Wall clock time and date at job start Tue Mar 31 2020 18:48:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 5 5 C 1.53000 * 109.47060 * 294.99938 * 3 2 1 6 6 C 1.53001 * 109.47049 * 174.99763 * 3 2 1 7 7 H 1.08998 * 109.47250 * 59.99881 * 6 3 2 8 8 C 1.52998 * 109.46988 * 299.99593 * 6 3 2 9 9 C 1.50703 * 109.47033 * 179.97438 * 6 3 2 10 10 O 1.21285 * 119.99919 * 0.02562 * 9 6 3 11 11 N 1.34773 * 120.00031 * 180.02562 * 9 6 3 12 12 C 1.46507 * 120.00180 * 180.02562 * 11 9 6 13 13 C 1.50695 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.35351 * 126.75270 * 94.70854 * 13 12 11 15 15 N 1.35307 * 106.17612 * 179.85006 * 14 13 12 16 16 C 1.46504 * 125.86740 * 180.18689 * 15 14 13 17 17 C 1.53950 * 113.74235 * 14.03897 * 16 15 14 18 18 N 1.47817 * 86.03380 * 222.08358 * 17 16 15 19 19 C 1.36936 * 134.45147 * 204.64384 * 18 17 16 20 20 H 1.07995 * 119.99454 * 179.86929 * 19 18 17 21 21 C 1.38816 * 120.00025 * 359.86529 * 19 18 17 22 22 N 1.31620 * 120.00270 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99600 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47223 * 60.00420 * 23 21 19 25 25 H 1.48503 * 109.46563 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47203 * 299.99889 * 23 21 19 27 27 C 1.47577 * 91.05119 * 24.54850 * 18 17 16 28 28 N 1.28715 * 108.26726 * 0.42025 * 15 14 13 29 29 N 1.28639 * 110.17264 * 359.73281 * 28 15 14 30 30 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 34 34 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 35 35 H 1.09004 * 109.47014 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.46849 * 299.99880 * 5 3 2 37 37 H 1.09000 * 109.47227 * 59.99725 * 5 3 2 38 38 H 1.08998 * 109.47360 * 300.00221 * 8 6 3 39 39 H 1.09000 * 109.47063 * 60.00318 * 8 6 3 40 40 H 1.09000 * 109.46873 * 179.97438 * 8 6 3 41 41 H 0.97002 * 120.00215 * 359.97438 * 11 9 6 42 42 H 1.08998 * 109.46812 * 299.99704 * 12 11 9 43 43 H 1.09002 * 109.46840 * 59.99817 * 12 11 9 44 44 H 1.08003 * 126.91021 * 0.02562 * 14 13 12 45 45 H 1.08997 * 112.94488 * 145.62998 * 16 15 14 46 46 H 1.09000 * 113.76545 * 336.35274 * 17 16 15 47 47 H 1.08999 * 113.76700 * 107.74203 * 17 16 15 48 48 H 0.96993 * 120.00045 * 179.97438 * 22 21 19 49 49 H 1.09003 * 113.76970 * 221.14880 * 27 18 17 50 50 H 1.09001 * 113.87285 * 89.76543 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.9995 0.9052 -0.7160 8 6 3.9695 0.7603 1.4332 9 6 4.0673 2.8651 0.1251 10 8 3.2829 3.7856 0.0336 11 7 5.3882 3.1128 0.2263 12 6 5.8766 4.4941 0.2262 13 6 7.3784 4.4959 0.3500 14 6 8.2745 4.5544 -0.6628 15 7 9.4979 4.5340 -0.0853 16 6 10.7810 4.5836 -0.7907 17 6 10.6611 5.0047 -2.2666 18 7 11.6465 3.9384 -2.5442 19 6 12.5610 3.7130 -3.5382 20 1 13.1837 2.8311 -3.5091 21 6 12.6875 4.6179 -4.5832 22 7 11.9289 5.6929 -4.6185 23 14 13.9356 4.3106 -5.9388 24 1 13.6270 3.0243 -6.6135 25 1 13.8741 5.4164 -6.9281 26 1 15.2983 4.2474 -5.3520 27 6 11.2508 3.2163 -1.3196 28 7 9.3409 4.4586 1.1900 29 7 8.0884 4.4341 1.4821 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.9990 3.1541 -1.3075 36 1 2.0700 1.5874 -2.1491 37 1 0.5490 2.1252 -1.3970 38 1 3.5349 1.2994 2.2749 39 1 3.6062 -0.2673 1.4332 40 1 5.0559 0.7612 1.5226 41 1 6.0155 2.3767 0.2999 42 1 5.5878 4.9815 -0.7050 43 1 5.4423 5.0330 1.0683 44 1 8.0566 4.6094 -1.7192 45 1 11.5480 5.1281 -0.2399 46 1 9.6779 4.8176 -2.6982 47 1 11.0312 6.0099 -2.4680 48 1 12.0176 6.3254 -5.3485 49 1 12.0909 2.7962 -0.7664 50 1 10.4414 2.5021 -1.4707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107225344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:55 Heat of formation + Delta-G solvation = 100.280585 kcal Electronic energy + Delta-G solvation = -28594.900462 eV Core-core repulsion = 24660.921066 eV Total energy + Delta-G solvation = -3933.979396 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.09870 -40.27030 -38.40306 -37.04606 -35.21092 -33.47748 -32.58676 -31.93636 -31.06169 -29.41290 -28.00142 -26.92387 -25.31649 -24.71135 -24.43928 -23.92773 -21.96297 -21.16814 -20.73024 -19.83975 -19.62803 -17.66787 -17.18861 -16.68281 -16.44417 -15.72807 -15.44557 -15.36121 -15.14311 -14.70183 -14.48565 -14.37690 -14.12613 -13.75548 -13.44378 -13.26653 -13.07972 -12.94872 -12.60597 -12.27121 -12.13807 -12.13125 -12.02507 -11.86992 -11.78934 -11.47694 -11.40964 -11.20469 -11.01314 -10.97154 -10.94364 -10.78947 -10.66499 -10.56238 -10.28625 -9.92354 -9.77829 -9.57243 -9.13714 -9.11684 -9.05375 -7.29139 -6.07380 -3.42972 1.78971 2.41479 2.55200 2.61421 3.24874 3.29462 3.30651 3.33738 4.19620 4.33276 4.37865 4.48060 4.59258 4.68718 4.71037 4.83473 4.89469 4.97074 5.02478 5.12418 5.17487 5.21712 5.32765 5.36410 5.37759 5.46685 5.50234 5.54665 5.57604 5.61590 5.72909 5.73948 5.76785 5.81597 5.94972 6.00096 6.02013 6.07684 6.13386 6.18953 6.23518 6.27292 6.45269 6.50638 6.76535 6.99872 7.13142 7.39555 7.64686 8.13173 8.70861 8.72714 9.38975 10.16225 11.09772 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.002110 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.231015 B =13268.541414 C =14203.528868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.070 4.070 4 H 0.076 0.924 5 C -0.161 4.161 6 C -0.108 4.108 7 H 0.097 0.903 8 C -0.147 4.147 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.723 5.723 12 C 0.215 3.785 13 C -0.063 4.063 14 C -0.015 4.015 15 N -0.265 5.265 16 C 0.077 3.923 17 C 0.164 3.836 18 N -0.598 5.598 19 C -0.234 4.234 20 H 0.087 0.913 21 C -0.001 4.001 22 N -0.919 5.919 23 Si 0.920 3.080 24 H -0.282 1.282 25 H -0.287 1.287 26 H -0.281 1.281 27 C 0.120 3.880 28 N -0.089 5.089 29 N -0.267 5.267 30 H 0.057 0.943 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.045 0.955 37 H 0.052 0.948 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.060 0.940 41 H 0.402 0.598 42 H 0.085 0.915 43 H 0.083 0.917 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.041 0.959 47 H 0.092 0.908 48 H 0.260 0.740 49 H 0.062 0.938 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.083 -8.728 8.682 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.089 4.089 4 H 0.094 0.906 5 C -0.218 4.218 6 C -0.129 4.129 7 H 0.115 0.885 8 C -0.205 4.205 9 C 0.306 3.694 10 O -0.414 6.414 11 N -0.375 5.375 12 C 0.090 3.910 13 C -0.202 4.202 14 C -0.169 4.169 15 N -0.057 5.057 16 C -0.025 4.025 17 C 0.037 3.963 18 N -0.325 5.325 19 C -0.360 4.360 20 H 0.105 0.895 21 C -0.198 4.198 22 N -0.565 5.565 23 Si 0.749 3.251 24 H -0.209 1.209 25 H -0.213 1.213 26 H -0.207 1.207 27 C -0.007 4.007 28 N -0.068 5.068 29 N -0.134 5.134 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.102 0.898 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.079 0.921 41 H 0.236 0.764 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.207 0.793 45 H 0.150 0.850 46 H 0.059 0.941 47 H 0.110 0.890 48 H 0.070 0.930 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -16.684 -8.022 9.667 20.884 hybrid contribution 0.662 -0.445 -1.935 2.093 sum -16.022 -8.466 7.731 19.702 Atomic orbital electron populations 1.21807 0.95819 1.01347 1.02057 1.21680 0.96068 0.96270 1.02056 1.20943 0.92119 0.95960 0.99828 0.90568 1.22117 1.01062 1.02884 0.95746 1.21391 0.97800 0.93130 1.00569 0.88536 1.21854 1.01713 1.01033 0.95881 1.20623 0.81741 0.91525 0.75538 1.90638 1.54985 1.46570 1.49205 1.46108 1.07643 1.08847 1.74913 1.19272 0.85096 0.83389 1.03273 1.21737 0.96773 1.11855 0.89792 1.23505 0.84273 1.07374 1.01750 1.47913 1.08626 1.43697 1.05482 1.25294 0.80441 1.02396 0.94370 1.22748 0.93352 0.96928 0.83276 1.45660 1.40017 1.22381 1.24421 1.18952 1.11216 1.06656 0.99216 0.89539 1.24857 0.99500 0.96823 0.98648 1.69746 1.40959 1.12278 1.33498 0.86086 0.80589 0.77358 0.81061 1.20859 1.21304 1.20732 1.22926 0.97646 0.92002 0.88143 1.78276 1.12940 1.19603 0.95989 1.75019 0.96830 1.16582 1.24973 0.92411 0.92980 0.92792 0.91653 0.92002 0.89838 0.93543 0.92874 0.91959 0.91101 0.92072 0.76372 0.89696 0.89838 0.79253 0.85030 0.94106 0.89018 0.93016 0.91976 0.93998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.12 -0.83 5.19 -26.73 -0.14 -0.97 16 3 C -0.07 -0.59 1.61 -90.62 -0.15 -0.73 16 4 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 5 C -0.16 -1.52 8.63 37.16 0.32 -1.19 16 6 C -0.11 -0.89 2.32 -91.77 -0.21 -1.10 16 7 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.15 -1.02 8.75 37.16 0.32 -0.70 16 9 C 0.52 5.73 6.86 -10.99 -0.08 5.66 16 10 O -0.54 -7.57 13.66 5.55 0.08 -7.49 16 11 N -0.72 -7.60 5.44 -61.47 -0.33 -7.93 16 12 C 0.21 2.53 6.23 -5.19 -0.03 2.49 16 13 C -0.06 -0.87 6.61 -82.78 -0.55 -1.41 16 14 C -0.02 -0.22 10.72 -17.05 -0.18 -0.40 16 15 N -0.26 -4.25 3.54 -56.30 -0.20 -4.45 16 16 C 0.08 1.31 5.14 -70.14 -0.36 0.95 16 17 C 0.16 3.31 6.90 -2.83 -0.02 3.29 16 18 N -0.60 -13.63 3.70 -177.88 -0.66 -14.29 16 19 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 20 H 0.09 2.12 7.83 -52.49 -0.41 1.71 16 21 C 0.00 -0.02 5.50 -17.43 -0.10 -0.11 16 22 N -0.92 -24.92 11.39 55.49 0.63 -24.29 16 23 Si 0.92 20.54 29.55 -169.99 -5.02 15.51 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.12 2.18 8.74 -2.97 -0.03 2.16 16 28 N -0.09 -1.53 13.17 60.35 0.79 -0.73 16 29 N -0.27 -4.38 12.41 33.29 0.41 -3.96 16 30 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.39 6.17 -51.93 -0.32 0.07 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.99 5.51 -51.93 -0.29 0.70 16 36 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.07 0.40 6.32 -51.93 -0.33 0.07 16 40 H 0.06 0.41 7.57 -51.93 -0.39 0.02 16 41 H 0.40 3.77 7.88 -40.82 -0.32 3.45 16 42 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.19 2.39 6.74 -52.48 -0.35 2.04 16 45 H 0.13 2.17 8.14 -51.93 -0.42 1.75 16 46 H 0.04 0.81 6.31 -51.93 -0.33 0.48 16 47 H 0.09 2.07 7.16 -51.93 -0.37 1.70 16 48 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 398.34 15.07 6.00 6.00 Total: -1.00 -29.68 398.34 -7.29 -36.97 By element: Atomic # 1 Polarization: 11.49 SS G_CDS: -8.00 Total: 3.49 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -0.99 Total: 1.17 kcal Atomic # 7 Polarization: -56.30 SS G_CDS: 0.65 Total: -55.66 kcal Atomic # 8 Polarization: -7.57 SS G_CDS: 0.08 Total: -7.49 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -29.68 -7.29 -36.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107225344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.250 kcal (2) G-P(sol) polarization free energy of solvation -29.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds