Wall clock time and date at job start Tue Mar 31 2020 18:39:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47305 * 2 1 4 4 C 1.53001 * 109.46939 * 239.99828 * 2 1 3 5 5 N 1.46505 * 109.47092 * 60.00556 * 4 2 1 6 6 C 1.36936 * 120.00051 * 180.02562 * 5 4 2 7 7 H 1.07999 * 119.99762 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99665 * 179.97438 * 6 5 4 9 9 N 1.31618 * 120.00216 * 359.97438 * 8 6 5 10 10 Si 1.86805 * 119.99703 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.47063 * 59.99732 * 10 8 6 12 12 H 1.48505 * 109.46904 * 179.97438 * 10 8 6 13 13 H 1.48495 * 109.46932 * 299.99864 * 10 8 6 14 14 C 1.53004 * 109.46993 * 120.00288 * 2 1 3 15 15 C 1.53346 * 109.40818 * 60.12097 * 14 2 1 16 16 C 1.53195 * 109.14901 * 178.68126 * 15 14 2 17 17 N 1.46919 * 108.89273 * 54.57640 * 16 15 14 18 18 C 1.34778 * 120.63255 * 126.34238 * 17 16 15 19 19 O 1.21279 * 120.00169 * 359.97438 * 18 17 16 20 20 C 1.50698 * 120.00023 * 179.97438 * 18 17 16 21 21 C 1.50708 * 109.47079 * 180.02562 * 20 18 17 22 22 N 1.33234 * 125.52424 * 269.69248 * 21 20 18 23 23 C 1.30837 * 109.82728 * 179.85172 * 22 21 20 24 24 N 1.34431 * 108.07502 * 0.40932 * 23 22 21 25 25 H 0.96999 * 126.82285 * 179.78996 * 24 23 22 26 26 N 1.30713 * 125.52578 * 89.99931 * 21 20 18 27 27 C 1.46933 * 118.74003 * 306.32349 * 17 16 15 28 28 C 1.53034 * 109.45866 * 299.99720 * 14 2 1 29 29 H 1.09005 * 109.47024 * 299.99658 * 1 2 3 30 30 H 1.08996 * 109.47097 * 59.99837 * 1 2 3 31 31 H 1.09001 * 109.47033 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47467 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47176 * 300.00114 * 3 2 1 34 34 H 1.09005 * 109.46800 * 60.00206 * 3 2 1 35 35 H 1.09007 * 109.46826 * 179.97438 * 4 2 1 36 36 H 1.08991 * 109.47496 * 300.00188 * 4 2 1 37 37 H 0.97002 * 119.99498 * 359.97438 * 5 4 2 38 38 H 0.97002 * 119.99504 * 180.02562 * 9 8 6 39 39 H 1.09000 * 109.45592 * 180.02562 * 14 2 1 40 40 H 1.08997 * 109.68637 * 58.71335 * 15 14 2 41 41 H 1.09002 * 109.47277 * 298.51591 * 15 14 2 42 42 H 1.09002 * 109.58720 * 294.71670 * 16 15 14 43 43 H 1.08996 * 109.58651 * 174.43567 * 16 15 14 44 44 H 1.09001 * 109.47488 * 299.99559 * 20 18 17 45 45 H 1.09001 * 109.47269 * 59.99982 * 20 18 17 46 46 H 1.07996 * 125.96119 * 180.19422 * 23 22 21 47 47 H 1.08994 * 109.58580 * 173.39910 * 27 17 16 48 48 H 1.09006 * 109.57831 * 293.67403 * 27 17 16 49 49 H 1.08994 * 109.50232 * 61.42256 * 28 14 2 50 50 H 1.09007 * 109.52628 * 301.33917 * 28 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 1.5517 -0.0306 -2.4455 6 6 1.8820 -0.4988 -3.6892 7 1 2.5028 -1.3769 -3.7882 8 6 1.4189 0.1554 -4.8225 9 7 0.6619 1.2253 -4.7017 10 14 1.8701 -0.4828 -6.5192 11 1 1.3673 -1.8713 -6.6756 12 1 1.2546 0.3857 -7.5546 13 1 3.3467 -0.4706 -6.6760 14 6 2.0400 -0.7213 1.2492 15 6 1.5305 -2.1677 1.2462 16 6 2.0714 -2.8936 2.4820 17 7 1.7080 -2.1267 3.6813 18 6 1.0551 -2.7167 4.7021 19 8 0.7616 -3.8916 4.6359 20 6 0.6899 -1.9166 5.9258 21 6 -0.0273 -2.8039 6.9105 22 7 -1.3450 -2.9930 6.9653 23 6 -1.6342 -3.8241 7.9336 24 7 -0.4855 -4.1819 8.5331 25 1 -0.3860 -4.7859 9.2856 26 7 0.5422 -3.5084 7.8529 27 6 2.0703 -0.7042 3.7469 28 6 1.5297 0.0003 2.4986 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9562 0.8901 35 1 3.1300 -0.7209 -1.2495 36 1 1.6766 -1.7489 -1.2493 37 1 0.9938 0.7579 -2.3564 38 1 0.3380 1.6821 -5.4938 39 1 3.1300 -0.7208 1.2492 40 1 1.8747 -2.6763 0.3457 41 1 0.4408 -2.1691 1.2713 42 1 3.1564 -2.9727 2.4137 43 1 1.6354 -3.8909 2.5400 44 1 1.5959 -1.5221 6.3858 45 1 0.0387 -1.0909 5.6390 46 1 -2.6235 -4.1608 8.2060 47 1 1.6314 -0.2561 4.6383 48 1 3.1551 -0.6049 3.7843 49 1 0.4401 -0.0214 2.5118 50 1 1.8729 1.0349 2.4875 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101589596.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:03 Heat of formation + Delta-G solvation = 29.320464 kcal Electronic energy + Delta-G solvation = -29402.255698 eV Core-core repulsion = 25465.199241 eV Total energy + Delta-G solvation = -3937.056458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.07019 -41.36295 -39.85552 -37.36095 -35.48140 -34.41376 -33.10823 -32.75075 -32.25636 -31.29154 -29.90539 -28.10494 -27.46019 -26.26661 -24.66645 -23.95686 -23.57163 -22.51480 -21.41905 -20.02579 -19.48096 -19.20178 -18.98229 -18.15846 -17.00530 -16.67612 -16.63277 -16.18804 -16.05547 -15.84728 -15.43223 -15.23215 -15.09079 -14.94336 -14.61637 -14.44923 -14.12296 -14.04130 -13.91473 -13.20601 -13.15255 -13.08790 -13.01587 -12.97219 -12.80528 -12.69539 -12.57105 -12.22193 -12.13011 -11.94998 -11.87209 -11.68137 -11.24373 -11.20186 -11.07885 -11.00841 -10.98007 -10.88270 -10.79516 -10.53327 -9.60667 -8.91740 -7.92246 -5.18744 0.65122 1.46494 1.49411 1.55440 1.59559 1.69174 1.86206 2.22500 2.57654 3.16872 3.40638 3.56937 3.68689 3.77034 3.81131 3.89670 4.14168 4.18430 4.24447 4.32978 4.35445 4.41329 4.43704 4.44387 4.53380 4.57906 4.69037 4.87298 4.88847 4.92621 4.97766 5.01771 5.05748 5.07562 5.17073 5.22509 5.24858 5.28032 5.30956 5.35203 5.37018 5.48633 5.51363 5.62941 5.71480 5.74464 6.26819 6.31079 6.42213 7.10701 7.14586 7.37382 8.17521 8.40445 9.31181 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.027393 B = 0.002057 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.925161 B =13611.612114 C =13808.447650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.055 4.055 3 C -0.132 4.132 4 C 0.158 3.842 5 N -0.740 5.740 6 C -0.242 4.242 7 H 0.070 0.930 8 C -0.077 4.077 9 N -0.969 5.969 10 Si 0.971 3.029 11 H -0.281 1.281 12 H -0.295 1.295 13 H -0.278 1.278 14 C -0.063 4.063 15 C -0.127 4.127 16 C 0.118 3.882 17 N -0.604 5.604 18 C 0.520 3.480 19 O -0.588 6.588 20 C -0.045 4.045 21 C 0.231 3.769 22 N -0.577 5.577 23 C 0.273 3.727 24 N -0.475 5.475 25 H 0.457 0.543 26 N -0.340 5.340 27 C 0.102 3.898 28 C -0.130 4.130 29 H 0.074 0.926 30 H 0.028 0.972 31 H 0.044 0.956 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.081 0.919 35 H 0.014 0.986 36 H 0.015 0.985 37 H 0.376 0.624 38 H 0.250 0.750 39 H 0.080 0.920 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.145 0.855 45 H 0.144 0.856 46 H 0.271 0.729 47 H 0.115 0.885 48 H 0.091 0.909 49 H 0.067 0.933 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.210 -4.717 31.407 31.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.055 4.055 3 C -0.189 4.189 4 C 0.031 3.969 5 N -0.383 5.383 6 C -0.374 4.374 7 H 0.088 0.912 8 C -0.269 4.269 9 N -0.620 5.620 10 Si 0.800 3.200 11 H -0.207 1.207 12 H -0.221 1.221 13 H -0.204 1.204 14 C -0.082 4.082 15 C -0.165 4.165 16 C -0.005 4.005 17 N -0.336 5.336 18 C 0.308 3.692 19 O -0.469 6.469 20 C -0.086 4.086 21 C -0.052 4.052 22 N -0.306 5.306 23 C -0.025 4.025 24 N -0.195 5.195 25 H 0.306 0.694 26 N -0.170 5.170 27 C -0.019 4.019 28 C -0.168 4.168 29 H 0.093 0.907 30 H 0.047 0.953 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.100 0.900 35 H 0.031 0.969 36 H 0.033 0.967 37 H 0.210 0.790 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.163 0.837 45 H 0.162 0.838 46 H 0.286 0.714 47 H 0.133 0.867 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.265 -5.269 31.146 31.590 hybrid contribution -0.350 -0.764 -1.147 1.422 sum -0.085 -6.033 29.999 30.600 Atomic orbital electron populations 1.21820 0.95139 1.00948 1.00964 1.20592 0.95365 0.95782 0.93765 1.21797 1.00695 0.95064 1.01340 1.20938 0.95454 0.94296 0.86168 1.42627 1.61227 1.33405 1.01088 1.19590 1.24485 1.08141 0.85223 0.91155 1.25514 1.01369 0.98669 1.01370 1.69804 1.40994 1.22319 1.28850 0.85251 0.77730 0.77205 0.79825 1.20735 1.22108 1.20447 1.21075 1.00395 0.93286 0.93436 1.22060 1.00830 0.96477 0.97153 1.21512 1.00267 0.95164 0.83564 1.48171 1.56496 1.12242 1.16705 1.20683 0.76672 0.87183 0.84660 1.90691 1.55767 1.18817 1.81586 1.20065 1.02841 0.96295 0.89443 1.23724 0.89078 0.97146 0.95245 1.70357 1.15165 1.22034 1.23042 1.26990 0.95171 0.91602 0.88716 1.48020 1.04429 1.37849 1.29199 0.69386 1.77845 1.13177 1.13965 1.12014 1.22135 1.01971 0.77888 0.99882 1.22090 1.01567 1.00433 0.92690 0.90687 0.95290 0.93707 0.92786 0.95305 0.90050 0.96854 0.96694 0.78995 0.94111 0.90211 0.91355 0.92492 0.90101 0.91525 0.83722 0.83825 0.71406 0.86689 0.89058 0.91389 0.88147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.10 7.60 71.98 0.55 -3.55 16 2 C -0.05 -1.62 0.33 -52.18 -0.02 -1.63 16 3 C -0.13 -3.78 7.95 71.98 0.57 -3.21 16 4 C 0.16 6.28 4.80 86.38 0.41 6.70 16 5 N -0.74 -37.91 5.00 -343.44 -1.72 -39.63 16 6 C -0.24 -13.82 9.99 84.03 0.84 -12.98 16 7 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 8 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 9 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 10 Si 0.97 47.12 29.55 68.60 2.03 49.15 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 14 C -0.06 -1.36 1.51 -10.67 -0.02 -1.38 16 15 C -0.13 -3.07 4.66 30.78 0.14 -2.92 16 16 C 0.12 2.62 6.42 86.36 0.55 3.17 16 17 N -0.60 -11.54 2.97 -818.91 -2.43 -13.98 16 18 C 0.52 12.14 7.69 87.66 0.67 12.82 16 19 O -0.59 -19.73 15.45 -3.03 -0.05 -19.77 16 20 C -0.04 -0.73 4.67 29.10 0.14 -0.59 16 21 C 0.23 5.09 6.63 138.64 0.92 6.01 16 22 N -0.58 -12.36 11.19 -191.80 -2.15 -14.51 16 23 C 0.27 3.37 13.13 180.36 2.37 5.74 16 24 N -0.48 -6.13 7.45 -60.49 -0.45 -6.58 16 25 H 0.46 2.13 8.96 -213.10 -1.91 0.22 16 26 N -0.34 -7.33 12.80 -51.33 -0.66 -7.98 16 27 C 0.10 1.17 6.34 86.36 0.55 1.72 16 28 C -0.13 -1.95 4.65 30.67 0.14 -1.81 16 29 H 0.07 1.87 6.46 -2.38 -0.02 1.85 16 30 H 0.03 1.10 6.86 -2.39 -0.02 1.08 16 31 H 0.04 1.44 6.46 -2.39 -0.02 1.42 16 32 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.03 1.04 6.86 -2.39 -0.02 1.02 16 34 H 0.08 1.75 6.40 -2.38 -0.02 1.73 16 35 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 36 H 0.02 0.62 6.39 -2.39 -0.02 0.61 16 37 H 0.38 20.37 5.36 -92.71 -0.50 19.88 16 38 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.07 1.84 6.37 -2.39 -0.02 1.82 16 41 H 0.06 1.53 6.51 -2.39 -0.02 1.52 16 42 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.07 1.81 7.00 -2.39 -0.02 1.79 16 44 H 0.15 1.44 7.94 -2.39 -0.02 1.42 16 45 H 0.14 1.66 7.69 -2.39 -0.02 1.64 16 46 H 0.27 0.11 8.06 -2.91 -0.02 0.09 16 47 H 0.12 0.64 5.93 -2.39 -0.01 0.62 16 48 H 0.09 0.79 8.14 -2.38 -0.02 0.78 16 49 H 0.07 1.14 6.51 -2.39 -0.02 1.12 16 50 H 0.10 1.20 6.36 -2.38 -0.02 1.18 16 Total: -1.00 -86.13 383.67 1.72 -84.40 By element: Atomic # 1 Polarization: 26.06 SS G_CDS: -1.42 Total: 24.63 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 8.29 Total: 4.03 kcal Atomic # 7 Polarization: -135.32 SS G_CDS: -7.12 Total: -142.44 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.05 Total: -19.77 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -86.13 1.72 -84.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101589596.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.721 kcal (2) G-P(sol) polarization free energy of solvation -86.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds