Wall clock time and date at job start Tue Mar 31 2020 18:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46795 * 2 1 4 4 H 1.08996 * 109.47553 * 305.00138 * 3 2 1 5 5 C 1.53003 * 109.46834 * 65.00202 * 3 2 1 6 6 C 1.53003 * 109.46825 * 184.99738 * 3 2 1 7 7 H 1.08996 * 109.47382 * 300.00504 * 6 3 2 8 8 C 1.53003 * 109.47036 * 60.00588 * 6 3 2 9 9 C 1.50700 * 109.46909 * 180.02562 * 6 3 2 10 10 O 1.21286 * 120.00166 * 0.02562 * 9 6 3 11 11 N 1.34781 * 119.99809 * 180.02562 * 9 6 3 12 12 C 1.46497 * 119.99938 * 180.02562 * 11 9 6 13 13 C 1.50692 * 109.47387 * 180.02562 * 12 11 9 14 14 C 1.35352 * 126.75265 * 94.99578 * 13 12 11 15 15 N 1.35310 * 106.17731 * 180.25145 * 14 13 12 16 16 C 1.46499 * 125.87266 * 179.77719 * 15 14 13 17 17 C 1.53948 * 113.74079 * 13.73661 * 16 15 14 18 18 N 1.47804 * 86.03877 * 222.08864 * 17 16 15 19 19 C 1.36943 * 134.45640 * 204.64785 * 18 17 16 20 20 H 1.07997 * 119.99668 * 173.34505 * 19 18 17 21 21 C 1.38809 * 119.99942 * 353.34097 * 19 18 17 22 22 N 1.31619 * 119.99975 * 5.06962 * 21 19 18 23 23 Si 1.86800 * 120.00115 * 185.06424 * 21 19 18 24 24 H 1.48501 * 109.47208 * 94.98853 * 23 21 19 25 25 H 1.48501 * 109.47330 * 214.99231 * 23 21 19 26 26 H 1.48504 * 109.47013 * 334.98943 * 23 21 19 27 27 C 1.47582 * 91.05254 * 24.54944 * 18 17 16 28 28 N 1.28718 * 108.26200 * 359.62540 * 15 14 13 29 29 N 1.28636 * 110.17957 * 0.38993 * 28 15 14 30 30 H 1.08998 * 109.46702 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47243 * 299.99836 * 1 2 3 32 32 H 1.08999 * 109.47317 * 59.99929 * 1 2 3 33 33 H 1.09006 * 109.46935 * 240.00470 * 2 1 3 34 34 H 1.08999 * 109.47317 * 120.00071 * 2 1 3 35 35 H 1.08993 * 109.46937 * 299.99634 * 5 3 2 36 36 H 1.08996 * 109.47103 * 59.99661 * 5 3 2 37 37 H 1.09001 * 109.46731 * 179.97438 * 5 3 2 38 38 H 1.09001 * 109.46731 * 299.99781 * 8 6 3 39 39 H 1.08996 * 109.47103 * 59.99746 * 8 6 3 40 40 H 1.08993 * 109.46937 * 179.97438 * 8 6 3 41 41 H 0.96995 * 120.00260 * 0.02562 * 11 9 6 42 42 H 1.08997 * 109.47494 * 59.99753 * 12 11 9 43 43 H 1.09005 * 109.47087 * 300.00112 * 12 11 9 44 44 H 1.07996 * 126.91261 * 359.97438 * 14 13 12 45 45 H 1.08995 * 112.95241 * 145.33142 * 16 15 14 46 46 H 1.09001 * 113.76829 * 336.35637 * 17 16 15 47 47 H 1.09002 * 113.76666 * 107.74283 * 17 16 15 48 48 H 0.97004 * 119.99813 * 180.02562 * 22 21 19 49 49 H 1.09002 * 113.76642 * 221.15553 * 27 18 17 50 50 H 1.08996 * 113.87045 * 89.76849 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 3.9696 0.7604 -1.4331 9 6 4.0672 2.8652 -0.1250 10 8 3.2828 3.7857 -0.0327 11 7 5.3880 3.1130 -0.2271 12 6 5.8764 4.4942 -0.2259 13 6 7.3782 4.4961 -0.3511 14 6 8.0956 4.6242 -1.4916 15 7 9.3973 4.5645 -1.1269 16 6 10.5470 4.6541 -2.0304 17 6 10.1896 5.1596 -3.4399 18 7 11.1050 4.1109 -3.9366 19 6 11.8410 3.9427 -5.0792 20 1 12.5310 3.1159 -5.1601 21 6 11.7000 4.8349 -6.1332 22 7 10.9352 5.8975 -5.9981 23 14 12.5957 4.5275 -7.7433 24 1 11.6916 3.8205 -8.6856 25 1 13.0105 5.8250 -8.3346 26 1 13.7973 3.6925 -7.4897 27 6 10.9095 3.3194 -2.7064 28 7 9.4519 4.4185 0.1508 29 7 8.2644 4.3710 0.6431 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 1.3969 36 1 2.0698 1.5875 2.1492 37 1 1.9988 3.1541 1.3076 38 1 3.6063 -0.2672 -1.4331 39 1 3.5350 1.2995 -2.2748 40 1 5.0559 0.7622 -1.5228 41 1 6.0153 2.3769 -0.3014 42 1 5.5885 4.9806 0.7060 43 1 5.4414 5.0341 -1.0670 44 1 7.7073 4.7448 -2.4921 45 1 11.3996 5.1657 -1.5839 46 1 9.1469 4.9981 -3.7133 47 1 10.5313 6.1747 -3.6423 48 1 10.8363 6.5208 -6.7348 49 1 11.8252 2.8679 -2.3244 50 1 10.0793 2.6154 -2.7622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001107225345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:49:00 Heat of formation + Delta-G solvation = 99.851043 kcal Electronic energy + Delta-G solvation = -28626.865081 eV Core-core repulsion = 24692.867058 eV Total energy + Delta-G solvation = -3933.998022 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.09846 -40.26809 -38.40519 -37.04425 -35.20955 -33.48011 -32.58378 -31.94473 -31.06242 -29.41513 -28.00218 -26.92000 -25.32294 -24.71083 -24.44290 -23.92224 -21.96372 -21.16712 -20.72912 -19.82937 -19.64898 -17.66311 -17.18204 -16.69093 -16.43191 -15.75336 -15.43910 -15.34632 -15.13294 -14.79182 -14.47701 -14.23955 -14.13908 -13.84818 -13.40597 -13.26621 -13.07805 -12.94049 -12.59613 -12.25192 -12.17068 -12.12545 -12.04353 -11.87626 -11.79614 -11.49397 -11.38476 -11.20677 -11.00939 -10.98056 -10.97486 -10.78893 -10.66370 -10.54972 -10.25037 -9.95701 -9.76775 -9.57120 -9.15325 -9.10578 -9.04791 -7.28348 -6.09557 -3.44198 1.78963 2.41479 2.55413 2.61326 3.23693 3.29561 3.31457 3.33897 4.19291 4.33364 4.38168 4.48262 4.59571 4.68360 4.70343 4.82678 4.91208 4.96984 5.02648 5.12402 5.17408 5.22181 5.33104 5.36305 5.36622 5.46299 5.50208 5.55406 5.57938 5.62130 5.72996 5.73982 5.76971 5.81719 5.95806 5.99773 6.02104 6.08531 6.13404 6.18891 6.23608 6.27116 6.44776 6.51007 6.73939 6.99452 7.13599 7.39785 7.63918 8.13373 8.70643 8.72025 9.37993 10.16134 11.08157 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.002147 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.227061 B =13039.901913 C =14154.982370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.070 4.070 4 H 0.076 0.924 5 C -0.161 4.161 6 C -0.107 4.107 7 H 0.096 0.904 8 C -0.148 4.148 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.723 5.723 12 C 0.215 3.785 13 C -0.063 4.063 14 C -0.015 4.015 15 N -0.265 5.265 16 C 0.076 3.924 17 C 0.166 3.834 18 N -0.598 5.598 19 C -0.234 4.234 20 H 0.088 0.912 21 C 0.000 4.000 22 N -0.917 5.917 23 Si 0.918 3.082 24 H -0.286 1.286 25 H -0.288 1.288 26 H -0.277 1.277 27 C 0.120 3.880 28 N -0.089 5.089 29 N -0.267 5.267 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.402 0.598 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.191 0.809 45 H 0.132 0.868 46 H 0.043 0.957 47 H 0.088 0.912 48 H 0.259 0.741 49 H 0.062 0.938 50 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.266 -9.090 10.676 20.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.089 4.089 4 H 0.095 0.905 5 C -0.218 4.218 6 C -0.128 4.128 7 H 0.114 0.886 8 C -0.206 4.206 9 C 0.306 3.694 10 O -0.414 6.414 11 N -0.375 5.375 12 C 0.090 3.910 13 C -0.202 4.202 14 C -0.169 4.169 15 N -0.057 5.057 16 C -0.026 4.026 17 C 0.040 3.960 18 N -0.325 5.325 19 C -0.361 4.361 20 H 0.106 0.894 21 C -0.198 4.198 22 N -0.562 5.562 23 Si 0.747 3.253 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.203 1.203 27 C -0.007 4.007 28 N -0.068 5.068 29 N -0.134 5.134 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.236 0.764 42 H 0.102 0.898 43 H 0.103 0.897 44 H 0.208 0.792 45 H 0.149 0.851 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.069 0.931 49 H 0.080 0.920 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -14.710 -8.458 11.623 20.568 hybrid contribution 0.270 -0.359 -2.017 2.066 sum -14.440 -8.818 9.607 19.457 Atomic orbital electron populations 1.21806 0.95818 1.01349 1.02062 1.21681 0.96069 0.96265 1.02051 1.20947 0.92137 0.95971 0.99828 0.90513 1.22112 1.01038 1.02866 0.95741 1.21389 0.97777 0.93116 1.00566 0.88594 1.21863 1.01724 1.01097 0.95878 1.20626 0.81743 0.91526 0.75529 1.90638 1.55000 1.46571 1.49191 1.46103 1.07630 1.08853 1.74919 1.19268 0.84906 0.83378 1.03481 1.21737 0.96802 1.11610 0.90009 1.23504 0.84022 1.07294 1.02046 1.47911 1.07770 1.43344 1.06697 1.25314 0.86151 1.02499 0.88613 1.22688 0.94549 0.96734 0.82065 1.45654 1.50669 1.19052 1.17107 1.19002 1.16408 1.11033 0.89636 0.89450 1.24888 0.99457 0.97062 0.98363 1.69781 1.41548 1.12736 1.32138 0.86020 0.78942 0.77364 0.82960 1.21264 1.21410 1.20264 1.22929 0.99126 0.91989 0.86702 1.78273 1.17480 1.19387 0.91684 1.75021 0.94945 1.16692 1.26754 0.92980 0.92444 0.92751 0.91608 0.92051 0.92881 0.93614 0.89853 0.91070 0.91877 0.92067 0.76372 0.89840 0.89702 0.79244 0.85061 0.93917 0.89428 0.93062 0.92009 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.83 5.19 -26.73 -0.14 -0.97 16 3 C -0.07 -0.59 1.62 -90.61 -0.15 -0.74 16 4 H 0.08 0.75 8.10 -51.93 -0.42 0.33 16 5 C -0.16 -1.49 8.63 37.16 0.32 -1.17 16 6 C -0.11 -0.89 2.32 -91.77 -0.21 -1.10 16 7 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 8 C -0.15 -1.06 8.75 37.16 0.33 -0.73 16 9 C 0.52 5.75 6.86 -10.98 -0.08 5.67 16 10 O -0.54 -7.58 13.66 5.55 0.08 -7.51 16 11 N -0.72 -7.63 5.44 -61.48 -0.33 -7.96 16 12 C 0.21 2.53 6.23 -5.20 -0.03 2.50 16 13 C -0.06 -0.87 6.61 -82.78 -0.55 -1.42 16 14 C -0.01 -0.21 10.72 -17.05 -0.18 -0.40 16 15 N -0.26 -4.24 3.54 -56.30 -0.20 -4.44 16 16 C 0.08 1.29 5.14 -70.14 -0.36 0.93 16 17 C 0.17 3.36 6.81 -2.84 -0.02 3.34 16 18 N -0.60 -13.60 3.70 -177.88 -0.66 -14.26 16 19 C -0.23 -5.96 10.70 -15.06 -0.16 -6.12 16 20 H 0.09 2.15 7.83 -52.49 -0.41 1.74 16 21 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 22 N -0.92 -24.82 11.51 55.49 0.64 -24.18 16 23 Si 0.92 20.50 29.56 -169.99 -5.02 15.47 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 C 0.12 2.17 8.74 -2.96 -0.03 2.15 16 28 N -0.09 -1.53 13.16 60.35 0.79 -0.74 16 29 N -0.27 -4.39 12.41 33.29 0.41 -3.97 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.38 6.56 -51.93 -0.34 0.04 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.41 6.17 -51.93 -0.32 0.09 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 36 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.98 5.51 -51.93 -0.29 0.69 16 38 H 0.07 0.42 6.32 -51.93 -0.33 0.09 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.42 7.56 -51.93 -0.39 0.02 16 41 H 0.40 3.79 7.88 -40.82 -0.32 3.47 16 42 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.19 2.40 6.73 -52.49 -0.35 2.05 16 45 H 0.13 2.15 8.14 -51.93 -0.42 1.72 16 46 H 0.04 0.85 6.31 -51.93 -0.33 0.52 16 47 H 0.09 1.96 7.37 -51.93 -0.38 1.58 16 48 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 49 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 50 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 398.56 15.07 6.01 6.01 Total: -1.00 -29.67 398.56 -7.29 -36.96 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -8.01 Total: 3.40 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -0.99 Total: 1.22 kcal Atomic # 7 Polarization: -56.21 SS G_CDS: 0.65 Total: -55.55 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: 0.08 Total: -7.51 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -29.67 -7.29 -36.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107225345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.815 kcal (2) G-P(sol) polarization free energy of solvation -29.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds