * 21 20 18 23 23 C 1.30837 * 109.82728 * 179.85172 * 22 21 20 24 24 N 1.34431 * 108.07502 * 0.40932 * 23 22 21 25 25 H 0.96999 * 126.82285 * 179.78996 * 24 23 22 26 26 N 1.30713 * 125.52578 * 89.99931 * 21 20 18 27 27 C 1.46933 * 118.74003 * 306.32349 * 17 16 15 28 28 C 1.53034 * 109.45866 * 299.99720 * 14 2 1 29 29 H 1.09005 * 109.47024 * 299.99658 * 1 2 3 30 30 H 1.08996 * 109.47097 * 59.99837 * 1 2 3 31 31 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47467 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47176 * 300.00114 * 3 2 1 34 34 H 1.09005 * 109.46800 * 60.00206 * 3 2 1 35 35 H 1.09007 * 109.46826 * 179.97438 * 4 2 1 36 36 H 1.08991 * 109.47496 * 300.00188 * 4 2 1 37 37 H 0.97002 * 119.99498 * 359.97438 * 5 4 2 38 38 H 0.97002 * 119.99504 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.45592 * 180.02562 * 14 2 1 40 40 H 1.08997 * 109.68637 * 58.71335 * 15 14 2 41 41 H 1.09002 * 109.47277 * 298.51591 * 15 14 2 42 42 H 1.09002 * 109.58720 * 294.71670 * 16 15 14 43 43 H 1.08996 * 109.58651 * 174.43567 * 16 15 14 44 44 H 1.09001 * 109.47488 * 299.99559 * 20 18 17 45 45 H 1.09001 * 109.47269 * 59.99982 * 20 18 17 46 46 H 1.07996 * 125.96119 * 180.19422 * 23 22 21 47 47 H 1.08994 * 109.58580 * 173.39910 * 27 17 16 48 48 H 1.09006 * 109.57831 * 293.67403 * 27 17 16 49 49 H 1.08994 * 109.50232 * 61.42256 * 28 14 2 50 50 H 1.09007 * 109.52628 * 301.33917 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.5517 -0.0306 -2.4455 6 6 1.8820 -0.4988 -3.6892 7 1 2.5028 -1.3769 -3.7882 8 6 1.4189 0.1554 -4.8225 9 7 0.6619 1.2253 -4.7017 10 14 1.8701 -0.4828 -6.5192 11 1 1.3673 -1.8713 -6.6756 12 1 1.2546 0.3857 -7.5546 13 1 3.3467 -0.4706 -6.6760 14 6 2.0400 -0.7213 1.2492 15 6 1.5305 -2.1677 1.2462 16 6 2.0714 -2.8936 2.4820 17 7 1.7080 -2.1267 3.6813 18 6 1.0551 -2.7167 4.7021 19 8 0.7616 -3.8916 4.6359 20 6 0.6899 -1.9166 5.9258 21 6 -0.0273 -2.8039 6.9105 22 7 -1.3450 -2.9930 6.9653 23 6 -1.6342 -3.8241 7.9336 24 7 -0.4855 -4.1819 8.5331 25 1 -0.3860 -4.7859 9.2856 26 7 0.5422 -3.5084 7.8529 27 6 2.0703 -0.7042 3.7469 28 6 1.5297 0.0003 2.4986 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 0.9938 0.7579 -2.3564 38 1 0.3380 1.6821 -5.4938 39 1 3.1300 -0.7208 1.2492 40 1 1.8747 -2.6763 0.3457 41 1 0.4408 -2.1691 1.2713 42 1 3.1564 -2.9727 2.4137 43 1 1.6354 -3.8909 2.5400 44 1 1.5959 -1.5221 6.3858 45 1 0.0387 -1.0909 5.6390 46 1 -2.6235 -4.1608 8.2060 47 1 1.6314 -0.2561 4.6383 48 1 3.1551 -0.6049 3.7843 49 1 0.4401 -0.0214 2.5118 50 1 1.8729 1.0349 2.4875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101589596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:04 Heat of formation + Delta-G solvation = 55.037090 kcal Electronic energy + Delta-G solvation = -29401.140542 eV Core-core repulsion = 25465.199241 eV Total energy + Delta-G solvation = -3935.941301 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.43590 -40.43830 -38.73067 -36.16614 -33.81133 -33.62987 -32.16755 -31.53588 -31.30485 -29.81260 -29.14398 -26.84524 -25.85871 -25.08254 -23.34694 -23.16333 -22.49623 -21.51157 -20.55834 -19.14484 -18.60559 -18.09440 -17.47774 -16.99491 -16.16065 -15.87333 -15.47679 -15.23220 -14.73355 -14.57866 -14.26585 -14.02909 -13.93299 -13.79023 -13.62920 -13.14371 -13.08698 -12.82880 -12.56588 -12.48146 -12.31205 -12.10611 -11.80662 -11.64084 -11.41199 -11.12701 -10.94132 -10.85743 -10.73119 -10.63797 -10.51911 -10.37768 -10.20155 -10.15559 -10.13784 -9.93959 -9.80381 -9.61367 -9.48182 -8.80610 -8.72087 -6.83424 -5.71520 -2.98488 1.26890 2.28258 2.44768 2.47727 2.97233 3.47194 3.51516 3.52456 3.72594 4.25170 4.34037 4.56811 4.60931 4.67173 4.82038 4.88179 4.98594 5.06327 5.13753 5.22955 5.27236 5.40913 5.53926 5.54020 5.65554 5.67009 5.69503 5.83967 5.86452 5.92567 6.00628 6.05874 6.08167 6.13059 6.15659 6.25745 6.38462 6.43312 6.45388 6.48455 6.64833 6.66783 6.77810 6.82551 7.01355 7.03638 7.23920 7.73441 7.74502 8.01320 8.48545 9.59398 10.19637 10.54020 11.51549 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.002057 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.925161 B =13611.612114 C =13808.447650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.137 4.137 4 C 0.161 3.839 5 N -0.729 5.729 6 C -0.235 4.235 7 H 0.068 0.932 8 C -0.016 4.016 9 N -0.935 5.935 10 Si 0.906 3.094 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.287 1.287 14 C -0.071 4.071 15 C -0.134 4.134 16 C 0.113 3.887 17 N -0.607 5.607 18 C 0.524 3.476 19 O -0.535 6.535 20 C -0.049 4.049 21 C 0.250 3.750 22 N -0.534 5.534 23 C 0.263 3.737 24 N -0.484 5.484 25 H 0.441 0.559 26 N -0.305 5.305 27 C 0.104 3.896 28 C -0.134 4.134 29 H 0.045 0.955 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.065 0.935 34 H 0.046 0.954 35 H 0.015 0.985 36 H 0.020 0.980 37 H 0.384 0.616 38 H 0.254 0.746 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.223 0.777 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.073 0.927 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 -5.118 29.011 29.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.065 4.065 3 C -0.194 4.194 4 C 0.034 3.966 5 N -0.374 5.374 6 C -0.367 4.367 7 H 0.086 0.914 8 C -0.211 4.211 9 N -0.584 5.584 10 Si 0.737 3.263 11 H -0.214 1.214 12 H -0.218 1.218 13 H -0.214 1.214 14 C -0.090 4.090 15 C -0.171 4.171 16 C -0.009 4.009 17 N -0.341 5.341 18 C 0.310 3.690 19 O -0.412 6.412 20 C -0.091 4.091 21 C -0.034 4.034 22 N -0.261 5.261 23 C -0.036 4.036 24 N -0.202 5.202 25 H 0.287 0.713 26 N -0.135 5.135 27 C -0.018 4.018 28 C -0.172 4.172 29 H 0.064 0.936 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.084 0.916 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.219 0.781 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.102 0.898 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.240 0.760 47 H 0.100 0.900 48 H 0.090 0.910 49 H 0.091 0.909 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.377 -5.659 28.703 29.258 hybrid contribution -0.136 -0.554 -0.468 0.738 sum -0.513 -6.213 28.236 28.916 Atomic orbital electron populations 1.21890 0.94723 1.01561 1.01362 1.20680 0.95853 0.95575 0.94359 1.21850 1.00488 0.95600 1.01504 1.20741 0.95729 0.94380 0.85757 1.42425 1.61320 1.33382 1.00304 1.19189 1.25323 1.08429 0.83747 0.91423 1.24710 1.00686 0.98046 0.97699 1.69644 1.39480 1.20951 1.28329 0.86286 0.77781 0.77831 0.84409 1.21375 1.21766 1.21387 1.21142 0.99934 0.94070 0.93895 1.22172 1.01797 0.95889 0.97287 1.21667 0.99735 0.96121 0.83395 1.48077 1.57320 1.11086 1.17642 1.20113 0.77503 0.87585 0.83760 1.90719 1.53601 1.16387 1.80464 1.19945 1.01344 0.96695 0.91134 1.23316 0.88632 0.96648 0.94775 1.70371 1.14870 1.19942 1.20954 1.26089 0.93753 0.93422 0.90327 1.48075 1.04986 1.38112 1.29046 0.71310 1.77963 1.11315 1.13022 1.11184 1.21869 1.00520 0.80002 0.99442 1.22107 1.01846 0.99631 0.93618 0.93629 0.91705 0.92960 0.93227 0.91564 0.93531 0.96727 0.96210 0.78056 0.93575 0.91172 0.89798 0.91047 0.91538 0.89266 0.86518 0.85888 0.76049 0.89959 0.91008 0.90879 0.90100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 7.60 37.16 0.28 -1.88 16 2 C -0.06 -0.97 0.33 -154.51 -0.05 -1.03 16 3 C -0.14 -2.07 7.95 37.15 0.30 -1.77 16 4 C 0.16 3.18 4.80 -4.04 -0.02 3.16 16 5 N -0.73 -18.20 5.00 -59.91 -0.30 -18.50 16 6 C -0.24 -6.61 9.99 -15.06 -0.15 -6.76 16 7 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 8 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 9 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 10 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 14 C -0.07 -0.85 1.51 -90.42 -0.14 -0.98 16 15 C -0.13 -1.64 4.66 -26.45 -0.12 -1.77 16 16 C 0.11 1.30 6.42 -3.71 -0.02 1.27 16 17 N -0.61 -6.44 2.97 -172.77 -0.51 -6.95 16 18 C 0.52 6.44 7.69 -10.99 -0.08 6.36 16 19 O -0.54 -8.87 15.45 5.56 0.09 -8.78 16 20 C -0.05 -0.45 4.67 -29.03 -0.14 -0.59 16 21 C 0.25 2.89 6.63 -156.85 -1.04 1.85 16 22 N -0.53 -6.05 11.19 -11.97 -0.13 -6.18 16 23 C 0.26 1.88 13.13 -90.65 -1.19 0.69 16 24 N -0.48 -3.49 7.45 29.53 0.22 -3.27 16 25 H 0.44 1.39 8.96 -182.34 -1.63 -0.25 16 26 N -0.31 -3.45 12.80 32.42 0.41 -3.03 16 27 C 0.10 0.81 6.34 -3.71 -0.02 0.79 16 28 C -0.13 -1.26 4.65 -26.62 -0.12 -1.38 16 29 H 0.04 0.61 6.46 -51.93 -0.34 0.27 16 30 H 0.06 1.21 6.86 -51.93 -0.36 0.85 16 31 H 0.05 0.83 6.46 -51.93 -0.34 0.49 16 32 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 33 H 0.07 1.20 6.86 -51.93 -0.36 0.85 16 34 H 0.05 0.57 6.40 -51.93 -0.33 0.24 16 35 H 0.01 0.30 8.14 -51.92 -0.42 -0.12 16 36 H 0.02 0.40 6.39 -51.93 -0.33 0.07 16 37 H 0.38 10.02 5.36 -40.82 -0.22 9.80 16 38 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 1.11 6.37 -51.93 -0.33 0.78 16 41 H 0.07 0.96 6.51 -51.93 -0.34 0.62 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.09 1.17 7.00 -51.93 -0.36 0.81 16 44 H 0.12 0.77 7.94 -51.93 -0.41 0.36 16 45 H 0.12 0.90 7.69 -51.93 -0.40 0.50 16 46 H 0.22 0.40 8.06 -52.49 -0.42 -0.02 16 47 H 0.08 0.44 5.93 -51.93 -0.31 0.14 16 48 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 49 H 0.07 0.74 6.51 -51.93 -0.34 0.40 16 50 H 0.08 0.69 6.36 -51.92 -0.33 0.36 16 LS Contribution 383.67 15.07 5.78 5.78 Total: -1.00 -37.80 383.67 -10.17 -47.97 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.80 Total: 5.51 kcal Atomic # 6 Polarization: 0.04 SS G_CDS: -2.62 Total: -2.58 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: 0.41 Total: -65.51 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: 0.09 Total: -8.78 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.80 -10.17 -47.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101589596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.008 kcal (2) G-P(sol) polarization free energy of solvation -37.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds