Wall clock time and date at job start Tue Mar 31 2020 19:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47032 * 2 1 4 4 N 1.46501 * 109.46947 * 180.02562 * 3 2 1 5 5 C 1.34807 * 126.59760 * 125.00387 * 4 3 2 6 6 C 1.36596 * 106.84292 * 179.97438 * 5 4 3 7 7 C 1.47527 * 125.76815 * 180.02562 * 6 5 4 8 8 O 1.21591 * 120.00455 * 359.97438 * 7 6 5 9 9 N 1.34774 * 119.99415 * 179.97438 * 7 6 5 10 10 C 1.46505 * 119.99981 * 179.97438 * 9 7 6 11 11 C 1.52993 * 109.47565 * 175.98387 * 10 9 7 12 12 N 1.46506 * 109.46848 * 305.25126 * 11 10 9 13 13 C 1.36933 * 120.00106 * 300.07204 * 12 11 10 14 14 H 1.08000 * 119.99835 * 354.07925 * 13 12 11 15 15 C 1.38811 * 120.00122 * 174.07265 * 13 12 11 16 16 N 1.31621 * 119.99832 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99842 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47356 * 90.00294 * 17 15 13 19 19 H 1.48507 * 109.47127 * 209.99980 * 17 15 13 20 20 H 1.48500 * 109.47489 * 329.99895 * 17 15 13 21 21 C 1.53000 * 109.47526 * 185.25086 * 11 10 9 22 22 C 1.52994 * 109.47006 * 180.02562 * 21 11 10 23 23 C 1.52998 * 109.47375 * 59.99977 * 22 21 11 24 24 C 1.52996 * 109.47204 * 299.99645 * 23 22 21 25 25 C 1.53003 * 109.47210 * 60.00060 * 24 23 22 26 26 N 1.34395 * 108.45667 * 359.97438 * 6 5 4 27 27 N 1.28759 * 109.52638 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.47401 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47610 * 299.99890 * 1 2 3 30 30 H 1.09009 * 109.47289 * 59.99770 * 1 2 3 31 31 H 1.09004 * 109.47130 * 240.00332 * 2 1 3 32 32 H 1.08997 * 109.47127 * 119.99820 * 2 1 3 33 33 H 1.09000 * 109.46429 * 60.00266 * 3 2 1 34 34 H 1.08997 * 109.47017 * 299.99887 * 3 2 1 35 35 H 1.07999 * 126.57720 * 0.02562 * 5 4 3 36 36 H 0.97003 * 120.00440 * 0.02562 * 9 7 6 37 37 H 1.09004 * 109.46788 * 295.98701 * 10 9 7 38 38 H 1.09000 * 109.46693 * 55.97899 * 10 9 7 39 39 H 0.97005 * 119.99974 * 120.08163 * 12 11 10 40 40 H 0.97004 * 119.99420 * 179.97438 * 16 15 13 41 41 H 1.09000 * 109.46505 * 300.00014 * 21 11 10 42 42 H 1.08994 * 109.47010 * 59.99659 * 21 11 10 43 43 H 1.09000 * 109.47425 * 299.99358 * 22 21 11 44 44 H 1.09002 * 109.46659 * 179.97438 * 22 21 11 45 45 H 1.09005 * 109.47045 * 179.97438 * 23 22 21 46 46 H 1.09001 * 109.46947 * 60.00199 * 23 22 21 47 47 H 1.09000 * 109.46714 * 300.00079 * 24 23 22 48 48 H 1.09003 * 109.47236 * 180.02562 * 24 23 22 49 49 H 1.08994 * 109.47342 * 179.97438 * 25 24 23 50 50 H 1.09001 * 109.46762 * 59.99556 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3083 2.0635 -0.8874 6 6 5.5940 1.7991 -0.5095 7 6 6.8099 2.2788 -1.1935 8 8 6.7147 2.9741 -2.1865 9 7 8.0263 1.9464 -0.7177 10 6 9.2338 2.4223 -1.3973 11 6 10.4690 1.9912 -0.6041 12 7 10.3487 2.4587 0.7791 13 6 10.2362 3.7979 1.0419 14 1 10.3318 4.5153 0.2403 15 6 9.9990 4.2333 2.3384 16 7 9.8828 3.3590 3.3153 17 14 9.8447 6.0601 2.6966 18 1 8.4244 6.4725 2.5633 19 1 10.3122 6.3347 4.0792 20 1 10.6750 6.8255 1.7322 21 6 11.7212 2.5977 -1.2404 22 6 12.9563 2.1660 -0.4476 23 6 13.0646 0.6399 -0.4630 24 6 11.8125 0.0333 0.1734 25 6 10.5772 0.4650 -0.6195 26 7 5.5641 1.0289 0.5915 27 7 4.3412 0.7974 0.9216 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.9954 2.6570 -1.7337 36 1 8.1023 1.3915 0.0742 37 1 9.2785 1.9961 -2.3995 38 1 9.2073 3.5098 -1.4659 39 1 10.3490 1.8197 1.5089 40 1 9.7174 3.6633 4.2214 41 1 11.8105 2.2498 -2.2696 42 1 11.6438 3.6849 -1.2299 43 1 12.8672 2.5136 0.5817 44 1 13.8484 2.5978 -0.9012 45 1 13.9449 0.3324 0.1016 46 1 13.1538 0.2924 -1.4923 47 1 11.7234 0.3809 1.2027 48 1 11.8898 -1.0539 0.1628 49 1 9.6852 0.0325 -0.1664 50 1 10.6664 0.1175 -1.6487 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115795237.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:41 Heat of formation + Delta-G solvation = 49.635013 kcal Electronic energy + Delta-G solvation = -29835.202363 eV Core-core repulsion = 25899.026810 eV Total energy + Delta-G solvation = -3936.175553 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.06389 -39.30663 -38.16540 -36.16518 -34.37604 -33.21032 -32.71589 -31.23383 -30.55797 -30.17823 -28.49168 -27.30427 -25.45684 -23.69138 -23.24631 -22.70255 -21.99369 -21.59632 -20.42523 -19.78147 -18.36896 -17.84731 -17.02848 -16.31674 -16.07011 -15.51709 -15.34522 -15.03887 -14.55047 -14.45978 -14.31369 -13.94846 -13.78155 -13.57153 -13.52207 -13.15204 -12.88531 -12.71419 -12.47003 -12.15608 -12.01027 -11.84483 -11.80657 -11.65222 -11.51464 -11.36332 -11.05199 -10.99261 -10.82451 -10.70179 -10.49991 -10.30185 -10.11307 -10.02315 -9.79128 -9.59220 -9.54148 -9.22471 -9.15319 -8.81545 -8.30872 -6.90747 -5.70688 -2.99104 1.23385 1.99685 2.03373 3.47379 3.53458 3.53995 3.64814 3.79340 4.10450 4.32559 4.39321 4.63660 4.64851 4.82766 4.88921 4.97848 5.14384 5.17649 5.27101 5.32051 5.34648 5.37032 5.52855 5.61045 5.63028 5.71162 5.76228 5.79480 5.88061 5.97405 6.02782 6.10662 6.17367 6.21720 6.25623 6.36948 6.38681 6.51091 6.56330 6.64295 6.84129 6.86398 6.88878 7.03411 7.15381 7.21983 7.79357 7.98605 8.25948 8.47058 8.73969 9.59695 10.13386 10.49733 11.51262 Molecular weight = 335.21amu Principal moments of inertia in cm(-1) A = 0.011442 B = 0.003298 C = 0.002877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2446.483781 B = 8488.381729 C = 9730.173875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.138 4.138 3 C 0.122 3.878 4 N -0.366 5.366 5 C 0.084 3.916 6 C -0.090 4.090 7 C 0.598 3.402 8 O -0.559 6.559 9 N -0.679 5.679 10 C 0.116 3.884 11 C 0.191 3.809 12 N -0.708 5.708 13 C -0.229 4.229 14 H 0.068 0.932 15 C -0.008 4.008 16 N -0.928 5.928 17 Si 0.898 3.102 18 H -0.293 1.293 19 H -0.294 1.294 20 H -0.283 1.283 21 C -0.116 4.116 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.115 4.115 26 N -0.194 5.194 27 N -0.068 5.068 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.202 0.798 36 H 0.411 0.589 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.385 0.615 40 H 0.253 0.747 41 H 0.045 0.955 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.043 0.957 45 H 0.051 0.949 46 H 0.049 0.951 47 H 0.073 0.927 48 H 0.049 0.951 49 H 0.059 0.941 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.197 -8.006 -9.677 17.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.176 4.176 3 C 0.001 3.999 4 N -0.152 5.152 5 C -0.072 4.072 6 C -0.230 4.230 7 C 0.381 3.619 8 O -0.438 6.438 9 N -0.327 5.327 10 C -0.010 4.010 11 C 0.099 3.901 12 N -0.350 5.350 13 C -0.360 4.360 14 H 0.086 0.914 15 C -0.204 4.204 16 N -0.576 5.576 17 Si 0.730 3.270 18 H -0.221 1.221 19 H -0.220 1.220 20 H -0.209 1.209 21 C -0.156 4.156 22 C -0.147 4.147 23 C -0.150 4.150 24 C -0.153 4.153 25 C -0.153 4.153 26 N -0.068 5.068 27 N -0.048 5.048 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.218 0.782 36 H 0.248 0.752 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.221 0.779 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.078 0.922 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.227 -8.210 -9.086 17.305 hybrid contribution -0.392 1.418 0.083 1.473 sum -12.618 -6.793 -9.003 16.924 Atomic orbital electron populations 1.21705 0.94005 1.02748 1.02287 1.21829 0.96782 0.94752 1.04248 1.22091 0.72965 0.99878 1.04966 1.50536 1.08593 1.35755 1.20276 1.23314 0.90305 0.97454 0.96158 1.21633 0.94775 1.07818 0.98758 1.16719 0.82021 0.79961 0.83213 1.90745 1.86891 1.39570 1.26561 1.45545 1.04454 1.51666 1.31066 1.21914 0.84744 1.00061 0.94290 1.19823 0.91320 0.91645 0.87348 1.42437 1.87259 1.05295 1.00034 1.19045 1.40542 0.83590 0.92820 0.91389 1.24655 1.02706 0.96891 0.96128 1.69649 1.56143 1.31982 0.99835 0.86331 0.77606 0.85979 0.77117 1.22051 1.22005 1.20860 1.21819 0.95565 1.01080 0.97153 1.21370 0.96331 0.94465 1.02508 1.21475 0.97312 0.96648 0.99562 1.21467 0.94433 0.98574 1.00803 1.21708 0.98053 0.95781 0.99792 1.74713 1.12479 1.09997 1.09612 1.81971 0.93503 1.17553 1.11773 0.91723 0.92091 0.92306 0.91080 0.89964 0.88486 0.87920 0.78171 0.75216 0.93029 0.91262 0.77929 0.93699 0.93662 0.91814 0.90025 0.93780 0.93069 0.93202 0.90820 0.93230 0.92221 0.92263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 9.91 37.16 0.37 -0.30 16 2 C -0.14 -0.90 6.14 -26.73 -0.16 -1.07 16 3 C 0.12 0.86 6.54 -4.04 -0.03 0.84 16 4 N -0.37 -4.41 3.69 -61.06 -0.23 -4.64 16 5 C 0.08 1.10 11.27 -16.84 -0.19 0.91 16 6 C -0.09 -1.55 6.99 -83.55 -0.58 -2.14 16 7 C 0.60 11.53 7.82 -12.47 -0.10 11.43 16 8 O -0.56 -11.61 16.86 5.29 0.09 -11.53 16 9 N -0.68 -13.11 5.13 -61.35 -0.31 -13.42 16 10 C 0.12 2.19 4.32 -4.04 -0.02 2.17 16 11 C 0.19 3.50 0.40 -131.82 -0.05 3.45 16 12 N -0.71 -15.97 3.56 -47.23 -0.17 -16.14 16 13 C -0.23 -5.94 8.72 -15.06 -0.13 -6.07 16 14 H 0.07 1.78 6.75 -52.49 -0.35 1.42 16 15 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 16 N -0.93 -27.21 13.07 55.49 0.73 -26.48 16 17 Si 0.90 22.61 29.55 -169.99 -5.02 17.59 16 18 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 21 C -0.12 -2.01 4.56 -26.73 -0.12 -2.13 16 22 C -0.11 -1.83 5.76 -26.74 -0.15 -1.99 16 23 C -0.11 -1.65 5.92 -26.73 -0.16 -1.81 16 24 C -0.12 -1.78 5.75 -26.73 -0.15 -1.94 16 25 C -0.12 -1.84 4.65 -26.73 -0.12 -1.96 16 26 N -0.19 -3.54 12.04 32.85 0.40 -3.14 16 27 N -0.07 -1.08 13.65 60.35 0.82 -0.26 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.21 8.14 -51.92 -0.42 -0.21 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.10 0.44 8.08 -51.93 -0.42 0.02 16 35 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 36 H 0.41 8.17 6.96 -40.82 -0.28 7.88 16 37 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.07 1.47 7.58 -51.93 -0.39 1.08 16 39 H 0.39 9.43 6.53 -40.82 -0.27 9.17 16 40 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 41 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.21 7.16 -51.93 -0.37 0.84 16 43 H 0.08 1.64 7.61 -51.93 -0.39 1.24 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.32 6.86 -51.93 -0.36 0.96 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.97 7.11 -51.93 -0.37 0.60 16 50 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 400.00 15.07 6.03 6.03 Total: -1.00 -32.13 400.00 -7.64 -39.77 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: -8.26 Total: 13.14 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -1.70 Total: -0.92 kcal Atomic # 7 Polarization: -65.32 SS G_CDS: 1.24 Total: -64.08 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.13 -7.64 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115795237.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.407 kcal (2) G-P(sol) polarization free energy of solvation -32.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds