Wall clock time and date at job start Tue Mar 31 2020 18:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47028 * 2 1 4 4 H 1.08999 * 109.47237 * 54.99785 * 3 2 1 5 5 C 1.52998 * 109.46784 * 295.00334 * 3 2 1 6 6 C 1.52998 * 109.47080 * 174.99873 * 3 2 1 7 7 H 1.09004 * 109.46816 * 60.00195 * 6 3 2 8 8 C 1.53002 * 109.47186 * 300.00037 * 6 3 2 9 9 C 1.50705 * 109.47186 * 179.97438 * 6 3 2 10 10 O 1.21286 * 119.99393 * 36.36590 * 9 6 3 11 11 N 1.34767 * 120.00052 * 216.37468 * 9 6 3 12 12 C 1.47583 * 134.49213 * 355.02634 * 11 9 6 13 13 C 1.53950 * 86.11501 * 155.37022 * 12 11 9 14 14 N 1.46494 * 113.74260 * 137.95551 * 13 12 11 15 15 C 1.35312 * 125.87101 * 275.32016 * 14 13 12 16 16 C 1.35345 * 106.18043 * 180.11682 * 15 14 13 17 17 C 1.50700 * 126.75363 * 179.85432 * 16 15 14 18 18 N 1.46501 * 109.47260 * 94.71936 * 17 16 15 19 19 C 1.36937 * 120.00227 * 179.72639 * 18 17 16 20 20 H 1.08000 * 119.99447 * 0.26811 * 19 18 17 21 21 C 1.38808 * 120.00325 * 180.27067 * 19 18 17 22 22 N 1.31614 * 120.00220 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 119.99819 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.47361 * 89.99747 * 23 21 19 25 25 H 1.48501 * 109.47417 * 210.00041 * 23 21 19 26 26 H 1.48499 * 109.47133 * 330.00131 * 23 21 19 27 27 N 1.33776 * 106.49580 * 359.59298 * 16 15 14 28 28 N 1.28638 * 108.88397 * 0.26376 * 27 16 15 29 29 C 1.47579 * 134.49221 * 175.04220 * 11 9 6 30 30 H 1.09006 * 109.47242 * 299.99611 * 1 2 3 31 31 H 1.08992 * 109.47290 * 59.99920 * 1 2 3 32 32 H 1.08996 * 109.46710 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47220 * 240.00090 * 2 1 3 34 34 H 1.09000 * 109.46866 * 119.99641 * 2 1 3 35 35 H 1.08996 * 109.47023 * 299.99269 * 5 3 2 36 36 H 1.08989 * 109.47579 * 60.00108 * 5 3 2 37 37 H 1.09005 * 109.46726 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.46597 * 186.23296 * 8 6 3 39 39 H 1.09001 * 109.46595 * 306.22946 * 8 6 3 40 40 H 1.08996 * 109.47294 * 66.23483 * 8 6 3 41 41 H 1.08998 * 113.77026 * 41.06830 * 12 11 9 42 42 H 1.09000 * 113.87222 * 269.67692 * 12 11 9 43 43 H 1.09000 * 113.73568 * 269.15604 * 13 12 11 44 44 H 1.07998 * 126.91090 * 359.97438 * 15 14 13 45 45 H 1.08993 * 109.47232 * 334.71218 * 17 16 15 46 46 H 1.09007 * 109.47007 * 214.71365 * 17 16 15 47 47 H 0.96996 * 119.99888 * 359.97438 * 18 17 16 48 48 H 0.96999 * 120.00293 * 179.97438 * 22 21 19 49 49 H 1.09001 * 113.77435 * 90.32954 * 29 11 9 50 50 H 1.08996 * 113.76863 * 318.92770 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5648 1.4444 0.1258 7 1 3.9994 0.9054 -0.7161 8 6 3.9696 0.7604 1.4331 9 6 4.0672 2.8652 0.1251 10 8 3.4237 3.7361 0.6715 11 7 5.2313 3.1681 -0.4826 12 6 6.2888 2.3790 -1.1437 13 6 6.6152 3.6652 -1.9242 14 7 8.0506 3.9223 -2.0636 15 6 8.8365 4.5450 -1.1550 16 6 10.0809 4.5699 -1.6868 17 6 11.3175 5.1613 -1.0605 18 7 12.0570 4.1119 -0.3547 19 6 13.2260 4.4143 0.2912 20 1 13.6005 5.4272 0.2839 21 6 13.9297 3.4189 0.9553 22 7 15.0535 3.7094 1.5756 23 14 13.2815 1.6670 0.9684 24 1 13.8268 0.9286 -0.1989 25 1 13.7037 0.9924 2.2221 26 1 11.7985 1.6873 0.8925 27 7 9.9984 3.9612 -2.8751 28 7 8.7823 3.5893 -3.0689 29 6 5.9607 4.4220 -0.7541 30 1 -0.3634 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3632 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0698 1.5876 -2.1491 36 1 0.5489 2.1252 -1.3969 37 1 1.9988 3.1541 -1.3075 38 1 5.0456 0.8590 1.5767 39 1 3.4472 1.2309 2.2661 40 1 3.7043 -0.2959 1.3878 41 1 5.9084 1.5707 -1.7682 42 1 7.0853 2.0587 -0.4720 43 1 6.0737 3.7564 -2.8657 44 1 8.5317 4.9441 -0.1989 45 1 11.0302 5.9407 -0.3549 46 1 11.9491 5.5903 -1.8385 47 1 11.7205 3.2023 -0.3479 48 1 15.5450 3.0140 2.0400 49 1 6.6600 4.7029 0.0334 50 1 5.3183 5.2448 -1.0677 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001105354349.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:38 Heat of formation + Delta-G solvation = 106.679531 kcal Electronic energy + Delta-G solvation = -28801.268711 eV Core-core repulsion = 24867.566794 eV Total energy + Delta-G solvation = -3933.701917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.29252 -41.04120 -39.06217 -36.99054 -35.23911 -33.69253 -32.62419 -31.93443 -30.40110 -29.85028 -29.46077 -27.21871 -26.21144 -25.02670 -24.84580 -23.40999 -22.47141 -21.26740 -20.83647 -20.36187 -19.34825 -18.23448 -17.79899 -17.34666 -16.77317 -15.98607 -15.82129 -15.34963 -15.00119 -14.63974 -14.52562 -14.51720 -14.19067 -13.98255 -13.79970 -13.57565 -13.43423 -13.16098 -12.96107 -12.80326 -12.71669 -12.42138 -12.32658 -12.25724 -12.15102 -11.93700 -11.73155 -11.62170 -11.21769 -11.14638 -11.03846 -10.94049 -10.90116 -10.65813 -10.21707 -10.17266 -9.99633 -9.60877 -9.40148 -9.09426 -8.91971 -7.25521 -5.77214 -3.13199 1.54808 1.78021 2.06533 2.50691 2.68350 3.32218 3.36854 3.42113 3.45585 3.65638 3.99939 4.12112 4.16504 4.33979 4.48014 4.50988 4.59430 4.64822 4.70202 4.74526 4.81207 4.87789 4.91199 5.03741 5.05805 5.09181 5.11781 5.16187 5.19778 5.31232 5.31955 5.32475 5.51406 5.51686 5.53698 5.57512 5.63069 5.65941 5.70016 5.71648 5.92352 5.94160 6.19123 6.51915 6.52525 6.63411 6.99119 7.61577 7.97012 8.41267 8.61311 9.19113 9.91540 10.11296 11.40851 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015588 B = 0.002331 C = 0.002156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.779068 B =12011.448138 C =12985.361724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.077 4.077 4 H 0.084 0.916 5 C -0.152 4.152 6 C -0.099 4.099 7 H 0.089 0.911 8 C -0.144 4.144 9 C 0.552 3.448 10 O -0.528 6.528 11 N -0.645 5.645 12 C 0.098 3.902 13 C 0.113 3.887 14 N -0.295 5.295 15 C -0.044 4.044 16 C -0.007 4.007 17 C 0.237 3.763 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.094 0.906 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.885 3.115 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.280 1.280 27 N -0.251 5.251 28 N -0.090 5.090 29 C 0.104 3.896 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.102 0.898 42 H 0.100 0.900 43 H 0.146 0.854 44 H 0.190 0.810 45 H 0.047 0.953 46 H 0.049 0.951 47 H 0.362 0.638 48 H 0.260 0.740 49 H 0.101 0.899 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.472 -5.618 -5.002 32.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.096 4.096 4 H 0.102 0.898 5 C -0.210 4.210 6 C -0.121 4.121 7 H 0.108 0.892 8 C -0.201 4.201 9 C 0.342 3.658 10 O -0.403 6.403 11 N -0.382 5.382 12 C -0.026 4.026 13 C 0.009 3.991 14 N -0.090 5.090 15 C -0.194 4.194 16 C -0.144 4.144 17 C 0.108 3.892 18 N -0.395 5.395 19 C -0.373 4.373 20 H 0.111 0.889 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.715 3.285 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.207 1.207 27 N -0.118 5.118 28 N -0.068 5.068 29 C -0.019 4.019 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.164 0.836 44 H 0.207 0.793 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.195 0.805 48 H 0.070 0.930 49 H 0.119 0.881 50 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -31.821 -5.734 -5.895 32.867 hybrid contribution -0.364 -0.867 1.126 1.468 sum -32.185 -6.601 -4.769 33.200 Atomic orbital electron populations 1.21813 0.95576 1.01641 1.02088 1.21639 0.96230 0.95653 1.02330 1.21085 0.91926 0.96854 0.99694 0.89794 1.21928 1.01900 1.00615 0.96512 1.21351 0.97648 0.92108 1.00968 0.89244 1.21789 1.01846 1.00980 0.95509 1.20402 0.78412 0.91135 0.75827 1.90731 1.56450 1.50043 1.43100 1.49750 1.19524 1.09949 1.59003 1.23689 0.89548 0.95318 0.94089 1.23716 0.76214 0.97725 1.01469 1.47144 1.09128 1.39059 1.13626 1.23392 0.91592 1.05561 0.98855 1.22548 0.96298 1.02720 0.92872 1.18937 0.85696 0.90791 0.93781 1.42642 1.26705 1.06517 1.63679 1.19036 0.96615 0.96883 1.24806 0.88859 1.24636 0.96837 0.97460 0.99986 1.69693 1.16416 1.32666 1.39211 0.86545 0.78154 0.86528 0.77240 1.20949 1.21737 1.20670 1.75140 1.08584 1.11966 1.16132 1.78308 0.97825 1.20093 1.10580 1.23546 0.93951 0.89962 0.94463 0.92644 0.92444 0.92716 0.91864 0.91407 0.92784 0.91948 0.92523 0.92185 0.91520 0.90763 0.87950 0.88151 0.83632 0.79275 0.93526 0.93332 0.80532 0.93013 0.88073 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.39 16 2 C -0.12 -0.61 5.19 -26.73 -0.14 -0.75 16 3 C -0.08 -0.50 1.67 -90.62 -0.15 -0.65 16 4 H 0.08 0.69 7.86 -51.93 -0.41 0.28 16 5 C -0.15 -0.99 8.69 37.16 0.32 -0.67 16 6 C -0.10 -0.66 2.18 -91.77 -0.20 -0.86 16 7 H 0.09 0.46 7.45 -51.93 -0.39 0.08 16 8 C -0.14 -0.90 8.64 37.16 0.32 -0.58 16 9 C 0.55 5.13 5.97 -10.99 -0.07 5.06 16 10 O -0.53 -6.83 16.56 5.55 0.09 -6.74 16 11 N -0.64 -4.96 3.61 -178.53 -0.64 -5.61 16 12 C 0.10 0.63 8.21 -2.97 -0.02 0.61 16 13 C 0.11 0.82 5.15 -70.14 -0.36 0.45 16 14 N -0.29 -3.44 3.54 -56.30 -0.20 -3.63 16 15 C -0.04 -0.57 10.72 -17.05 -0.18 -0.75 16 16 C -0.01 -0.12 6.61 -82.78 -0.55 -0.66 16 17 C 0.24 4.59 6.82 -5.19 -0.04 4.55 16 18 N -0.75 -17.98 5.40 -61.09 -0.33 -18.31 16 19 C -0.24 -6.87 10.47 -15.06 -0.16 -7.03 16 20 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 21 C 0.01 0.20 5.50 -17.43 -0.10 0.10 16 22 N -0.93 -29.19 13.97 55.49 0.78 -28.42 16 23 Si 0.88 22.38 27.73 -169.99 -4.71 17.67 16 24 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 27 N -0.25 -4.58 12.41 33.29 0.41 -4.17 16 28 N -0.09 -1.38 13.17 60.35 0.79 -0.58 16 29 C 0.10 0.73 8.20 -2.98 -0.02 0.70 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.27 6.56 -51.93 -0.34 -0.07 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.32 6.31 -51.93 -0.33 -0.01 16 35 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.37 6.56 -51.94 -0.34 0.03 16 37 H 0.06 0.47 6.87 -51.93 -0.36 0.11 16 38 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.35 6.67 -51.93 -0.35 0.01 16 41 H 0.10 0.45 7.79 -51.93 -0.40 0.05 16 42 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.15 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.19 1.84 6.72 -52.49 -0.35 1.49 16 45 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 47 H 0.36 8.73 5.52 -40.82 -0.23 8.51 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.10 0.69 6.31 -51.93 -0.33 0.36 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -35.97 401.35 -6.81 -42.77 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -8.06 Total: 1.81 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -0.98 Total: -0.86 kcal Atomic # 7 Polarization: -61.52 SS G_CDS: 0.81 Total: -60.71 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: 0.09 Total: -6.74 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -4.71 Total: 17.67 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.97 -6.81 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105354349.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.454 kcal (2) G-P(sol) polarization free energy of solvation -35.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds