Wall clock time and date at job start Tue Mar 31 2020 18:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.46795 * 2 1 4 4 H 1.08996 * 109.47553 * 305.00138 * 3 2 1 5 5 C 1.53003 * 109.46834 * 65.00202 * 3 2 1 6 6 C 1.53003 * 109.46825 * 184.99738 * 3 2 1 7 7 H 1.08996 * 109.47382 * 300.00504 * 6 3 2 8 8 C 1.53003 * 109.47036 * 60.00588 * 6 3 2 9 9 C 1.50700 * 109.46909 * 180.02562 * 6 3 2 10 10 O 1.21286 * 120.00166 * 0.02562 * 9 6 3 11 11 N 1.34781 * 119.99809 * 180.02562 * 9 6 3 12 12 C 1.46497 * 119.99938 * 180.02562 * 11 9 6 13 13 C 1.50692 * 109.47387 * 180.02562 * 12 11 9 14 14 C 1.35352 * 126.75265 * 94.99578 * 13 12 11 15 15 N 1.35310 * 106.17731 * 180.25145 * 14 13 12 16 16 C 1.46499 * 125.87266 * 179.77719 * 15 14 13 17 17 C 1.53948 * 113.74079 * 13.73661 * 16 15 14 18 18 N 1.47804 * 86.03877 * 222.08864 * 17 16 15 19 19 C 1.36943 * 134.45640 * 204.64785 * 18 17 16 20 20 H 1.07997 * 119.99668 * 173.34505 * 19 18 17 21 21 C 1.38809 * 119.99942 * 353.34097 * 19 18 17 22 22 N 1.31619 * 119.99975 * 5.06962 * 21 19 18 23 23 Si 1.86800 * 120.00115 * 185.06424 * 21 19 18 24 24 H 1.48501 * 109.47208 * 94.98853 * 23 21 19 25 25 H 1.48501 * 109.47330 * 214.99231 * 23 21 19 26 26 H 1.48504 * 109.47013 * 334.98943 * 23 21 19 27 27 C 1.47582 * 91.05254 * 24.54944 * 18 17 16 28 28 N 1.28718 * 108.26200 * 359.62540 * 15 14 13 29 29 N 1.28636 * 110.17957 * 0.38993 * 28 15 14 30 30 H 1.08998 * 109.46702 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47243 * 299.99836 * 1 2 3 32 32 H 1.08999 * 109.47317 * 59.99929 * 1 2 3 33 33 H 1.09006 * 109.46935 * 240.00470 * 2 1 3 34 34 H 1.08999 * 109.47317 * 120.00071 * 2 1 3 35 35 H 1.08993 * 109.46937 * 299.99634 * 5 3 2 36 36 H 1.08996 * 109.47103 * 59.99661 * 5 3 2 37 37 H 1.09001 * 109.46731 * 179.97438 * 5 3 2 38 38 H 1.09001 * 109.46731 * 299.99781 * 8 6 3 39 39 H 1.08996 * 109.47103 * 59.99746 * 8 6 3 40 40 H 1.08993 * 109.46937 * 179.97438 * 8 6 3 41 41 H 0.96995 * 120.00260 * 0.02562 * 11 9 6 42 42 H 1.08997 * 109.47494 * 59.99753 * 12 11 9 43 43 H 1.09005 * 109.47087 * 300.00112 * 12 11 9 44 44 H 1.07996 * 126.91261 * 359.97438 * 14 13 12 45 45 H 1.08995 * 112.95241 * 145.33142 * 16 15 14 46 46 H 1.09001 * 113.76829 * 336.35637 * 17 16 15 47 47 H 1.09002 * 113.76666 * 107.74283 * 17 16 15 48 48 H 0.97004 * 119.99813 * 180.02562 * 22 21 19 49 49 H 1.09002 * 113.76642 * 221.15553 * 27 18 17 50 50 H 1.08996 * 113.87045 * 89.76849 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 3.9696 0.7604 -1.4331 9 6 4.0672 2.8652 -0.1250 10 8 3.2828 3.7857 -0.0327 11 7 5.3880 3.1130 -0.2271 12 6 5.8764 4.4942 -0.2259 13 6 7.3782 4.4961 -0.3511 14 6 8.0956 4.6242 -1.4916 15 7 9.3973 4.5645 -1.1269 16 6 10.5470 4.6541 -2.0304 17 6 10.1896 5.1596 -3.4399 18 7 11.1050 4.1109 -3.9366 19 6 11.8410 3.9427 -5.0792 20 1 12.5310 3.1159 -5.1601 21 6 11.7000 4.8349 -6.1332 22 7 10.9352 5.8975 -5.9981 23 14 12.5957 4.5275 -7.7433 24 1 11.6916 3.8205 -8.6856 25 1 13.0105 5.8250 -8.3346 26 1 13.7973 3.6925 -7.4897 27 6 10.9095 3.3194 -2.7064 28 7 9.4519 4.4185 0.1508 29 7 8.2644 4.3710 0.6431 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 0.5489 2.1252 1.3969 36 1 2.0698 1.5875 2.1492 37 1 1.9988 3.1541 1.3076 38 1 3.6063 -0.2672 -1.4331 39 1 3.5350 1.2995 -2.2748 40 1 5.0559 0.7622 -1.5228 41 1 6.0153 2.3769 -0.3014 42 1 5.5885 4.9806 0.7060 43 1 5.4414 5.0341 -1.0670 44 1 7.7073 4.7448 -2.4921 45 1 11.3996 5.1657 -1.5839 46 1 9.1469 4.9981 -3.7133 47 1 10.5313 6.1747 -3.6423 48 1 10.8363 6.5208 -6.7348 49 1 11.8252 2.8679 -2.3244 50 1 10.0793 2.6154 -2.7622 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107225345.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:48:59 Heat of formation + Delta-G solvation = 81.779644 kcal Electronic energy + Delta-G solvation = -28627.648715 eV Core-core repulsion = 24692.867058 eV Total energy + Delta-G solvation = -3934.781657 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.35605 -41.12669 -39.94530 -37.76577 -36.22557 -34.97501 -33.74370 -33.20317 -32.09018 -30.07229 -29.70683 -27.97207 -26.84090 -26.02066 -25.34230 -24.65873 -23.42020 -22.35679 -21.51945 -21.14157 -20.55092 -19.03246 -18.54254 -17.86409 -17.54090 -16.96649 -16.83907 -16.33599 -16.07665 -15.97289 -15.72094 -15.14768 -15.11950 -14.79940 -14.64788 -14.42236 -13.99846 -13.90209 -13.70296 -13.56899 -13.40398 -13.27736 -12.97141 -12.81466 -12.73714 -12.66679 -12.62668 -12.44686 -12.41897 -12.09843 -12.07897 -11.79403 -11.74914 -11.63925 -11.42981 -11.26656 -11.02636 -10.91031 -10.67322 -10.21465 -10.05668 -9.09956 -8.02778 -5.37138 0.56362 1.24225 1.29284 1.47750 1.50087 1.57446 1.68768 2.41112 2.43607 3.05978 3.11843 3.32138 3.33116 3.69846 3.72910 3.79800 3.91416 3.96986 4.00215 4.15716 4.22982 4.39626 4.42811 4.48977 4.56480 4.58940 4.64791 4.69053 4.72467 4.80239 4.84849 4.91979 4.96871 5.01065 5.01679 5.03983 5.08279 5.15849 5.18522 5.23862 5.32827 5.37052 5.38886 5.42594 5.58072 5.65849 5.68528 5.76377 6.54861 6.79812 7.27216 7.45494 7.48196 8.33823 9.14635 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.002147 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.227061 B =13039.901913 C =14154.982370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.068 4.068 4 H 0.059 0.941 5 C -0.158 4.158 6 C -0.101 4.101 7 H 0.113 0.887 8 C -0.145 4.145 9 C 0.516 3.484 10 O -0.570 6.570 11 N -0.717 5.717 12 C 0.219 3.781 13 C -0.048 4.048 14 C -0.014 4.014 15 N -0.268 5.268 16 C 0.104 3.896 17 C 0.168 3.832 18 N -0.627 5.627 19 C -0.239 4.239 20 H 0.092 0.908 21 C -0.055 4.055 22 N -0.947 5.947 23 Si 0.978 3.022 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.266 1.266 27 C 0.126 3.874 28 N -0.108 5.108 29 N -0.281 5.281 30 H 0.061 0.939 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.056 0.944 36 H 0.053 0.947 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.409 0.591 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.206 0.794 45 H 0.139 0.861 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.253 0.747 49 H 0.076 0.924 50 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.481 -11.082 11.015 21.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.156 4.156 3 C -0.087 4.087 4 H 0.077 0.923 5 C -0.215 4.215 6 C -0.122 4.122 7 H 0.131 0.869 8 C -0.203 4.203 9 C 0.305 3.695 10 O -0.450 6.450 11 N -0.369 5.369 12 C 0.094 3.906 13 C -0.188 4.188 14 C -0.167 4.167 15 N -0.061 5.061 16 C 0.002 3.998 17 C 0.042 3.958 18 N -0.354 5.354 19 C -0.366 4.366 20 H 0.109 0.891 21 C -0.249 4.249 22 N -0.594 5.594 23 Si 0.806 3.194 24 H -0.214 1.214 25 H -0.222 1.222 26 H -0.190 1.190 27 C -0.001 4.001 28 N -0.087 5.087 29 N -0.148 5.148 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.107 0.893 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.245 0.755 42 H 0.096 0.904 43 H 0.111 0.889 44 H 0.223 0.777 45 H 0.156 0.844 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.912 -10.491 12.001 21.828 hybrid contribution 0.259 0.254 -2.021 2.053 sum -14.653 -10.237 9.980 20.472 Atomic orbital electron populations 1.21817 0.95750 1.01896 1.01705 1.21654 0.96121 0.94887 1.02913 1.20919 0.92278 0.96933 0.98570 0.92254 1.22056 1.01331 1.01453 0.96648 1.21416 0.97567 0.91316 1.01951 0.86922 1.21865 1.02052 1.01731 0.94611 1.21167 0.81396 0.92436 0.74544 1.90636 1.55782 1.47870 1.50695 1.46034 1.07772 1.08515 1.74595 1.19224 0.83570 0.84285 1.03566 1.21928 0.97339 1.10255 0.89240 1.23815 0.83380 1.06621 1.02897 1.47715 1.07965 1.43907 1.06476 1.24727 0.86317 1.01364 0.87440 1.22559 0.94237 0.95020 0.84017 1.45887 1.50952 1.20972 1.17638 1.19335 1.16262 1.10510 0.90523 0.89075 1.25624 1.00856 0.97228 1.01237 1.69929 1.43401 1.13590 1.32487 0.85076 0.78193 0.76768 0.79386 1.21401 1.22206 1.19048 1.23016 1.00095 0.92332 0.84608 1.78279 1.17951 1.20543 0.91877 1.75009 0.95209 1.17079 1.27473 0.91962 0.92755 0.93226 0.90647 0.91194 0.92452 0.92778 0.92495 0.89323 0.92852 0.91538 0.75493 0.90430 0.88916 0.77714 0.84360 0.93489 0.92177 0.93769 0.90564 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 71.98 0.70 -1.07 16 2 C -0.12 -1.35 5.19 30.60 0.16 -1.19 16 3 C -0.07 -1.08 1.62 -10.79 -0.02 -1.09 16 4 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 5 C -0.16 -2.84 8.63 71.98 0.62 -2.22 16 6 C -0.10 -1.51 2.32 -11.54 -0.03 -1.53 16 7 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 8 C -0.15 -1.75 8.75 71.98 0.63 -1.12 16 9 C 0.52 10.96 6.86 87.66 0.60 11.57 16 10 O -0.57 -16.13 13.66 -3.05 -0.04 -16.17 16 11 N -0.72 -14.12 5.44 -466.79 -2.54 -16.66 16 12 C 0.22 4.91 6.23 85.63 0.53 5.44 16 13 C -0.05 -1.27 6.61 41.59 0.28 -0.99 16 14 C -0.01 -0.37 10.72 83.49 0.89 0.52 16 15 N -0.27 -8.18 3.54 -332.04 -1.18 -9.35 16 16 C 0.10 3.38 5.14 46.75 0.24 3.62 16 17 C 0.17 6.74 6.81 86.44 0.59 7.33 16 18 N -0.63 -28.06 3.70 -716.69 -2.65 -30.71 16 19 C -0.24 -12.01 10.70 84.03 0.90 -11.11 16 20 H 0.09 4.38 7.83 -2.91 -0.02 4.36 16 21 C -0.06 -2.86 5.50 84.86 0.47 -2.39 16 22 N -0.95 -51.92 11.51 21.65 0.25 -51.68 16 23 Si 0.98 42.09 29.56 68.60 2.03 44.12 16 24 H -0.29 -12.30 7.11 99.48 0.71 -11.59 16 25 H -0.30 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 27 C 0.13 4.33 8.74 86.49 0.76 5.08 16 28 N -0.11 -3.55 13.16 37.02 0.49 -3.06 16 29 N -0.28 -8.84 12.41 -48.60 -0.60 -9.44 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.65 6.56 -2.39 -0.02 0.63 16 32 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.73 6.17 -2.38 -0.01 0.71 16 34 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.06 0.95 6.56 -2.39 -0.02 0.93 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.06 1.35 5.51 -2.39 -0.01 1.34 16 38 H 0.09 0.78 6.32 -2.39 -0.02 0.76 16 39 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 0.74 7.56 -2.39 -0.02 0.72 16 41 H 0.41 6.91 7.88 -92.71 -0.73 6.18 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 44 H 0.21 4.82 6.73 -2.91 -0.02 4.80 16 45 H 0.14 4.35 8.14 -2.39 -0.02 4.33 16 46 H 0.05 1.84 6.31 -2.39 -0.02 1.82 16 47 H 0.06 2.75 7.37 -2.39 -0.02 2.73 16 48 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 49 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 50 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -63.37 398.56 3.29 -60.09 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.22 Total: 22.04 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 7.32 Total: 10.82 kcal Atomic # 7 Polarization: -114.67 SS G_CDS: -6.23 Total: -120.90 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.04 Total: -16.17 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -63.37 3.29 -60.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107225345.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.865 kcal (2) G-P(sol) polarization free energy of solvation -63.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds