Wall clock time and date at job start Tue Mar 31 2020 19:01:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47218 * 2 1 4 4 N 1.46494 * 109.47530 * 179.97438 * 3 2 1 5 5 C 1.34813 * 126.59623 * 124.99990 * 4 3 2 6 6 C 1.36596 * 106.84423 * 180.02562 * 5 4 3 7 7 C 1.47518 * 125.77095 * 179.97438 * 6 5 4 8 8 O 1.21588 * 120.00381 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99515 * 179.97438 * 7 6 5 10 10 C 1.48142 * 127.84184 * 0.02842 * 9 7 6 11 11 C 1.54388 * 104.62164 * 140.43167 * 10 9 7 12 12 H 1.09001 * 110.34478 * 142.73153 * 11 10 9 13 13 C 1.52999 * 110.43354 * 264.95067 * 11 10 9 14 14 C 1.54287 * 104.95908 * 23.86856 * 11 10 9 15 15 H 1.09005 * 110.34229 * 241.02745 * 14 11 10 16 16 C 1.52997 * 110.34642 * 118.87116 * 14 11 10 17 17 C 1.53000 * 109.47060 * 175.00176 * 16 14 11 18 18 N 1.46499 * 109.46840 * 180.02562 * 17 16 14 19 19 C 1.36936 * 120.00002 * 179.97438 * 18 17 16 20 20 H 1.08004 * 120.00140 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00175 * 180.02562 * 19 18 17 22 22 N 1.31624 * 120.00147 * 180.02562 * 21 19 18 23 23 Si 1.86804 * 119.99891 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47166 * 90.00248 * 23 21 19 25 25 H 1.48501 * 109.46982 * 210.00125 * 23 21 19 26 26 H 1.48494 * 109.47221 * 330.00034 * 23 21 19 27 27 C 1.48150 * 127.83594 * 180.02562 * 9 7 6 28 28 N 1.34403 * 108.45594 * 0.24158 * 6 5 4 29 29 N 1.28766 * 109.52086 * 359.58990 * 28 6 5 30 30 H 1.08997 * 109.47146 * 299.99568 * 1 2 3 31 31 H 1.09001 * 109.47252 * 59.99650 * 1 2 3 32 32 H 1.09008 * 109.46831 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46895 * 240.00516 * 2 1 3 34 34 H 1.09001 * 109.47252 * 120.00350 * 2 1 3 35 35 H 1.09005 * 109.46766 * 60.00437 * 3 2 1 36 36 H 1.09001 * 109.47294 * 300.00324 * 3 2 1 37 37 H 1.08004 * 126.57949 * 0.02562 * 5 4 3 38 38 H 1.09000 * 110.40764 * 21.64574 * 10 9 7 39 39 H 1.09001 * 110.40859 * 259.21667 * 10 9 7 40 40 H 1.08994 * 109.47185 * 175.58622 * 13 11 10 41 41 H 1.08994 * 109.46794 * 295.58749 * 13 11 10 42 42 H 1.09003 * 109.46759 * 55.58755 * 13 11 10 43 43 H 1.09002 * 109.47153 * 54.99857 * 16 14 11 44 44 H 1.09001 * 109.46832 * 295.00047 * 16 14 11 45 45 H 1.09001 * 109.47194 * 299.99650 * 17 16 14 46 46 H 1.08992 * 109.47399 * 59.99823 * 17 16 14 47 47 H 0.97005 * 120.00448 * 359.97438 * 18 17 16 48 48 H 0.96996 * 119.99724 * 180.02562 * 22 21 19 49 49 H 1.09006 * 110.40392 * 100.78195 * 27 9 7 50 50 H 1.09000 * 110.40811 * 338.35331 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.3090 2.0633 -0.8858 6 6 5.5945 1.7982 -0.5074 7 6 6.8108 2.2765 -1.1914 8 8 6.7163 2.9719 -2.1843 9 7 8.0268 1.9435 -0.7151 10 6 8.3423 1.1136 0.4708 11 6 9.5507 0.2565 0.0364 12 1 10.2453 0.1321 0.8672 13 6 9.0822 -1.1081 -0.4729 14 6 10.2160 1.0550 -1.1038 15 1 10.2090 0.4751 -2.0268 16 6 11.6496 1.4309 -0.7239 17 6 12.3306 2.1114 -1.9130 18 7 13.7035 2.4707 -1.5494 19 6 14.5123 3.0948 -2.4613 20 1 14.1383 3.3217 -3.4487 21 6 15.8134 3.4348 -2.1169 22 7 16.5907 4.0351 -2.9932 23 14 16.4606 3.0417 -0.4092 24 1 17.0786 1.6914 -0.4128 25 1 17.4786 4.0509 -0.0213 26 1 15.3394 3.0704 0.5639 27 6 9.3513 2.3243 -1.2587 28 7 5.5636 1.0229 0.5901 29 7 4.3405 0.7966 0.9228 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0278 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9564 -0.8900 37 1 3.9967 2.6564 -1.7326 38 1 7.4956 0.4758 0.7246 39 1 8.6098 1.7462 1.3172 40 1 9.9380 -1.6694 -0.8477 41 1 8.6151 -1.6595 0.3430 42 1 8.3597 -0.9673 -1.2768 43 1 12.2022 0.5306 -0.4550 44 1 11.6331 2.1142 0.1252 45 1 12.3471 1.4280 -2.7621 46 1 11.7781 3.0116 -2.1818 47 1 14.0397 2.2666 -0.6626 48 1 17.4999 4.2723 -2.7527 49 1 9.7765 3.1463 -0.6827 50 1 9.2658 2.5999 -2.3098 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104850170.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:06 Heat of formation + Delta-G solvation = 44.670550 kcal Electronic energy + Delta-G solvation = -28530.119786 eV Core-core repulsion = 24593.728958 eV Total energy + Delta-G solvation = -3936.390828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.28181 -41.03853 -39.11001 -37.03384 -36.90579 -34.58646 -33.66785 -33.40444 -32.25516 -31.82171 -28.95621 -27.83439 -27.46762 -26.09829 -24.42407 -23.78725 -23.43785 -22.49030 -22.07928 -20.85263 -20.64776 -19.62232 -18.66620 -17.44544 -17.32885 -16.95835 -16.65504 -16.46987 -16.12513 -15.81011 -15.78408 -15.63980 -15.12152 -14.76228 -14.50080 -14.44401 -14.34398 -14.24211 -13.76215 -13.64748 -13.45924 -13.28871 -13.04204 -12.97236 -12.92410 -12.75894 -12.44473 -12.40969 -12.23569 -12.11457 -12.02856 -11.82478 -11.75308 -11.57360 -11.51866 -11.30205 -11.25003 -11.17720 -10.94487 -10.41617 -9.74702 -9.28329 -8.01723 -5.35696 0.11556 0.56968 1.06794 1.39496 1.44143 1.51593 1.86248 2.16441 2.50407 3.06196 3.29283 3.29554 3.47880 3.61987 3.67299 3.80572 3.82216 3.92698 3.98543 4.14569 4.18403 4.25848 4.31547 4.41392 4.44919 4.47534 4.52700 4.59538 4.64776 4.65596 4.77546 4.82444 4.84207 4.92318 4.95721 5.08682 5.11154 5.15097 5.17234 5.22831 5.28509 5.31743 5.37030 5.40502 5.47962 5.56255 5.76669 6.22322 6.44015 6.77718 7.04257 7.09533 7.85451 8.06117 9.19989 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.030106 B = 0.001908 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.818406 B =14673.848857 C =15117.781799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.134 4.134 3 C 0.110 3.890 4 N -0.347 5.347 5 C 0.110 3.890 6 C -0.121 4.121 7 C 0.617 3.383 8 O -0.577 6.577 9 N -0.608 5.608 10 C 0.097 3.903 11 C -0.096 4.096 12 H 0.106 0.894 13 C -0.136 4.136 14 C -0.083 4.083 15 H 0.081 0.919 16 C -0.105 4.105 17 C 0.150 3.850 18 N -0.759 5.759 19 C -0.240 4.240 20 H 0.051 0.949 21 C -0.067 4.067 22 N -0.986 5.986 23 Si 0.961 3.039 24 H -0.276 1.276 25 H -0.296 1.296 26 H -0.248 1.248 27 C 0.109 3.891 28 N -0.217 5.217 29 N -0.084 5.084 30 H 0.067 0.933 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.234 0.766 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.039 0.961 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.368 0.632 48 H 0.258 0.742 49 H 0.077 0.923 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -37.352 -10.885 11.379 40.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.131 5.131 5 C -0.049 4.049 6 C -0.261 4.261 7 C 0.405 3.595 8 O -0.456 6.456 9 N -0.339 5.339 10 C -0.025 4.025 11 C -0.115 4.115 12 H 0.124 0.876 13 C -0.193 4.193 14 C -0.103 4.103 15 H 0.099 0.901 16 C -0.143 4.143 17 C 0.024 3.976 18 N -0.405 5.405 19 C -0.371 4.371 20 H 0.069 0.931 21 C -0.258 4.258 22 N -0.636 5.636 23 Si 0.788 3.212 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.172 1.172 27 C -0.014 4.014 28 N -0.091 5.091 29 N -0.065 5.065 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.133 0.867 36 H 0.157 0.843 37 H 0.250 0.750 38 H 0.127 0.873 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.092 0.908 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.201 0.799 48 H 0.067 0.933 49 H 0.095 0.905 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -37.505 -11.288 11.887 40.931 hybrid contribution 0.941 0.832 -0.522 1.360 sum -36.564 -10.456 11.365 39.691 Atomic orbital electron populations 1.21682 0.92370 1.03063 1.03289 1.21777 0.98108 0.94322 1.03004 1.22663 0.69896 1.00579 1.07680 1.50832 1.10080 1.33589 1.18612 1.23807 0.89078 0.95936 0.96041 1.21268 0.94547 1.10001 1.00256 1.16634 0.81260 0.79200 0.82433 1.90795 1.86585 1.40902 1.27360 1.48781 1.04560 1.50798 1.29789 1.22937 0.99168 0.93620 0.86757 1.22190 0.96369 0.94910 0.98065 0.87599 1.21773 1.01073 0.95467 1.00993 1.22029 0.93224 0.95279 0.99749 0.90103 1.21723 0.94040 1.01078 0.97418 1.20855 0.83586 0.96480 0.96669 1.42712 1.11592 1.72577 1.13594 1.19063 0.93753 1.29533 0.94735 0.93074 1.25598 0.96727 1.01059 1.02421 1.69908 1.08414 1.48450 1.36853 0.85317 0.78277 0.77466 0.80173 1.20179 1.22282 1.17186 1.22505 0.81256 0.97795 0.99816 1.74566 1.13298 1.10606 1.10602 1.81897 0.93544 1.18201 1.12832 0.91391 0.91009 0.91932 0.91879 0.91709 0.86746 0.84309 0.74952 0.87309 0.90358 0.91823 0.91296 0.94209 0.90167 0.90803 0.96172 0.96204 0.79876 0.93330 0.90487 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.18 9.91 71.98 0.71 0.53 16 2 C -0.13 -0.62 6.14 30.59 0.19 -0.43 16 3 C 0.11 0.37 6.54 86.38 0.56 0.93 16 4 N -0.35 -4.30 3.69 -347.10 -1.28 -5.58 16 5 C 0.11 1.59 11.27 83.85 0.95 2.53 16 6 C -0.12 -2.67 6.87 40.81 0.28 -2.39 16 7 C 0.62 17.00 7.91 86.69 0.69 17.68 16 8 O -0.58 -19.11 17.13 -3.99 -0.07 -19.18 16 9 N -0.61 -15.59 3.32 -811.76 -2.69 -18.28 16 10 C 0.10 2.00 6.22 86.53 0.54 2.54 16 11 C -0.10 -1.82 3.30 -9.89 -0.03 -1.85 16 12 H 0.11 1.70 7.71 -2.39 -0.02 1.69 16 13 C -0.14 -2.40 8.91 71.98 0.64 -1.76 16 14 C -0.08 -1.96 2.71 -9.90 -0.03 -1.99 16 15 H 0.08 2.00 7.71 -2.38 -0.02 1.98 16 16 C -0.10 -2.85 4.51 30.59 0.14 -2.71 16 17 C 0.15 5.77 6.13 86.38 0.53 6.30 16 18 N -0.76 -36.27 5.41 -343.46 -1.86 -38.13 16 19 C -0.24 -14.21 10.47 84.03 0.88 -13.33 16 20 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 21 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 22 N -0.99 -64.72 13.97 21.65 0.30 -64.42 16 23 Si 0.96 45.94 27.74 68.60 1.90 47.85 16 24 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 26 H -0.25 -10.52 6.52 99.48 0.65 -9.87 16 27 C 0.11 2.91 5.87 86.52 0.51 3.42 16 28 N -0.22 -4.84 9.36 -50.00 -0.47 -5.31 16 29 N -0.08 -1.64 13.65 37.02 0.51 -1.14 16 30 H 0.07 0.01 8.14 -2.39 -0.02 -0.01 16 31 H 0.07 -0.06 8.14 -2.39 -0.02 -0.08 16 32 H 0.06 0.14 8.14 -2.38 -0.02 0.12 16 33 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 34 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.11 0.12 8.14 -2.38 -0.02 0.10 16 36 H 0.14 -0.39 8.08 -2.39 -0.02 -0.41 16 37 H 0.23 1.80 8.06 -2.91 -0.02 1.77 16 38 H 0.11 2.26 5.16 -2.39 -0.01 2.25 16 39 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 45 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.02 0.80 7.59 -2.39 -0.02 0.78 16 47 H 0.37 16.37 5.53 -92.70 -0.51 15.86 16 48 H 0.26 16.06 8.31 -92.71 -0.77 15.28 16 49 H 0.08 2.08 7.75 -2.38 -0.02 2.06 16 50 H 0.07 2.05 7.88 -2.39 -0.02 2.03 16 Total: -1.00 -80.81 404.79 3.72 -77.09 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.36 Total: 21.19 kcal Atomic # 6 Polarization: -1.12 SS G_CDS: 7.02 Total: 5.90 kcal Atomic # 7 Polarization: -127.36 SS G_CDS: -5.49 Total: -132.85 kcal Atomic # 8 Polarization: -19.11 SS G_CDS: -0.07 Total: -19.18 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.85 kcal Total: -80.81 3.72 -77.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104850170.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.758 kcal (2) G-P(sol) polarization free energy of solvation -80.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds