Wall clock time and date at job start Tue Mar 31 2020 18:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47139 * 305.00254 * 3 2 1 5 5 C 1.53003 * 109.46970 * 65.00226 * 3 2 1 6 6 C 1.52993 * 109.47066 * 184.99835 * 3 2 1 7 7 C 1.53007 * 109.47057 * 175.00167 * 6 3 2 8 8 C 1.50706 * 109.46908 * 180.02562 * 7 6 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47037 * 60.00258 * 22 20 18 24 24 H 1.48505 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46970 * 299.99868 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09008 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47532 * 299.99428 * 1 2 3 31 31 H 1.09006 * 109.47683 * 59.99864 * 1 2 3 32 32 H 1.09003 * 109.46831 * 240.00313 * 2 1 3 33 33 H 1.08994 * 109.47145 * 120.00585 * 2 1 3 34 34 H 1.08996 * 109.47407 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47177 * 300.00300 * 5 3 2 36 36 H 1.09002 * 109.46865 * 59.99596 * 5 3 2 37 37 H 1.08998 * 109.47296 * 55.00706 * 6 3 2 38 38 H 1.09000 * 109.47603 * 295.00468 * 6 3 2 39 39 H 1.08998 * 109.47160 * 60.00680 * 7 6 3 40 40 H 1.08996 * 109.47236 * 300.00068 * 7 6 3 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4443 -0.1257 7 6 4.0644 2.8850 -0.2510 8 6 5.5663 2.8868 -0.3755 9 8 6.1768 1.8390 -0.3654 10 7 6.2309 4.0528 -0.4979 11 6 7.6909 4.0547 -0.6183 12 6 8.1831 5.4736 -0.7419 13 6 8.6251 6.2677 0.2610 14 7 8.9657 7.4451 -0.3125 15 6 9.5027 8.6161 0.3850 16 6 9.9787 8.3193 1.8186 17 7 9.3337 9.5970 2.1876 18 6 9.5123 10.5052 3.1968 19 1 8.8926 11.3886 3.2442 20 6 10.4896 10.2904 4.1588 21 7 11.2449 9.2142 4.1008 22 14 10.7327 11.5290 5.5360 23 1 9.4775 11.6498 6.3204 24 1 11.8306 11.0714 6.4252 25 1 11.0836 12.8506 4.9569 26 6 8.4222 9.5023 1.0307 27 7 8.7363 7.3594 -1.5762 28 7 8.2657 6.1973 -1.8640 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9989 3.1540 1.3077 35 1 0.5489 2.1251 1.3970 36 1 2.0698 1.5873 2.1492 37 1 3.8570 0.8801 -1.0113 38 1 4.0029 0.9835 0.7596 39 1 3.7722 3.4493 0.6346 40 1 3.6263 3.3458 -1.1364 41 1 5.7426 4.8909 -0.5064 42 1 7.9831 3.4907 -1.5042 43 1 8.1291 3.5935 0.2668 44 1 8.6962 6.0117 1.3078 45 1 10.2267 9.1711 -0.2117 46 1 9.5072 7.4441 2.2657 47 1 11.0628 8.3244 1.9315 48 1 11.9276 9.0639 4.7733 49 1 8.2660 10.4502 0.5157 50 1 7.4919 8.9759 1.2441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107222266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:57 Heat of formation + Delta-G solvation = 91.652375 kcal Electronic energy + Delta-G solvation = -27873.599151 eV Core-core repulsion = 23939.245608 eV Total energy + Delta-G solvation = -3934.353543 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.09637 -39.85581 -38.39737 -37.44841 -35.23754 -33.43656 -32.65565 -31.98804 -31.23668 -29.18724 -27.99737 -27.09743 -25.70597 -25.24808 -24.40674 -22.79539 -21.95529 -21.09900 -20.44023 -20.14373 -19.64784 -17.66120 -17.17943 -16.67621 -16.36536 -16.08182 -15.61147 -15.33807 -15.14865 -14.87452 -14.73537 -14.16793 -14.01213 -13.80226 -13.68017 -13.35306 -13.11978 -12.94713 -12.68423 -12.29786 -12.24107 -12.13533 -11.99640 -11.94948 -11.86679 -11.40795 -11.24026 -11.20406 -10.99247 -10.96201 -10.88692 -10.83497 -10.73519 -10.56457 -10.28699 -10.05509 -9.90813 -9.58422 -9.17533 -9.12519 -9.06510 -7.29018 -6.07290 -3.42893 1.79070 2.41815 2.56048 2.61431 3.24943 3.29546 3.30729 3.34750 4.19697 4.33480 4.39235 4.48520 4.54612 4.68603 4.71139 4.78023 4.88421 4.92887 5.03743 5.08851 5.12786 5.17724 5.22007 5.23586 5.34129 5.38015 5.45288 5.50639 5.58876 5.63178 5.69664 5.72055 5.73743 5.77253 5.78769 5.93996 6.02089 6.07801 6.10957 6.13454 6.14961 6.26754 6.29120 6.50698 6.76601 6.99976 7.13232 7.39048 7.64743 8.11876 8.70886 8.72742 9.39090 10.16328 11.09834 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.001903 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.472521 B =14713.472713 C =15998.657049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.153 4.153 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.513 3.487 9 O -0.544 6.544 10 N -0.725 5.725 11 C 0.214 3.786 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.234 4.234 19 H 0.087 0.913 20 C 0.000 4.000 21 N -0.919 5.919 22 Si 0.920 3.080 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.281 1.281 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.268 5.268 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.055 0.945 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.403 0.597 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.260 0.740 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.049 -13.364 -7.321 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.112 4.112 4 H 0.088 0.912 5 C -0.210 4.210 6 C -0.137 4.137 7 C -0.182 4.182 8 C 0.300 3.700 9 O -0.421 6.421 10 N -0.378 5.378 11 C 0.089 3.911 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.361 4.361 19 H 0.105 0.895 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.207 1.207 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.111 0.889 41 H 0.237 0.763 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -15.342 -13.197 -8.362 21.897 hybrid contribution -0.004 0.723 1.928 2.059 sum -15.346 -12.474 -6.434 20.797 Atomic orbital electron populations 1.21830 0.96000 1.01460 1.01848 1.21563 0.95727 0.96308 1.02165 1.21207 0.95230 0.96321 0.98479 0.91170 1.21964 1.01281 1.00542 0.97200 1.21395 0.94161 0.94632 1.03481 1.21757 0.91729 1.00339 1.04401 1.20742 0.90271 0.83308 0.75716 1.90703 1.70046 1.31386 1.49945 1.46110 1.07586 1.09200 1.74859 1.19270 0.79631 0.88994 1.03161 1.21738 1.09704 0.98541 0.90180 1.23508 1.04929 0.86634 1.01817 1.47917 1.39228 1.12433 1.06144 1.25292 0.99201 0.83712 0.94294 1.22747 1.00864 0.89603 0.83106 1.45658 1.36823 1.21397 1.28593 1.18956 1.15794 0.99780 1.01554 0.89539 1.24849 0.98024 0.97926 0.98972 1.69749 1.23276 1.26805 1.36641 0.86091 0.77601 0.80198 0.81224 1.20870 1.21300 1.20728 1.22927 0.92825 0.96870 0.88091 1.78275 1.17014 1.15069 0.96443 1.75020 1.15266 0.98345 1.24797 0.92964 0.92506 0.92850 0.91959 0.91927 0.92494 0.92553 0.92591 0.91187 0.91107 0.88670 0.88934 0.76333 0.89854 0.89703 0.79236 0.85031 0.94102 0.89012 0.93020 0.91975 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.76 5.40 -26.73 -0.14 -0.91 16 3 C -0.09 -0.61 2.39 -90.62 -0.22 -0.82 16 4 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 5 C -0.15 -0.94 8.70 37.16 0.32 -0.62 16 6 C -0.10 -0.79 3.97 -26.73 -0.11 -0.90 16 7 C -0.14 -1.09 5.46 -27.88 -0.15 -1.24 16 8 C 0.51 5.69 7.83 -10.98 -0.09 5.60 16 9 O -0.54 -8.03 15.98 5.56 0.09 -7.94 16 10 N -0.73 -7.63 5.55 -61.47 -0.34 -7.97 16 11 C 0.21 2.55 6.23 -5.20 -0.03 2.52 16 12 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 N -0.26 -4.26 3.54 -56.31 -0.20 -4.45 16 15 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 16 C 0.16 3.31 6.90 -2.84 -0.02 3.29 16 17 N -0.60 -13.63 3.70 -177.89 -0.66 -14.29 16 18 C -0.23 -5.97 10.70 -15.06 -0.16 -6.13 16 19 H 0.09 2.12 7.83 -52.48 -0.41 1.71 16 20 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 21 N -0.92 -24.89 11.39 55.49 0.63 -24.26 16 22 Si 0.92 20.52 29.55 -169.99 -5.02 15.50 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 27 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 28 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 29 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 30 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 35 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 36 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 38 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 39 H 0.10 0.61 6.56 -51.93 -0.34 0.27 16 40 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.40 3.68 8.46 -40.82 -0.35 3.33 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.19 2.40 6.73 -52.49 -0.35 2.05 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -30.28 405.54 -7.85 -38.14 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: -8.22 Total: 2.41 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -1.45 Total: 1.48 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.64 Total: -55.70 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.28 -7.85 -38.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107222266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.791 kcal (2) G-P(sol) polarization free energy of solvation -30.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds