Wall clock time and date at job start Tue Mar 31 2020 18:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47056 * 2 1 4 4 H 1.09002 * 109.46620 * 55.00243 * 3 2 1 5 5 C 1.53000 * 109.47477 * 295.00186 * 3 2 1 6 6 C 1.52993 * 109.46956 * 174.99823 * 3 2 1 7 7 C 1.53007 * 109.47057 * 185.00161 * 6 3 2 8 8 C 1.50706 * 109.46908 * 180.02562 * 7 6 3 9 9 O 1.21271 * 120.00215 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99465 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00017 * 179.97438 * 10 8 7 12 12 C 1.50695 * 109.47705 * 179.97438 * 11 10 8 13 13 C 1.35348 * 126.75026 * 94.99599 * 12 11 10 14 14 N 1.35317 * 106.17735 * 179.78015 * 13 12 11 15 15 C 1.46497 * 125.87017 * 180.21003 * 14 13 12 16 16 C 1.53942 * 113.74196 * 13.74138 * 15 14 13 17 17 N 1.47811 * 86.03642 * 222.08692 * 16 15 14 18 18 C 1.36938 * 134.45712 * 204.64673 * 17 16 15 19 19 H 1.08006 * 119.99731 * 179.86683 * 18 17 16 20 20 C 1.38810 * 119.99900 * 359.86196 * 18 17 16 21 21 N 1.31615 * 120.00084 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 119.99728 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47171 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.46783 * 120.00280 * 22 20 18 25 25 H 1.48496 * 109.46765 * 240.00006 * 22 20 18 26 26 C 1.47587 * 91.05119 * 24.54774 * 17 16 15 27 27 N 1.28721 * 108.26102 * 0.22816 * 14 13 12 28 28 N 1.28636 * 110.17709 * 0.02562 * 27 14 13 29 29 H 1.08997 * 109.47257 * 299.99832 * 1 2 3 30 30 H 1.09002 * 109.47145 * 60.00088 * 1 2 3 31 31 H 1.09006 * 109.46995 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46760 * 240.00750 * 2 1 3 33 33 H 1.08993 * 109.47194 * 120.00524 * 2 1 3 34 34 H 1.08991 * 109.47146 * 300.00136 * 5 3 2 35 35 H 1.09003 * 109.46721 * 59.99701 * 5 3 2 36 36 H 1.08996 * 109.47364 * 179.97438 * 5 3 2 37 37 H 1.08998 * 109.47296 * 65.00700 * 6 3 2 38 38 H 1.09000 * 109.47603 * 305.00461 * 6 3 2 39 39 H 1.08998 * 109.47160 * 60.00680 * 7 6 3 40 40 H 1.08996 * 109.47236 * 300.00068 * 7 6 3 41 41 H 0.96996 * 120.00676 * 359.97438 * 10 8 7 42 42 H 1.09004 * 109.46926 * 59.99730 * 11 10 8 43 43 H 1.09001 * 109.47077 * 300.00602 * 11 10 8 44 44 H 1.08002 * 126.91502 * 0.05047 * 13 12 11 45 45 H 1.09004 * 112.94415 * 145.33322 * 15 14 13 46 46 H 1.09001 * 113.77001 * 336.34585 * 16 15 14 47 47 H 1.08996 * 113.77272 * 107.74936 * 16 15 14 48 48 H 0.97005 * 119.99940 * 180.02562 * 21 20 18 49 49 H 1.09000 * 113.76860 * 221.15477 * 26 17 16 50 50 H 1.09000 * 113.86642 * 89.77210 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9814 0.8419 5 6 1.6352 2.1266 -1.3073 6 6 3.5647 1.4443 0.1258 7 6 4.0644 2.8850 0.2512 8 6 5.5664 2.8868 0.3745 9 8 6.1771 1.8391 0.3626 10 7 6.2310 4.0528 0.4978 11 6 7.6910 4.0546 0.6182 12 6 8.1832 5.4736 0.7417 13 6 8.4481 6.1420 1.8884 14 7 8.8664 7.3745 1.5183 15 6 9.2714 8.4517 2.4249 16 6 9.5100 7.9864 3.8727 17 7 8.8013 9.2190 4.2770 18 6 8.8042 10.0024 5.4001 19 1 8.1767 10.8802 5.4477 20 6 9.6135 9.6684 6.4772 21 7 10.3784 8.5989 6.4189 22 14 9.6169 10.7368 8.0096 23 1 8.6772 11.8716 7.8239 24 1 9.1907 9.9266 9.1788 25 1 10.9861 11.2618 8.2438 26 6 8.0916 9.2675 2.9839 27 7 8.8471 7.4379 0.2328 28 7 8.4408 6.3215 -0.2604 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5137 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.0698 1.5877 -2.1491 35 1 0.5489 2.1253 -1.3968 36 1 1.9982 3.1544 -1.3071 37 1 4.0029 0.9837 -0.7596 38 1 3.8570 0.8799 1.0113 39 1 3.6264 3.3457 1.1366 40 1 3.7722 3.4493 -0.6343 41 1 5.7426 4.8908 0.5069 42 1 8.1291 3.5942 -0.2673 43 1 7.9833 3.4899 1.5035 44 1 8.3500 5.7658 2.8960 45 1 10.0776 9.0651 2.0225 46 1 8.9802 7.0699 4.1326 47 1 10.5610 7.9680 4.1608 48 1 10.9437 8.3653 7.1718 49 1 8.0125 10.2701 2.5635 50 1 7.1440 8.7288 2.9803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107222267.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:00 Heat of formation + Delta-G solvation = 72.980597 kcal Electronic energy + Delta-G solvation = -27853.634904 eV Core-core repulsion = 23918.471692 eV Total energy + Delta-G solvation = -3935.163212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.35493 -40.75506 -39.93825 -38.02943 -36.27122 -34.95478 -33.69034 -33.27271 -32.32725 -29.81914 -29.67179 -28.01650 -26.87918 -26.31142 -25.96037 -23.50164 -23.37312 -22.28939 -21.27288 -21.12902 -20.69880 -19.05105 -18.52820 -17.85204 -17.51672 -16.98105 -16.83793 -16.71357 -16.03334 -15.94938 -15.75236 -15.44796 -14.95167 -14.80827 -14.50766 -14.41733 -14.19221 -14.03524 -13.69270 -13.60188 -13.40627 -13.27750 -12.96697 -12.80747 -12.76883 -12.64865 -12.57850 -12.46175 -12.42712 -12.06717 -11.81249 -11.79058 -11.72819 -11.43890 -11.36210 -11.26565 -11.09662 -10.97586 -10.86351 -10.26899 -10.10645 -9.10889 -8.01293 -5.36447 0.56510 1.24718 1.29100 1.47887 1.49677 1.58282 1.69207 2.41685 2.44482 3.07489 3.12098 3.31320 3.33781 3.72948 3.78993 3.85732 3.91591 4.00234 4.00620 4.15675 4.19381 4.35518 4.44575 4.50097 4.57405 4.59569 4.61253 4.69247 4.71471 4.76220 4.82269 4.91873 4.94414 5.00735 5.05234 5.10137 5.12756 5.15714 5.21923 5.26772 5.28608 5.33885 5.36865 5.41833 5.61518 5.61741 5.65995 5.77234 6.55137 6.80398 7.26150 7.45517 7.48783 8.33572 9.15695 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.013917 B = 0.001869 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.432620 B =14976.593864 C =16095.527273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.089 4.089 4 H 0.078 0.922 5 C -0.152 4.152 6 C -0.095 4.095 7 C -0.135 4.135 8 C 0.511 3.489 9 O -0.585 6.585 10 N -0.718 5.718 11 C 0.218 3.782 12 C -0.049 4.049 13 C -0.014 4.014 14 N -0.268 5.268 15 C 0.104 3.896 16 C 0.165 3.835 17 N -0.628 5.628 18 C -0.237 4.237 19 H 0.092 0.908 20 C -0.056 4.056 21 N -0.949 5.949 22 Si 0.979 3.021 23 H -0.264 1.264 24 H -0.293 1.293 25 H -0.292 1.292 26 C 0.126 3.874 27 N -0.108 5.108 28 N -0.281 5.281 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.049 0.951 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.114 0.886 40 H 0.114 0.886 41 H 0.412 0.588 42 H 0.076 0.924 43 H 0.093 0.907 44 H 0.207 0.793 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.302 -11.685 -12.259 23.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.107 4.107 4 H 0.096 0.904 5 C -0.209 4.209 6 C -0.133 4.133 7 C -0.174 4.174 8 C 0.300 3.700 9 O -0.465 6.465 10 N -0.371 5.371 11 C 0.093 3.907 12 C -0.188 4.188 13 C -0.167 4.167 14 N -0.061 5.061 15 C 0.002 3.998 16 C 0.038 3.962 17 N -0.355 5.355 18 C -0.365 4.365 19 H 0.109 0.891 20 C -0.250 4.250 21 N -0.596 5.596 22 Si 0.807 3.193 23 H -0.189 1.189 24 H -0.220 1.220 25 H -0.219 1.219 26 C 0.000 4.000 27 N -0.087 5.087 28 N -0.148 5.148 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.132 0.868 40 H 0.132 0.868 41 H 0.247 0.753 42 H 0.095 0.905 43 H 0.111 0.889 44 H 0.224 0.776 45 H 0.156 0.844 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.484 -11.367 -13.199 23.306 hybrid contribution 0.215 0.237 2.017 2.043 sum -15.269 -11.130 -11.182 21.956 Atomic orbital electron populations 1.21814 0.95235 1.01748 1.02152 1.21575 0.96393 0.96292 1.01712 1.21163 0.93879 0.96497 0.99154 0.90382 1.21958 1.01718 1.00677 0.96540 1.21339 0.95290 0.94686 1.02032 1.21792 0.88998 1.00411 1.06242 1.21343 0.91573 0.82578 0.74527 1.90690 1.71117 1.32815 1.51846 1.46039 1.06939 1.09657 1.74424 1.19227 0.80556 0.87526 1.03436 1.21927 1.09188 0.98689 0.88983 1.23829 1.04169 0.85804 1.02892 1.47718 1.40447 1.11892 1.06013 1.24699 1.00474 0.87145 0.87474 1.22621 0.98865 0.90070 0.84612 1.45909 1.48124 1.27010 1.14418 1.19382 1.21119 1.04672 0.91299 0.89070 1.25590 0.98997 0.99226 1.01167 1.69919 1.29970 1.27643 1.32105 0.85011 0.77305 0.78074 0.78905 1.18850 1.21979 1.21917 1.23018 0.93546 0.99017 0.84440 1.78283 1.20298 1.18481 0.91612 1.75008 1.14692 0.97450 1.27639 0.92574 0.92118 0.92760 0.92425 0.92460 0.93154 0.91889 0.91833 0.92719 0.92638 0.86750 0.86808 0.75252 0.90533 0.88898 0.77622 0.84449 0.93489 0.91830 0.93807 0.90576 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.67 71.98 0.70 -0.81 16 2 C -0.12 -1.45 5.40 30.59 0.17 -1.29 16 3 C -0.09 -1.01 2.39 -10.80 -0.03 -1.03 16 4 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 5 C -0.15 -1.51 8.70 71.98 0.63 -0.89 16 6 C -0.10 -1.45 3.97 30.59 0.12 -1.33 16 7 C -0.13 -1.79 5.46 29.85 0.16 -1.63 16 8 C 0.51 10.67 7.83 87.66 0.69 11.36 16 9 O -0.58 -17.10 15.98 -3.00 -0.05 -17.14 16 10 N -0.72 -13.80 5.55 -466.80 -2.59 -16.39 16 11 C 0.22 4.88 6.23 85.63 0.53 5.41 16 12 C -0.05 -1.27 6.61 41.59 0.28 -1.00 16 13 C -0.01 -0.37 10.72 83.49 0.89 0.53 16 14 N -0.27 -8.17 3.54 -332.05 -1.18 -9.35 16 15 C 0.10 3.40 5.14 46.75 0.24 3.65 16 16 C 0.16 6.60 6.90 86.44 0.60 7.20 16 17 N -0.63 -28.05 3.70 -716.72 -2.65 -30.70 16 18 C -0.24 -11.93 10.70 84.03 0.90 -11.03 16 19 H 0.09 4.39 7.83 -2.91 -0.02 4.37 16 20 C -0.06 -2.89 5.50 84.86 0.47 -2.43 16 21 N -0.95 -52.03 11.39 21.65 0.25 -51.79 16 22 Si 0.98 42.15 29.55 68.60 2.03 44.18 16 23 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 26 C 0.13 4.33 8.74 86.48 0.76 5.09 16 27 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 28 N -0.28 -8.83 12.41 -48.60 -0.60 -9.43 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 0.55 6.57 -2.39 -0.02 0.53 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.55 6.56 -2.39 -0.02 0.54 16 36 H 0.06 0.54 6.57 -2.39 -0.02 0.53 16 37 H 0.05 1.00 8.10 -2.39 -0.02 0.98 16 38 H 0.05 1.00 8.10 -2.39 -0.02 0.99 16 39 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.11 1.12 6.57 -2.39 -0.02 1.10 16 41 H 0.41 6.50 8.46 -92.71 -0.78 5.72 16 42 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.21 4.77 6.73 -2.91 -0.02 4.75 16 45 H 0.14 4.36 8.14 -2.38 -0.02 4.34 16 46 H 0.05 1.82 6.31 -2.39 -0.02 1.80 16 47 H 0.06 2.92 7.16 -2.39 -0.02 2.90 16 48 H 0.25 13.56 8.31 -92.70 -0.77 12.79 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -64.72 405.54 2.94 -61.78 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: 0.16 Total: 20.11 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 7.09 Total: 11.80 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -6.29 Total: -120.72 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -0.05 Total: -17.14 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -64.72 2.94 -61.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107222267.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.764 kcal (2) G-P(sol) polarization free energy of solvation -64.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds