Wall clock time and date at job start Tue Mar 31 2020 18:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.09002 * 109.46620 * 55.00243 * 3 2 1 5 5 C 1.53000 * 109.47477 * 295.00186 * 3 2 1 6 6 C 1.52993 * 109.46956 * 174.99823 * 3 2 1 7 7 C 1.53007 * 109.47057 * 185.00161 * 6 3 2 8 8 C 1.50706 * 109.46908 * 180.02562 * 7 6 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.08997 * 109.47257 * 299.99832 * 1 2 3 30 30 H 1.09002 * 109.47145 * 60.00088 * 1 2 3 31 31 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46760 * 240.00750 * 2 1 3 33 33 H 1.08993 * 109.47194 * 120.00524 * 2 1 3 34 34 H 1.08991 * 109.47146 * 300.00136 * 5 3 2 35 35 H 1.09003 * 109.46721 * 59.99701 * 5 3 2 36 36 H 1.08996 * 109.47364 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47296 * 65.00700 * 6 3 2 38 38 H 1.09000 * 109.47603 * 305.00461 * 6 3 2 39 39 H 1.08998 * 109.47160 * 60.00680 * 7 6 3 40 40 H 1.08996 * 109.47236 * 300.00068 * 7 6 3 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4443 0.1258 7 6 4.0644 2.8850 0.2512 8 6 5.5664 2.8868 0.3745 9 8 6.1771 1.8391 0.3626 10 7 6.2310 4.0528 0.4978 11 6 7.6910 4.0546 0.6182 12 6 8.1832 5.4736 0.7417 13 6 8.4481 6.1420 1.8884 14 7 8.8664 7.3745 1.5183 15 6 9.2714 8.4517 2.4249 16 6 9.5100 7.9864 3.8727 17 7 8.8013 9.2190 4.2770 18 6 8.8042 10.0024 5.4001 19 1 8.1767 10.8802 5.4477 20 6 9.6135 9.6684 6.4772 21 7 10.3784 8.5989 6.4189 22 14 9.6169 10.7368 8.0096 23 1 8.6772 11.8716 7.8239 24 1 9.1907 9.9266 9.1788 25 1 10.9861 11.2618 8.2438 26 6 8.0916 9.2675 2.9839 27 7 8.8471 7.4379 0.2328 28 7 8.4408 6.3215 -0.2604 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0698 1.5877 -2.1491 35 1 0.5489 2.1253 -1.3968 36 1 1.9982 3.1544 -1.3071 37 1 4.0029 0.9837 -0.7596 38 1 3.8570 0.8799 1.0113 39 1 3.6264 3.3457 1.1366 40 1 3.7722 3.4493 -0.6343 41 1 5.7426 4.8908 0.5069 42 1 8.1291 3.5942 -0.2673 43 1 7.9833 3.4899 1.5035 44 1 8.3500 5.7658 2.8960 45 1 10.0776 9.0651 2.0225 46 1 8.9802 7.0699 4.1326 47 1 10.5610 7.9680 4.1608 48 1 10.9437 8.3653 7.1718 49 1 8.0125 10.2701 2.5635 50 1 7.1440 8.7288 2.9803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107222267.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:01 Heat of formation + Delta-G solvation = 91.470528 kcal Electronic energy + Delta-G solvation = -27852.833120 eV Core-core repulsion = 23918.471692 eV Total energy + Delta-G solvation = -3934.361429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.09756 -39.85644 -38.40008 -37.45067 -35.23832 -33.43900 -32.65580 -31.99042 -31.23758 -29.19247 -28.00105 -27.10122 -25.70912 -25.25018 -24.41052 -22.79539 -21.95846 -21.10049 -20.44092 -20.14618 -19.65048 -17.66261 -17.18143 -16.67300 -16.37633 -16.07587 -15.62887 -15.32738 -15.15213 -14.95760 -14.59775 -14.21611 -14.06519 -13.85303 -13.56986 -13.34378 -13.14893 -12.95386 -12.69530 -12.29904 -12.23022 -12.14760 -12.00987 -11.95025 -11.86904 -11.41216 -11.23760 -11.21047 -11.01191 -10.97209 -10.88950 -10.83659 -10.73817 -10.55355 -10.23580 -10.05615 -9.91958 -9.58593 -9.17620 -9.13338 -9.07108 -7.29160 -6.07931 -3.43395 1.78953 2.41717 2.56005 2.61311 3.23746 3.29655 3.32065 3.34670 4.19100 4.33363 4.39117 4.48388 4.54437 4.68486 4.70972 4.77330 4.90672 4.91169 5.03183 5.08586 5.12929 5.17536 5.21467 5.23225 5.33892 5.37789 5.44971 5.50822 5.58695 5.62984 5.68779 5.71301 5.74508 5.76793 5.78006 5.94057 6.01928 6.07620 6.10559 6.13344 6.14694 6.26621 6.29039 6.50540 6.76531 6.99827 7.13365 7.38994 7.64580 8.11830 8.70743 8.72500 9.38684 10.15889 11.09363 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.001869 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.432620 B =14976.593864 C =16095.527273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.094 4.094 4 H 0.070 0.930 5 C -0.152 4.152 6 C -0.099 4.099 7 C -0.142 4.142 8 C 0.513 3.487 9 O -0.544 6.544 10 N -0.725 5.725 11 C 0.214 3.786 12 C -0.063 4.063 13 C -0.015 4.015 14 N -0.265 5.265 15 C 0.077 3.923 16 C 0.163 3.837 17 N -0.598 5.598 18 C -0.232 4.232 19 H 0.088 0.912 20 C -0.001 4.001 21 N -0.919 5.919 22 Si 0.919 3.081 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.287 1.287 26 C 0.120 3.880 27 N -0.089 5.089 28 N -0.268 5.268 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.051 0.949 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.403 0.597 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.042 0.958 47 H 0.092 0.908 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.517 -12.221 -11.860 22.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.113 4.113 4 H 0.089 0.911 5 C -0.209 4.209 6 C -0.137 4.137 7 C -0.182 4.182 8 C 0.300 3.700 9 O -0.421 6.421 10 N -0.378 5.378 11 C 0.089 3.911 12 C -0.202 4.202 13 C -0.169 4.169 14 N -0.057 5.057 15 C -0.025 4.025 16 C 0.037 3.963 17 N -0.325 5.325 18 C -0.359 4.359 19 H 0.106 0.894 20 C -0.198 4.198 21 N -0.565 5.565 22 Si 0.749 3.251 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.007 4.007 27 N -0.068 5.068 28 N -0.134 5.134 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.237 0.763 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.662 -11.932 -12.755 22.175 hybrid contribution -0.309 0.477 1.983 2.063 sum -13.971 -11.455 -10.772 21.034 Atomic orbital electron populations 1.21830 0.95998 1.01465 1.01850 1.21563 0.95731 0.96300 1.02166 1.21209 0.95242 0.96337 0.98480 0.91121 1.21957 1.01268 1.00505 0.97207 1.21394 0.94151 0.94638 1.03483 1.21757 0.91730 1.00333 1.04407 1.20742 0.90277 0.83310 0.75708 1.90703 1.70052 1.31400 1.49923 1.46110 1.07559 1.09197 1.74890 1.19270 0.79620 0.88852 1.03314 1.21738 1.10269 0.98419 0.89734 1.23508 1.04930 0.86449 1.02000 1.47916 1.39956 1.11609 1.06245 1.25290 1.00877 0.87529 0.88799 1.22748 1.00620 0.90352 0.82619 1.45677 1.46754 1.26393 1.13682 1.19053 1.21974 1.04438 0.90461 0.89425 1.24854 0.98647 0.97867 0.98480 1.69769 1.28908 1.26038 1.31739 0.85946 0.77625 0.79290 0.82268 1.20200 1.21427 1.21355 1.22928 0.93193 0.97909 0.86685 1.78275 1.19207 1.17906 0.91410 1.75020 1.14352 0.97159 1.26896 0.92809 0.92542 0.92960 0.91962 0.91920 0.92636 0.92563 0.92520 0.91154 0.91138 0.88875 0.88725 0.76334 0.89855 0.89701 0.79235 0.85029 0.94091 0.89008 0.93125 0.91967 0.93982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.76 5.40 -26.73 -0.14 -0.91 16 3 C -0.09 -0.61 2.39 -90.62 -0.22 -0.82 16 4 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 5 C -0.15 -0.91 8.70 37.16 0.32 -0.58 16 6 C -0.10 -0.79 3.97 -26.73 -0.11 -0.90 16 7 C -0.14 -1.09 5.46 -27.88 -0.15 -1.24 16 8 C 0.51 5.69 7.83 -10.98 -0.09 5.60 16 9 O -0.54 -8.03 15.98 5.56 0.09 -7.94 16 10 N -0.73 -7.62 5.55 -61.47 -0.34 -7.96 16 11 C 0.21 2.55 6.23 -5.20 -0.03 2.52 16 12 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 13 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 14 N -0.26 -4.25 3.54 -56.31 -0.20 -4.45 16 15 C 0.08 1.31 5.14 -70.15 -0.36 0.95 16 16 C 0.16 3.30 6.90 -2.84 -0.02 3.29 16 17 N -0.60 -13.63 3.70 -177.89 -0.66 -14.29 16 18 C -0.23 -5.93 10.70 -15.06 -0.16 -6.09 16 19 H 0.09 2.16 7.83 -52.48 -0.41 1.75 16 20 C 0.00 -0.02 5.50 -17.43 -0.10 -0.12 16 21 N -0.92 -24.91 11.39 55.49 0.63 -24.28 16 22 Si 0.92 20.54 29.55 -169.99 -5.02 15.52 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 24 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.12 2.18 8.74 -2.96 -0.03 2.16 16 27 N -0.09 -1.53 13.17 60.35 0.79 -0.74 16 28 N -0.27 -4.40 12.41 33.29 0.41 -3.99 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.30 6.57 -51.93 -0.34 -0.04 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.31 6.56 -51.93 -0.34 -0.03 16 36 H 0.06 0.32 6.57 -51.93 -0.34 -0.02 16 37 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 38 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.60 6.57 -51.93 -0.34 0.26 16 41 H 0.40 3.67 8.46 -40.82 -0.35 3.33 16 42 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.19 2.40 6.73 -52.49 -0.35 2.04 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 405.54 15.07 6.11 6.11 Total: -1.00 -30.34 405.54 -7.85 -38.19 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -8.22 Total: 2.30 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -1.45 Total: 1.52 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.64 Total: -55.70 kcal Atomic # 8 Polarization: -8.03 SS G_CDS: 0.09 Total: -7.94 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -30.34 -7.85 -38.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107222267.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.663 kcal (2) G-P(sol) polarization free energy of solvation -30.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds