Wall clock time and date at job start Tue Mar 31 2020 18:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47127 * 2 1 4 4 H 1.09006 * 109.47500 * 54.99635 * 3 2 1 5 5 C 1.53000 * 109.47060 * 294.99938 * 3 2 1 6 6 C 1.53001 * 109.47049 * 174.99763 * 3 2 1 7 7 H 1.08998 * 109.47250 * 59.99881 * 6 3 2 8 8 C 1.52998 * 109.46988 * 299.99593 * 6 3 2 9 9 C 1.50703 * 109.47033 * 179.97438 * 6 3 2 10 10 O 1.21285 * 119.99919 * 0.02562 * 9 6 3 11 11 N 1.34773 * 120.00031 * 180.02562 * 9 6 3 12 12 C 1.46507 * 120.00180 * 180.02562 * 11 9 6 13 13 C 1.50695 * 109.47075 * 179.97438 * 12 11 9 14 14 C 1.35351 * 126.75270 * 94.70854 * 13 12 11 15 15 N 1.35307 * 106.17612 * 179.85006 * 14 13 12 16 16 C 1.46504 * 125.86740 * 180.18689 * 15 14 13 17 17 C 1.53950 * 113.74235 * 14.03897 * 16 15 14 18 18 N 1.47817 * 86.03380 * 222.08358 * 17 16 15 19 19 C 1.36936 * 134.45147 * 204.64384 * 18 17 16 20 20 H 1.07995 * 119.99454 * 179.86929 * 19 18 17 21 21 C 1.38816 * 120.00025 * 359.86529 * 19 18 17 22 22 N 1.31620 * 120.00270 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99600 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47223 * 60.00420 * 23 21 19 25 25 H 1.48503 * 109.46563 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47203 * 299.99889 * 23 21 19 27 27 C 1.47577 * 91.05119 * 24.54850 * 18 17 16 28 28 N 1.28715 * 108.26726 * 0.42025 * 15 14 13 29 29 N 1.28639 * 110.17264 * 359.73281 * 28 15 14 30 30 H 1.09001 * 109.46998 * 59.99868 * 1 2 3 31 31 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46801 * 300.00272 * 1 2 3 33 33 H 1.09001 * 109.47002 * 119.99574 * 2 1 3 34 34 H 1.08993 * 109.46955 * 240.00011 * 2 1 3 35 35 H 1.09004 * 109.47014 * 180.02562 * 5 3 2 36 36 H 1.08998 * 109.46849 * 299.99880 * 5 3 2 37 37 H 1.09000 * 109.47227 * 59.99725 * 5 3 2 38 38 H 1.08998 * 109.47360 * 300.00221 * 8 6 3 39 39 H 1.09000 * 109.47063 * 60.00318 * 8 6 3 40 40 H 1.09000 * 109.46873 * 179.97438 * 8 6 3 41 41 H 0.97002 * 120.00215 * 359.97438 * 11 9 6 42 42 H 1.08998 * 109.46812 * 299.99704 * 12 11 9 43 43 H 1.09002 * 109.46840 * 59.99817 * 12 11 9 44 44 H 1.08003 * 126.91021 * 0.02562 * 14 13 12 45 45 H 1.08997 * 112.94488 * 145.62998 * 16 15 14 46 46 H 1.09000 * 113.76545 * 336.35274 * 17 16 15 47 47 H 1.08999 * 113.76700 * 107.74203 * 17 16 15 48 48 H 0.96993 * 120.00045 * 179.97438 * 22 21 19 49 49 H 1.09003 * 113.76970 * 221.14880 * 27 18 17 50 50 H 1.09001 * 113.87285 * 89.76543 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5649 1.4443 0.1258 7 1 3.9995 0.9052 -0.7160 8 6 3.9695 0.7603 1.4332 9 6 4.0673 2.8651 0.1251 10 8 3.2829 3.7856 0.0336 11 7 5.3882 3.1128 0.2263 12 6 5.8766 4.4941 0.2262 13 6 7.3784 4.4959 0.3500 14 6 8.2745 4.5544 -0.6628 15 7 9.4979 4.5340 -0.0853 16 6 10.7810 4.5836 -0.7907 17 6 10.6611 5.0047 -2.2666 18 7 11.6465 3.9384 -2.5442 19 6 12.5610 3.7130 -3.5382 20 1 13.1837 2.8311 -3.5091 21 6 12.6875 4.6179 -4.5832 22 7 11.9289 5.6929 -4.6185 23 14 13.9356 4.3106 -5.9388 24 1 13.6270 3.0243 -6.6135 25 1 13.8741 5.4164 -6.9281 26 1 15.2983 4.2474 -5.3520 27 6 11.2508 3.2163 -1.3196 28 7 9.3409 4.4586 1.1900 29 7 8.0884 4.4341 1.4821 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8899 35 1 1.9990 3.1541 -1.3075 36 1 2.0700 1.5874 -2.1491 37 1 0.5490 2.1252 -1.3970 38 1 3.5349 1.2994 2.2749 39 1 3.6062 -0.2673 1.4332 40 1 5.0559 0.7612 1.5226 41 1 6.0155 2.3767 0.2999 42 1 5.5878 4.9815 -0.7050 43 1 5.4423 5.0330 1.0683 44 1 8.0566 4.6094 -1.7192 45 1 11.5480 5.1281 -0.2399 46 1 9.6779 4.8176 -2.6982 47 1 11.0312 6.0099 -2.4680 48 1 12.0176 6.3254 -5.3485 49 1 12.0909 2.7962 -0.7664 50 1 10.4414 2.5021 -1.4707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107225344.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:54 Heat of formation + Delta-G solvation = 82.200033 kcal Electronic energy + Delta-G solvation = -28595.684493 eV Core-core repulsion = 24660.921066 eV Total energy + Delta-G solvation = -3934.763427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.35592 -41.12572 -39.94489 -37.76523 -36.22452 -34.97142 -33.73642 -33.20319 -32.08732 -30.06985 -29.70780 -27.97343 -26.83642 -26.01848 -25.34178 -24.65849 -23.41986 -22.35673 -21.51818 -21.13774 -20.54434 -19.04711 -18.52115 -17.87087 -17.54488 -16.97236 -16.83209 -16.36914 -16.03537 -15.94509 -15.70871 -15.21752 -15.12171 -14.80382 -14.58037 -14.42962 -14.03871 -13.88987 -13.67468 -13.57359 -13.39873 -13.26944 -12.97457 -12.75417 -12.73255 -12.67341 -12.62504 -12.45815 -12.42127 -12.15072 -12.08075 -11.80132 -11.71965 -11.63709 -11.42876 -11.26702 -11.03812 -10.89490 -10.67885 -10.20245 -10.06189 -9.10975 -8.00848 -5.36181 0.56465 1.24449 1.29192 1.48991 1.50624 1.56416 1.68879 2.41351 2.43897 3.07405 3.12118 3.31263 3.33703 3.69817 3.73617 3.79359 3.91398 3.97403 4.00103 4.15574 4.23281 4.39505 4.42245 4.49710 4.56471 4.58516 4.64902 4.69454 4.71542 4.80244 4.85023 4.92206 4.96724 5.00662 5.01174 5.05230 5.10036 5.15577 5.18864 5.23894 5.32765 5.36470 5.38907 5.42624 5.58172 5.65882 5.68625 5.77234 6.54965 6.80241 7.27333 7.45617 7.48943 8.33753 9.15701 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.002110 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.231015 B =13268.541414 C =14203.528868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.119 4.119 3 C -0.067 4.067 4 H 0.059 0.941 5 C -0.159 4.159 6 C -0.102 4.102 7 H 0.113 0.887 8 C -0.144 4.144 9 C 0.516 3.484 10 O -0.570 6.570 11 N -0.717 5.717 12 C 0.219 3.781 13 C -0.048 4.048 14 C -0.014 4.014 15 N -0.268 5.268 16 C 0.104 3.896 17 C 0.165 3.835 18 N -0.627 5.627 19 C -0.239 4.239 20 H 0.091 0.909 21 C -0.056 4.056 22 N -0.949 5.949 23 Si 0.980 3.020 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.275 1.275 27 C 0.126 3.874 28 N -0.108 5.108 29 N -0.281 5.281 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.089 0.911 40 H 0.065 0.935 41 H 0.409 0.591 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.207 0.793 45 H 0.138 0.862 46 H 0.047 0.953 47 H 0.063 0.937 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.379 -10.702 8.969 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.086 4.086 4 H 0.078 0.922 5 C -0.216 4.216 6 C -0.123 4.123 7 H 0.131 0.869 8 C -0.201 4.201 9 C 0.305 3.695 10 O -0.450 6.450 11 N -0.369 5.369 12 C 0.094 3.906 13 C -0.188 4.188 14 C -0.167 4.167 15 N -0.061 5.061 16 C 0.002 3.998 17 C 0.039 3.961 18 N -0.355 5.355 19 C -0.367 4.367 20 H 0.109 0.891 21 C -0.250 4.250 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.203 1.203 25 H -0.222 1.222 26 H -0.201 1.201 27 C 0.000 4.000 28 N -0.087 5.087 29 N -0.147 5.147 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.245 0.755 42 H 0.111 0.889 43 H 0.095 0.905 44 H 0.223 0.777 45 H 0.156 0.844 46 H 0.065 0.935 47 H 0.082 0.918 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -16.977 -10.035 9.999 22.111 hybrid contribution 0.655 0.163 -1.953 2.066 sum -16.322 -9.873 8.046 20.703 Atomic orbital electron populations 1.21818 0.95745 1.01895 1.01706 1.21653 0.96127 0.94889 1.02914 1.20914 0.92274 0.96921 0.98531 0.92207 1.22064 1.01329 1.01503 0.96678 1.21423 0.97579 0.91334 1.02000 0.86902 1.21854 1.01985 1.01722 0.94577 1.21167 0.81391 0.92439 0.74550 1.90636 1.55765 1.47873 1.50721 1.46038 1.07792 1.08501 1.74585 1.19228 0.83675 0.84263 1.03471 1.21931 0.97447 1.10493 0.88900 1.23824 0.83648 1.06666 1.02599 1.47714 1.08637 1.44281 1.05442 1.24700 0.80893 1.01399 0.92797 1.22618 0.92914 0.95128 0.85462 1.45896 1.40291 1.24072 1.25192 1.19301 1.11385 1.06378 0.99606 0.89107 1.25605 1.01512 0.96993 1.00905 1.69905 1.42676 1.13113 1.33906 0.85142 0.78777 0.76903 0.78441 1.20259 1.22154 1.20124 1.23015 0.98332 0.92438 0.86245 1.78283 1.13398 1.20782 0.96207 1.75007 0.96869 1.16939 1.25919 0.92844 0.91963 0.93133 0.90541 0.91300 0.92423 0.92848 0.92479 0.92869 0.89252 0.91636 0.75488 0.88860 0.90481 0.77667 0.84447 0.93525 0.91835 0.93788 0.90583 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.67 71.98 0.70 -1.06 16 2 C -0.12 -1.34 5.19 30.60 0.16 -1.18 16 3 C -0.07 -1.06 1.61 -10.79 -0.02 -1.08 16 4 H 0.06 1.14 8.10 -2.38 -0.02 1.12 16 5 C -0.16 -2.90 8.63 71.98 0.62 -2.28 16 6 C -0.10 -1.51 2.32 -11.54 -0.03 -1.54 16 7 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 8 C -0.14 -1.69 8.75 71.98 0.63 -1.06 16 9 C 0.52 10.92 6.86 87.66 0.60 11.52 16 10 O -0.57 -16.09 13.66 -3.05 -0.04 -16.13 16 11 N -0.72 -14.05 5.44 -466.78 -2.54 -16.59 16 12 C 0.22 4.90 6.23 85.63 0.53 5.43 16 13 C -0.05 -1.27 6.61 41.60 0.28 -0.99 16 14 C -0.01 -0.38 10.72 83.49 0.89 0.52 16 15 N -0.27 -8.20 3.54 -332.02 -1.18 -9.37 16 16 C 0.10 3.42 5.14 46.75 0.24 3.66 16 17 C 0.17 6.64 6.90 86.44 0.60 7.23 16 18 N -0.63 -28.13 3.70 -716.68 -2.65 -30.79 16 19 C -0.24 -12.06 10.70 84.03 0.90 -11.16 16 20 H 0.09 4.36 7.83 -2.91 -0.02 4.34 16 21 C -0.06 -2.91 5.50 84.86 0.47 -2.45 16 22 N -0.95 -52.08 11.39 21.65 0.25 -51.83 16 23 Si 0.98 42.15 29.55 68.60 2.03 44.18 16 24 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.30 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 27 C 0.13 4.35 8.74 86.49 0.76 5.10 16 28 N -0.11 -3.56 13.17 37.02 0.49 -3.07 16 29 N -0.28 -8.82 12.41 -48.60 -0.60 -9.42 16 30 H 0.05 0.65 6.56 -2.39 -0.02 0.63 16 31 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.71 6.17 -2.39 -0.01 0.69 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 1.38 5.51 -2.39 -0.01 1.36 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.06 0.96 6.56 -2.39 -0.02 0.95 16 38 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.09 0.73 6.32 -2.39 -0.02 0.72 16 40 H 0.06 0.72 7.57 -2.39 -0.02 0.70 16 41 H 0.41 6.87 7.88 -92.71 -0.73 6.14 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 44 H 0.21 4.80 6.74 -2.91 -0.02 4.78 16 45 H 0.14 4.38 8.14 -2.39 -0.02 4.36 16 46 H 0.05 1.81 6.31 -2.39 -0.02 1.80 16 47 H 0.06 2.92 7.16 -2.39 -0.02 2.91 16 48 H 0.25 13.66 8.31 -92.71 -0.77 12.89 16 49 H 0.08 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -63.42 398.34 3.29 -60.12 By element: Atomic # 1 Polarization: 22.02 SS G_CDS: 0.22 Total: 22.23 kcal Atomic # 6 Polarization: 3.35 SS G_CDS: 7.33 Total: 10.68 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -6.24 Total: -121.08 kcal Atomic # 8 Polarization: -16.09 SS G_CDS: -0.04 Total: -16.13 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -63.42 3.29 -60.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107225344.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.325 kcal (2) G-P(sol) polarization free energy of solvation -63.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds