Wall clock time and date at job start Tue Mar 31 2020 19:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46494 * 109.47530 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59623 * 124.99990 * 4 3 2 6 6 C 1.36596 * 106.84423 * 180.02562 * 5 4 3 7 7 C 1.47518 * 125.77095 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00381 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99515 * 179.97438 * 7 6 5 10 10 C 1.48142 * 127.84184 * 0.02842 * 9 7 6 11 11 C 1.54388 * 104.62164 * 140.43167 * 10 9 7 12 12 H 1.09001 * 110.34478 * 142.73153 * 11 10 9 13 13 C 1.52999 * 110.43354 * 264.95067 * 11 10 9 14 14 C 1.54287 * 104.95908 * 23.86856 * 11 10 9 15 15 H 1.09005 * 110.34229 * 241.02745 * 14 11 10 16 16 C 1.52997 * 110.34642 * 118.87116 * 14 11 10 17 17 C 1.53000 * 109.47060 * 175.00176 * 16 14 11 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00147 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99891 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47166 * 90.00248 * 23 21 19 25 25 H 1.48501 * 109.46982 * 210.00125 * 23 21 19 26 26 H 1.48494 * 109.47221 * 330.00034 * 23 21 19 27 27 C 1.48150 * 127.83594 * 180.02562 * 9 7 6 28 28 N 1.34403 * 108.45594 * 0.24158 * 6 5 4 29 29 N 1.28766 * 109.52086 * 359.58990 * 28 6 5 30 30 H 1.08997 * 109.47146 * 299.99568 * 1 2 3 31 31 H 1.09001 * 109.47252 * 59.99650 * 1 2 3 32 32 H 1.09008 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46895 * 240.00516 * 2 1 3 34 34 H 1.09001 * 109.47252 * 120.00350 * 2 1 3 35 35 H 1.09005 * 109.46766 * 60.00437 * 3 2 1 36 36 H 1.09001 * 109.47294 * 300.00324 * 3 2 1 37 37 H 1.08004 * 126.57949 * 0.02562 * 5 4 3 38 38 H 1.09000 * 110.40764 * 21.64574 * 10 9 7 39 39 H 1.09001 * 110.40859 * 259.21667 * 10 9 7 40 40 H 1.08994 * 109.47185 * 175.58622 * 13 11 10 41 41 H 1.08994 * 109.46794 * 295.58749 * 13 11 10 42 42 H 1.09003 * 109.46759 * 55.58755 * 13 11 10 43 43 H 1.09002 * 109.47153 * 54.99857 * 16 14 11 44 44 H 1.09001 * 109.46832 * 295.00047 * 16 14 11 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 47 47 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 48 48 H 0.96996 * 119.99724 * 180.02562 * 22 21 19 49 49 H 1.09006 * 110.40392 * 100.78195 * 27 9 7 50 50 H 1.09000 * 110.40811 * 338.35331 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0633 -0.8858 6 6 5.5945 1.7982 -0.5074 7 6 6.8108 2.2765 -1.1914 8 8 6.7163 2.9719 -2.1843 9 7 8.0268 1.9435 -0.7151 10 6 8.3423 1.1136 0.4708 11 6 9.5507 0.2565 0.0364 12 1 10.2453 0.1321 0.8672 13 6 9.0822 -1.1081 -0.4729 14 6 10.2160 1.0550 -1.1038 15 1 10.2090 0.4751 -2.0268 16 6 11.6496 1.4309 -0.7239 17 6 12.3306 2.1114 -1.9130 18 7 13.7035 2.4707 -1.5494 19 6 14.5123 3.0948 -2.4613 20 1 14.1383 3.3217 -3.4487 21 6 15.8134 3.4348 -2.1169 22 7 16.5907 4.0351 -2.9932 23 14 16.4606 3.0417 -0.4092 24 1 17.0786 1.6914 -0.4128 25 1 17.4786 4.0509 -0.0213 26 1 15.3394 3.0704 0.5639 27 6 9.3513 2.3243 -1.2587 28 7 5.5636 1.0229 0.5901 29 7 4.3405 0.7966 0.9228 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 3.9967 2.6564 -1.7326 38 1 7.4956 0.4758 0.7246 39 1 8.6098 1.7462 1.3172 40 1 9.9380 -1.6694 -0.8477 41 1 8.6151 -1.6595 0.3430 42 1 8.3597 -0.9673 -1.2768 43 1 12.2022 0.5306 -0.4550 44 1 11.6331 2.1142 0.1252 45 1 12.3471 1.4280 -2.7621 46 1 11.7781 3.0116 -2.1818 47 1 14.0397 2.2666 -0.6626 48 1 17.4999 4.2723 -2.7527 49 1 9.7765 3.1463 -0.6827 50 1 9.2658 2.5999 -2.3098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104850170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:07 Heat of formation + Delta-G solvation = 69.103768 kcal Electronic energy + Delta-G solvation = -28529.060282 eV Core-core repulsion = 24593.728958 eV Total energy + Delta-G solvation = -3935.331324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57834 -40.03760 -38.03635 -36.54032 -35.25891 -33.37660 -32.90880 -31.97275 -31.27894 -30.43627 -27.98037 -27.04971 -26.59427 -24.72913 -23.50807 -22.88899 -22.21256 -21.86945 -20.78717 -19.85640 -19.82272 -17.91015 -17.50154 -16.71954 -16.59969 -16.06656 -15.71301 -15.47061 -15.07300 -14.82225 -14.50747 -14.32089 -13.98445 -13.86408 -13.52490 -13.28108 -13.23673 -13.18003 -12.86008 -12.72305 -12.61212 -12.38526 -12.27542 -12.05440 -11.86194 -11.58975 -11.48521 -11.31626 -11.19036 -11.07546 -10.84030 -10.75372 -10.51048 -10.42305 -10.19892 -10.17547 -9.99574 -9.64650 -9.53218 -8.83739 -8.73873 -7.16917 -5.71398 -3.06491 0.76463 1.42666 1.58315 2.80228 3.11505 3.41457 3.44121 3.48998 3.71495 3.84586 4.04192 4.23081 4.37827 4.51624 4.55431 4.56776 4.64064 4.65115 4.70338 4.81587 4.86008 4.99250 5.12288 5.25082 5.28920 5.30184 5.38083 5.45719 5.47506 5.50087 5.57323 5.63706 5.70999 5.74880 5.85514 5.89945 5.93384 6.01064 6.03199 6.09165 6.16798 6.23444 6.27732 6.48386 6.81134 6.84612 7.41865 7.57320 8.01249 8.05957 8.47838 9.27493 9.99865 10.19934 11.47190 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.001908 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.818406 B =14673.848857 C =15117.781799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.120 3.880 4 N -0.360 5.360 5 C 0.093 3.907 6 C -0.093 4.093 7 C 0.621 3.379 8 O -0.541 6.541 9 N -0.606 5.606 10 C 0.095 3.905 11 C -0.104 4.104 12 H 0.088 0.912 13 C -0.140 4.140 14 C -0.092 4.092 15 H 0.084 0.916 16 C -0.120 4.120 17 C 0.155 3.845 18 N -0.758 5.758 19 C -0.243 4.243 20 H 0.090 0.910 21 C 0.002 3.998 22 N -0.936 5.936 23 Si 0.886 3.114 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.277 1.277 27 C 0.110 3.890 28 N -0.203 5.203 29 N -0.066 5.066 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.106 0.894 37 H 0.205 0.795 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.052 0.948 43 H 0.067 0.933 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.027 0.973 47 H 0.360 0.640 48 H 0.259 0.741 49 H 0.079 0.921 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.284 -9.744 8.987 37.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.176 4.176 3 C -0.001 4.001 4 N -0.145 5.145 5 C -0.064 4.064 6 C -0.233 4.233 7 C 0.407 3.593 8 O -0.418 6.418 9 N -0.338 5.338 10 C -0.028 4.028 11 C -0.124 4.124 12 H 0.107 0.893 13 C -0.197 4.197 14 C -0.112 4.112 15 H 0.103 0.897 16 C -0.158 4.158 17 C 0.028 3.972 18 N -0.403 5.403 19 C -0.373 4.373 20 H 0.108 0.892 21 C -0.193 4.193 22 N -0.584 5.584 23 Si 0.716 3.284 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.011 4.011 28 N -0.076 5.076 29 N -0.046 5.046 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.222 0.778 38 H 0.125 0.875 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.044 0.956 46 H 0.045 0.955 47 H 0.193 0.807 48 H 0.069 0.931 49 H 0.097 0.903 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -35.365 -10.098 9.449 37.973 hybrid contribution 0.456 0.458 0.338 0.729 sum -34.909 -9.641 9.788 37.515 Atomic orbital electron populations 1.21708 0.93754 1.02969 1.02391 1.21836 0.97043 0.94471 1.04282 1.22188 0.72413 1.00197 1.05264 1.50555 1.08859 1.35161 1.19951 1.23385 0.90069 0.97012 0.95960 1.21407 0.94364 1.08197 0.99287 1.16275 0.80479 0.79740 0.82756 1.90830 1.85968 1.39194 1.25779 1.48687 1.04894 1.50826 1.29358 1.22840 0.98914 0.93689 0.87326 1.22205 0.96556 0.95070 0.98534 0.89347 1.21808 1.01166 0.95793 1.00944 1.22156 0.94581 0.95557 0.98939 0.89735 1.21863 0.93419 1.00981 0.99572 1.20676 0.85563 0.96510 0.94495 1.42722 1.10360 1.73074 1.14141 1.19091 0.92981 1.29915 0.95265 0.89242 1.24682 0.96454 1.00732 0.97453 1.69710 1.07995 1.46579 1.34099 0.86522 0.78498 0.77782 0.85587 1.21135 1.21792 1.20329 1.22570 0.80396 0.97250 1.00918 1.74617 1.12472 1.10216 1.10345 1.81978 0.93507 1.17328 1.11752 0.92045 0.92176 0.91564 0.90989 0.89988 0.88252 0.87609 0.77844 0.87522 0.91124 0.92251 0.92624 0.92924 0.91453 0.91683 0.95566 0.95486 0.80739 0.93134 0.90282 0.89513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.25 9.91 37.16 0.37 0.12 16 2 C -0.14 -0.44 6.14 -26.73 -0.16 -0.60 16 3 C 0.12 0.36 6.54 -4.05 -0.03 0.34 16 4 N -0.36 -2.58 3.69 -61.06 -0.23 -2.81 16 5 C 0.09 0.75 11.27 -16.84 -0.19 0.56 16 6 C -0.09 -1.06 6.87 -83.55 -0.57 -1.63 16 7 C 0.62 8.52 7.91 -12.48 -0.10 8.42 16 8 O -0.54 -8.79 17.13 5.29 0.09 -8.70 16 9 N -0.61 -7.83 3.32 -170.55 -0.57 -8.40 16 10 C 0.10 1.05 6.22 -2.41 -0.02 1.03 16 11 C -0.10 -1.10 3.30 -89.22 -0.29 -1.40 16 12 H 0.09 0.87 7.71 -51.93 -0.40 0.47 16 13 C -0.14 -1.37 8.91 37.16 0.33 -1.04 16 14 C -0.09 -1.15 2.71 -89.23 -0.24 -1.39 16 15 H 0.08 1.08 7.71 -51.93 -0.40 0.68 16 16 C -0.12 -1.76 4.51 -26.73 -0.12 -1.88 16 17 C 0.15 3.00 6.13 -4.04 -0.02 2.97 16 18 N -0.76 -18.42 5.41 -59.91 -0.32 -18.74 16 19 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 20 H 0.09 2.79 8.06 -52.48 -0.42 2.37 16 21 C 0.00 0.07 5.50 -17.43 -0.10 -0.03 16 22 N -0.94 -29.98 13.97 55.49 0.78 -29.21 16 23 Si 0.89 22.49 27.74 -169.99 -4.71 17.77 16 24 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 26 H -0.28 -6.60 6.52 56.52 0.37 -6.23 16 27 C 0.11 1.48 5.87 -2.42 -0.01 1.46 16 28 N -0.20 -2.34 9.36 32.85 0.31 -2.03 16 29 N -0.07 -0.67 13.65 60.35 0.82 0.15 16 30 H 0.06 0.08 8.14 -51.93 -0.42 -0.35 16 31 H 0.06 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.07 0.12 8.14 -51.92 -0.42 -0.30 16 33 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.11 0.06 8.08 -51.93 -0.42 -0.36 16 37 H 0.20 1.05 8.06 -52.48 -0.42 0.62 16 38 H 0.11 1.17 5.16 -51.93 -0.27 0.91 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.06 0.94 7.98 -51.93 -0.41 0.53 16 45 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.03 0.54 7.59 -51.93 -0.39 0.14 16 47 H 0.36 8.47 5.53 -40.82 -0.23 8.25 16 48 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 49 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 50 H 0.09 1.26 7.88 -51.93 -0.41 0.85 16 LS Contribution 404.79 15.07 6.10 6.10 Total: -1.00 -36.18 404.79 -7.47 -43.65 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -8.42 Total: 2.49 kcal Atomic # 6 Polarization: 1.03 SS G_CDS: -1.32 Total: -0.29 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 0.79 Total: -61.03 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.70 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.71 Total: 17.77 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -36.18 -7.47 -43.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104850170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.759 kcal (2) G-P(sol) polarization free energy of solvation -36.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds