Wall clock time and date at job start Tue Mar 31 2020 18:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47139 * 305.00254 * 3 2 1 5 5 C 1.53003 * 109.46970 * 65.00226 * 3 2 1 6 6 C 1.52993 * 109.47066 * 184.99835 * 3 2 1 7 7 C 1.53007 * 109.47057 * 175.00167 * 6 3 2 8 8 C 1.50706 * 109.46908 * 180.02562 * 7 6 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47037 * 60.00258 * 22 20 18 24 24 H 1.48505 * 109.46825 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.46970 * 299.99868 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.09008 * 109.47195 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47532 * 299.99428 * 1 2 3 31 31 H 1.09006 * 109.47683 * 59.99864 * 1 2 3 32 32 H 1.09003 * 109.46831 * 240.00313 * 2 1 3 33 33 H 1.08994 * 109.47145 * 120.00585 * 2 1 3 34 34 H 1.08996 * 109.47407 * 179.97438 * 5 3 2 35 35 H 1.09003 * 109.47177 * 300.00300 * 5 3 2 36 36 H 1.09002 * 109.46865 * 59.99596 * 5 3 2 37 37 H 1.08998 * 109.47296 * 55.00706 * 6 3 2 38 38 H 1.09000 * 109.47603 * 295.00468 * 6 3 2 39 39 H 1.08998 * 109.47160 * 60.00680 * 7 6 3 40 40 H 1.08996 * 109.47236 * 300.00068 * 7 6 3 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5647 1.4443 -0.1257 7 6 4.0644 2.8850 -0.2510 8 6 5.5663 2.8868 -0.3755 9 8 6.1768 1.8390 -0.3654 10 7 6.2309 4.0528 -0.4979 11 6 7.6909 4.0547 -0.6183 12 6 8.1831 5.4736 -0.7419 13 6 8.6251 6.2677 0.2610 14 7 8.9657 7.4451 -0.3125 15 6 9.5027 8.6161 0.3850 16 6 9.9787 8.3193 1.8186 17 7 9.3337 9.5970 2.1876 18 6 9.5123 10.5052 3.1968 19 1 8.8926 11.3886 3.2442 20 6 10.4896 10.2904 4.1588 21 7 11.2449 9.2142 4.1008 22 14 10.7327 11.5290 5.5360 23 1 9.4775 11.6498 6.3204 24 1 11.8306 11.0714 6.4252 25 1 11.0836 12.8506 4.9569 26 6 8.4222 9.5023 1.0307 27 7 8.7363 7.3594 -1.5762 28 7 8.2657 6.1973 -1.8640 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 -0.3635 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.9989 3.1540 1.3077 35 1 0.5489 2.1251 1.3970 36 1 2.0698 1.5873 2.1492 37 1 3.8570 0.8801 -1.0113 38 1 4.0029 0.9835 0.7596 39 1 3.7722 3.4493 0.6346 40 1 3.6263 3.3458 -1.1364 41 1 5.7426 4.8909 -0.5064 42 1 7.9831 3.4907 -1.5042 43 1 8.1291 3.5935 0.2668 44 1 8.6962 6.0117 1.3078 45 1 10.2267 9.1711 -0.2117 46 1 9.5072 7.4441 2.2657 47 1 11.0628 8.3244 1.9315 48 1 11.9276 9.0639 4.7733 49 1 8.2660 10.4502 0.5157 50 1 7.4919 8.9759 1.2441 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107222266.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:56 Heat of formation + Delta-G solvation = 73.216604 kcal Electronic energy + Delta-G solvation = -27874.398586 eV Core-core repulsion = 23939.245608 eV Total energy + Delta-G solvation = -3935.152978 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.35465 -40.75499 -39.93592 -38.02950 -36.27088 -34.95190 -33.68861 -33.27228 -32.32705 -29.81779 -29.66840 -28.01648 -26.87811 -26.31006 -25.95706 -23.50051 -23.37058 -22.28877 -21.27284 -21.12644 -20.69909 -19.04855 -18.52552 -17.85498 -17.51423 -16.96844 -16.84174 -16.70359 -16.07988 -15.87810 -15.71163 -15.58118 -14.86944 -14.76586 -14.56196 -14.42009 -14.21469 -14.03608 -13.69050 -13.55059 -13.39132 -13.31702 -12.96775 -12.77082 -12.74581 -12.63086 -12.59220 -12.45808 -12.43305 -12.14612 -11.81299 -11.80241 -11.71643 -11.43968 -11.36196 -11.26502 -11.09023 -10.95837 -10.85853 -10.26876 -10.10645 -9.10635 -8.00594 -5.35911 0.56537 1.24730 1.29122 1.49265 1.50820 1.56630 1.69205 2.42161 2.44717 3.07676 3.12184 3.31554 3.33890 3.72927 3.79047 3.85737 3.91643 3.99800 4.01006 4.15751 4.19491 4.35101 4.44957 4.50306 4.57458 4.59857 4.60911 4.68481 4.71910 4.76276 4.82261 4.92066 4.94211 5.00755 5.05287 5.10211 5.12758 5.15641 5.22130 5.26672 5.28722 5.33859 5.36731 5.41832 5.61586 5.61631 5.66047 5.77492 6.55130 6.80454 7.26143 7.45542 7.49255 8.34044 9.15922 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013540 B = 0.001903 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2067.472521 B =14713.472713 C =15998.657049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.088 4.088 4 H 0.079 0.921 5 C -0.153 4.153 6 C -0.095 4.095 7 C -0.135 4.135 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.718 5.718 11 C 0.218 3.782 12 C -0.049 4.049 13 C -0.014 4.014 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.627 5.627 18 C -0.240 4.240 19 H 0.091 0.909 20 C -0.055 4.055 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.277 1.277 24 H -0.295 1.295 25 H -0.275 1.275 26 C 0.126 3.874 27 N -0.108 5.108 28 N -0.281 5.281 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.412 0.588 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.207 0.793 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 -12.874 -7.515 23.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.106 4.106 4 H 0.097 0.903 5 C -0.210 4.210 6 C -0.134 4.134 7 C -0.174 4.174 8 C 0.300 3.700 9 O -0.465 6.465 10 N -0.371 5.371 11 C 0.093 3.907 12 C -0.188 4.188 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.039 3.961 17 N -0.354 5.354 18 C -0.368 4.368 19 H 0.109 0.891 20 C -0.249 4.249 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.203 1.203 24 H -0.221 1.221 25 H -0.201 1.201 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.247 0.753 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.155 0.845 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.193 -12.684 -8.596 23.030 hybrid contribution 0.511 0.491 1.913 2.040 sum -16.682 -12.193 -6.683 21.717 Atomic orbital electron populations 1.21815 0.95227 1.01750 1.02153 1.21575 0.96399 0.96282 1.01715 1.21160 0.93878 0.96494 0.99099 0.90281 1.21967 1.01713 1.00694 0.96597 1.21340 0.95293 0.94684 1.02035 1.21792 0.88999 1.00418 1.06232 1.21342 0.91566 0.82575 0.74538 1.90690 1.71108 1.32797 1.51870 1.46039 1.06980 1.09662 1.74379 1.19227 0.80643 0.87588 1.03286 1.21927 1.08682 0.98897 0.89280 1.23829 1.04211 0.86004 1.02651 1.47719 1.39645 1.12596 1.06108 1.24701 0.98587 0.83603 0.92904 1.22620 0.99187 0.89150 0.85192 1.45891 1.38503 1.21868 1.29171 1.19306 1.15212 1.00340 1.01907 0.89114 1.25589 0.98343 0.99660 1.01295 1.69907 1.23986 1.28457 1.37221 0.85150 0.77182 0.78353 0.78616 1.20290 1.22145 1.20122 1.23016 0.92769 0.97867 0.86373 1.78283 1.18082 1.15631 0.96684 1.75008 1.15564 0.98483 1.25733 0.92756 0.92203 0.92486 0.92366 0.92514 0.91843 0.91893 0.93245 0.92599 0.92746 0.86773 0.86796 0.75254 0.90522 0.88905 0.77623 0.84456 0.93501 0.91824 0.93794 0.90596 0.92810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.67 71.98 0.70 -0.80 16 2 C -0.12 -1.45 5.40 30.59 0.17 -1.28 16 3 C -0.09 -1.00 2.39 -10.80 -0.03 -1.03 16 4 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 5 C -0.15 -1.59 8.70 71.98 0.63 -0.96 16 6 C -0.10 -1.45 3.97 30.59 0.12 -1.33 16 7 C -0.13 -1.79 5.46 29.85 0.16 -1.63 16 8 C 0.51 10.67 7.83 87.66 0.69 11.36 16 9 O -0.58 -17.10 15.98 -3.00 -0.05 -17.14 16 10 N -0.72 -13.81 5.55 -466.80 -2.59 -16.40 16 11 C 0.22 4.88 6.23 85.63 0.53 5.42 16 12 C -0.05 -1.27 6.61 41.59 0.28 -1.00 16 13 C -0.01 -0.37 10.72 83.49 0.89 0.53 16 14 N -0.27 -8.18 3.54 -332.05 -1.18 -9.36 16 15 C 0.10 3.41 5.14 46.75 0.24 3.65 16 16 C 0.17 6.61 6.90 86.44 0.60 7.21 16 17 N -0.63 -28.07 3.70 -716.72 -2.65 -30.73 16 18 C -0.24 -12.09 10.70 84.03 0.90 -11.19 16 19 H 0.09 4.35 7.83 -2.91 -0.02 4.33 16 20 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 21 N -0.95 -51.97 11.39 21.65 0.25 -51.72 16 22 Si 0.98 42.08 29.55 68.60 2.03 44.10 16 23 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 24 H -0.30 -12.93 7.11 99.48 0.71 -12.23 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.74 16 26 C 0.13 4.34 8.74 86.48 0.76 5.10 16 27 N -0.11 -3.56 13.17 37.02 0.49 -3.08 16 28 N -0.28 -8.84 12.41 -48.60 -0.60 -9.44 16 29 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.55 6.57 -2.38 -0.02 0.54 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.06 0.57 6.56 -2.39 -0.02 0.56 16 35 H 0.06 0.58 6.57 -2.39 -0.02 0.57 16 36 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 1.00 8.10 -2.39 -0.02 0.98 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 39 H 0.11 1.13 6.56 -2.39 -0.02 1.11 16 40 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.41 6.51 8.46 -92.71 -0.78 5.73 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.21 4.78 6.73 -2.91 -0.02 4.76 16 45 H 0.14 4.37 8.14 -2.38 -0.02 4.35 16 46 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 47 H 0.06 2.92 7.16 -2.39 -0.02 2.91 16 48 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.60 405.54 2.94 -61.66 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.16 Total: 20.43 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 7.09 Total: 11.67 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.29 Total: -120.72 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.05 Total: -17.14 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -64.60 2.94 -61.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107222266.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.874 kcal (2) G-P(sol) polarization free energy of solvation -64.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds